BDGP Sequence Production Resources |
Search the DGRC for RE38157
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 381 |
Well: | 57 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Rtnl1-RC |
Protein status: | RE38157.pep: gold |
Sequenced Size: | 1268 |
Gene | Date | Evidence |
---|---|---|
Rtnl1-RC | 2009-06-22 | Replacement based on scoring |
1268 bp assembled on 2009-08-07
GenBank Submission: BT099515.1
> RE38157.complete GGAACTTGGCAGCGAACGTCAAACGTAGGAGCACCGCGAACGATCCGTTG GAAAACCCGAAAACTTGAATACCCGAAAAATGTCGAACAGATTGTTGGAA TCCCTTATCTACTGGCGCGATGTGAAGAAATCCGGCATTGTCTTCGGCGC TGGCCTGATCACACTGGCGGCCATCTCCAGCTTCTCGGTGATCAGCGTGT TCGCCTACTTGTCGCTCCTAACCCTCTTCGGCACCGTCGCCTTCAGAATC TACAAATCTGTGACACAGGCCGTGCAAAAGACAAACGAGGGTCACCCCTT TAAGGATTACCTGGAGCTGGATCTGACGCTGTCGCACGAAAAGGTACAGA ACATTGCCGGCGTGGCTGTGGCACATATCAATGGCTTCATCTCCGAGCTG AGGCGTCTGTTTCTTGTTGAGGATATCATCGATTCGATCAAGTTCGGCGT CATTCTGTGGGTCTTCACCTACGTGGGTGCCTGGTTCAATGGCATGACTC TGGTCATCTTGGCCTTTGTCTCGCTGTTTACCTTGCCCAAGGTCTACGAG AACAACAAGCAATCGATCGACACTCACTTGGATCTGGTGCGCAGCAAATT GACAGAAATCACCGACAAGATCCGAGTGGCCATCCCCATTGGCAACAAGA AGCCCGAGGCCGCTGCCGAGTCTGAGAAGGACAAGTAAAGAACCCGCACT AGCAAGAGAAACAACCACAAATAAACATGTTTATTTATTTATTAAGCATT ATTTGAATGGTTTTAATATTCATCCAGGCATTAAATAAATAACAAGTCTA GCAGCAATGTTTACATATTAATTGTATAATTGCAATCAACATCAATCGAT AATTGTAAATCAAATTTGAAGAGACCCAAAACAATTTATCAACCAACAAC TCGTAGCAGTTTCAAACATTGTCCAAGTGTCTTTAAGTTTTTAACGAACG AAACATTTAAAAAGCATATATAGTGAGGGAAATTAAGAAGAAAACGATTA TATAGACGCAGCAATGCAAATAAATTTCTTATGAGTTCCACGCAATTTCC GATTTGAATCAACTATCTTCATTTCGATTTATTCAGCTTTCTTAGTTTTC ATGTGACCCTTTTTAAATTAATTCTTTGCTTTAGTTTTAGTTTTACTATT TTGTTGATTTTTTGTATAAAACAACAAGAAGAACTAAGATTACTCTTAAA AACAAACAAACAAGAAAAAATCAAATAAAAAATGAAGTAAAAATCCACAA CCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 4992745..4993377 | 1251..619 | 3165 | 100 | Minus |
chr2L | 23010047 | chr2L | 4993608..4993816 | 512..304 | 1045 | 100 | Minus |
chr2L | 23010047 | chr2L | 4993886..4994094 | 304..96 | 1045 | 100 | Minus |
chr2L | 23010047 | chr2L | 4993438..4993545 | 619..512 | 540 | 100 | Minus |
chr2L | 23010047 | chr2L | 4994476..4994569 | 95..2 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4993645..4994277 | 1251..619 | 3165 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 512..304 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994786..4994994 | 304..96 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 619..512 | 540 | 100 | Minus |
2L | 23513712 | 2L | 4995376..4995469 | 95..2 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4993645..4994277 | 1251..619 | 3165 | 100 | Minus |
2L | 23513712 | 2L | 4994786..4994994 | 304..96 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 512..304 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 619..512 | 540 | 100 | Minus |
2L | 23513712 | 2L | 4995376..4995469 | 95..2 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 843..904 | 791..731 | 118 | 67.7 | Minus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 5753..5844 | 985..1078 | 114 | 62.5 | Plus |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 5053..5110 | 687..744 | 110 | 65.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4994476..4994569 | 1..95 | 98 | Minus | |
chr2L | 4992744..4993377 | 619..1252 | 99 | <- | Minus |
chr2L | 4993439..4993544 | 513..618 | 100 | <- | Minus |
chr2L | 4993608..4993816 | 304..512 | 100 | <- | Minus |
chr2L | 4993887..4994094 | 96..303 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RC | 1..609 | 80..688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RC | 1..609 | 80..688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RC | 1..609 | 80..688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RC | 1..609 | 80..688 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RC | 1..1239 | 13..1252 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RC | 60..1310 | 1..1252 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RC | 13..1263 | 1..1252 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RC | 13..1263 | 1..1252 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4993644..4994277 | 619..1252 | 99 | <- | Minus |
2L | 4994339..4994444 | 513..618 | 100 | <- | Minus |
2L | 4994508..4994716 | 304..512 | 100 | <- | Minus |
2L | 4994787..4994994 | 96..303 | 100 | <- | Minus |
2L | 4995376..4995469 | 1..95 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4993644..4994277 | 619..1252 | 99 | <- | Minus |
2L | 4994339..4994444 | 513..618 | 100 | <- | Minus |
2L | 4994508..4994716 | 304..512 | 100 | <- | Minus |
2L | 4994787..4994994 | 96..303 | 100 | <- | Minus |
2L | 4995376..4995469 | 1..95 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4993644..4994277 | 619..1252 | 99 | <- | Minus |
2L | 4994339..4994444 | 513..618 | 100 | <- | Minus |
2L | 4994508..4994716 | 304..512 | 100 | <- | Minus |
2L | 4994787..4994994 | 96..303 | 100 | <- | Minus |
2L | 4995376..4995469 | 1..95 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4994339..4994444 | 513..618 | 100 | <- | Minus |
arm_2L | 4994508..4994716 | 304..512 | 100 | <- | Minus |
arm_2L | 4994787..4994994 | 96..303 | 100 | <- | Minus |
arm_2L | 4995376..4995469 | 1..95 | 98 | Minus | |
arm_2L | 4993644..4994277 | 619..1252 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4993644..4994277 | 619..1252 | 99 | <- | Minus |
2L | 4994339..4994444 | 513..618 | 100 | <- | Minus |
2L | 4994508..4994716 | 304..512 | 100 | <- | Minus |
2L | 4994787..4994994 | 96..303 | 100 | <- | Minus |
2L | 4995376..4995469 | 1..95 | 98 | Minus |
Translation from 79 to 687
> RE38157.hyp MSNRLLESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLF GTVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHI NGFISELRRLFLVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLF TLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEK DK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rtnl1-PC | 202 | CG33113-PC | 1..202 | 1..202 | 1008 | 100 | Plus |
Rtnl1-PG | 224 | CG33113-PG | 23..224 | 1..202 | 985 | 97.5 | Plus |
Rtnl1-PD | 224 | CG33113-PD | 23..224 | 1..202 | 985 | 97.5 | Plus |
Rtnl1-PL | 222 | CG33113-PL | 26..222 | 6..202 | 982 | 99.5 | Plus |
Rtnl1-PA | 222 | CG33113-PA | 26..222 | 6..202 | 981 | 99.5 | Plus |
Translation from 79 to 687
> RE38157.pep MSNRLLESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAYLSLLTLF GTVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHI NGFISELRRLFLVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLF TLPKVYENNKQSIDTHLDLVRSKLTEITDKIRVAIPIGNKKPEAAAESEK DK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14162-PA | 596 | GF14162-PA | 401..596 | 6..202 | 940 | 91.4 | Plus |
Dana\GF17296-PA | 259 | GF17296-PA | 17..185 | 4..171 | 253 | 32.7 | Plus |
Dana\GF10829-PA | 294 | GF10829-PA | 28..193 | 4..168 | 231 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24328-PA | 607 | GG24328-PA | 411..607 | 6..202 | 984 | 95.4 | Plus |
Dere\GG25105-PA | 246 | GG25105-PA | 3..165 | 6..167 | 223 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11424-PA | 234 | GH11424-PA | 38..234 | 6..202 | 910 | 88.3 | Plus |
Dgri\GH17123-PA | 245 | GH17123-PA | 1..161 | 5..164 | 164 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rtnl1-PC | 202 | CG33113-PC | 1..202 | 1..202 | 1008 | 100 | Plus |
Rtnl1-PG | 224 | CG33113-PG | 23..224 | 1..202 | 985 | 97.5 | Plus |
Rtnl1-PD | 224 | CG33113-PD | 23..224 | 1..202 | 985 | 97.5 | Plus |
Rtnl1-PF | 595 | CG33113-PF | 398..595 | 5..202 | 985 | 99.5 | Plus |
Rtnl1-PL | 222 | CG33113-PL | 26..222 | 6..202 | 982 | 99.5 | Plus |
Rtnl1-PA | 222 | CG33113-PA | 26..222 | 6..202 | 981 | 99.5 | Plus |
Rtnl1-PJ | 234 | CG33113-PJ | 38..234 | 6..202 | 981 | 99.5 | Plus |
Rtnl1-PI | 234 | CG33113-PI | 38..234 | 6..202 | 981 | 99.5 | Plus |
Rtnl1-PB | 234 | CG33113-PB | 38..234 | 6..202 | 981 | 99.5 | Plus |
Rtnl1-PE | 234 | CG33113-PE | 38..234 | 6..202 | 981 | 99.5 | Plus |
Rtnl1-PH | 607 | CG33113-PH | 411..607 | 6..202 | 981 | 99.5 | Plus |
Rtnl2-PC | 255 | CG1279-PC | 19..216 | 6..202 | 235 | 32.3 | Plus |
Rtnl2-PB | 255 | CG1279-PB | 19..216 | 6..202 | 235 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14630-PA | 234 | GI14630-PA | 37..234 | 5..202 | 952 | 91.9 | Plus |
Dmoj\GI11728-PA | 258 | GI11728-PA | 13..175 | 7..168 | 260 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26483-PA | 571 | GL26483-PA | 374..571 | 5..202 | 969 | 92.9 | Plus |
Dper\GL12168-PA | 319 | GL12168-PA | 26..187 | 6..164 | 211 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28881-PA | 224 | GA28881-PA | 28..224 | 6..202 | 963 | 93.4 | Plus |
Dpse\GA11813-PA | 298 | GA11813-PA | 3..164 | 6..164 | 213 | 30.2 | Plus |
Dpse\GA11813-PB | 321 | GA11813-PB | 26..187 | 6..164 | 213 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18049-PA | 234 | GM18049-PA | 38..234 | 6..202 | 1005 | 99 | Plus |
Dsec\GM10472-PA | 238 | GM10472-PA | 3..205 | 6..202 | 217 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22669-PA | 234 | GD22669-PA | 38..234 | 6..202 | 1005 | 99 | Plus |
Dsim\GD19473-PA | 238 | GD19473-PA | 3..205 | 6..202 | 225 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17140-PA | 236 | GJ17140-PA | 38..234 | 6..202 | 929 | 89.8 | Plus |
Dvir\GJ11400-PA | 265 | GJ11400-PA | 19..208 | 7..193 | 286 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24458-PA | 587 | GK24458-PA | 389..585 | 6..202 | 948 | 91.4 | Plus |
Dwil\GK11074-PA | 247 | GK11074-PA | 16..179 | 6..168 | 292 | 36.6 | Plus |
Dwil\GK19145-PA | 159 | GK19145-PA | 15..156 | 2..143 | 138 | 26.1 | Plus |