Clone RE38252 Report

Search the DGRC for RE38252

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:382
Well:52
Vector:pFlc-1
Associated Gene/TranscriptCG31775-RA
Protein status:RE38252.pep: gold
Sequenced Size:394

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31775 2001-12-14 Blastp of sequenced clone
CG12636 2002-01-01 Sim4 clustering to Release 2
CG31775 2003-01-01 Sim4 clustering to Release 3
CG31775 2008-04-29 Release 5.5 accounting
CG31775 2008-08-15 Release 5.9 accounting
CG31775 2008-12-18 5.12 accounting

Clone Sequence Records

RE38252.complete Sequence

394 bp (394 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071346

> RE38252.complete
TTTCACATTAGCAAGACTAACCGAAGTATCAGCACCATGAAGTTTTTGAT
CCTCTTCATTGCCCTATTCGCCGCGGCCGCTGCCCTACCTCAGTTTGGAT
TCGGCGGTGGATTCGGTGATCAGCAGCAGCAGCAGCAAGGAGGATTTGGA
GGTGGATTTGGTGATCAGCAGCAGCAGCAAGGAGGATTTGGCGGTGGATT
CGGAGGTGGATTCGGTGATCAGCAGCAGCAGCAGCAAGGGGGATTTGGAG
GTGGATTCGGAGGTGGATTCGGTGATCAGCAGCAGCAACAGCAACAAGGC
TGGTAAAAACCAATTCATAGCACCGTCTTAACGCAGATACCTCAATAAAA
ATATGACACCTTTATGATAAAAAAAAAGAAAAAAAAAAAAAAAA

RE38252.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31775-RB 614 CG31775-RB 76..449 2..375 1855 99.7 Plus
CG31775-RA 677 CG31775-RA 76..449 2..375 1855 99.7 Plus
CG42586-RA 703 CG42586-RA 102..475 2..375 1855 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14736017..14736344 375..48 1625 99.7 Minus
chr2L 23010047 chr2L 14740088..14740415 375..48 1625 99.7 Minus
chr2L 23010047 chr2L 14736098..14736250 237..97 365 85.6 Minus
chr2L 23010047 chr2L 14740169..14740321 237..97 365 85.6 Minus
chr2L 23010047 chr2L 14736155..14736295 294..142 350 85 Minus
chr2L 23010047 chr2L 14740226..14740366 294..142 350 85 Minus
chr2L 23010047 chr2L 14736135..14736197 158..96 300 98.4 Minus
chr2L 23010047 chr2L 14740206..14740268 158..96 300 98.4 Minus
chr2L 23010047 chr2L 14736234..14736296 257..195 285 96.8 Minus
chr2L 23010047 chr2L 14740305..14740367 257..195 285 96.8 Minus
chr2L 23010047 chr2L 14736411..14736457 48..2 235 100 Minus
chr2L 23010047 chr2L 14740482..14740528 48..2 235 100 Minus
chr2L 23010047 chr2L 14736098..14736140 138..96 185 95.3 Minus
chr2L 23010047 chr2L 14736254..14736296 294..252 185 95.3 Minus
chr2L 23010047 chr2L 14740169..14740211 138..96 185 95.3 Minus
chr2L 23010047 chr2L 14740325..14740367 294..252 185 95.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14737325..14737652 375..48 1625 99.7 Minus
2L 23513712 2L 14741396..14741723 375..48 1625 99.7 Minus
2L 23513712 2L 14737406..14737558 237..97 365 85.6 Minus
2L 23513712 2L 14741477..14741629 237..97 365 85.6 Minus
2L 23513712 2L 14737463..14737603 294..142 350 85 Minus
2L 23513712 2L 14741534..14741674 294..142 350 85 Minus
2L 23513712 2L 14737443..14737505 158..96 300 98.4 Minus
2L 23513712 2L 14741514..14741576 158..96 300 98.4 Minus
2L 23513712 2L 14737542..14737604 257..195 285 96.8 Minus
2L 23513712 2L 14741613..14741675 257..195 285 96.8 Minus
2L 23513712 2L 14737719..14737765 48..2 235 100 Minus
2L 23513712 2L 14741790..14741836 48..2 235 100 Minus
2L 23513712 2L 14737406..14737448 138..96 185 95.3 Minus
2L 23513712 2L 14737562..14737604 294..252 185 95.3 Minus
2L 23513712 2L 14741477..14741519 138..96 185 95.3 Minus
2L 23513712 2L 14741633..14741675 294..252 185 95.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14741396..14741723 375..48 1625 99.6 Minus
2L 23513712 2L 14737325..14737652 375..48 1625 99.6 Minus
2L 23513712 2L 14741790..14741836 48..2 235 100 Minus
2L 23513712 2L 14737719..14737765 48..2 235 100 Minus
Blast to na_te.dros performed 2019-03-15 20:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1077..1219 218..354 114 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6830 275..298 111 95.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2429 218..297 110 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2453..2505 273..324 109 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2409 275..310 108 77.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6796 275..297 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6775 275..297 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6754 275..297 106 95.7 Plus

RE38252.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:18:00 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14736411..14736457 1..48 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:48 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
CG31775-RA 1..270 37..306 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:00:21 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
CG42586-RA 1..270 37..306 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:10:19 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 1..270 37..306 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 21:16:43 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:13 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 1..270 37..306 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:33 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
CG31775-RA 2..377 2..378 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:00:20 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 2..377 2..378 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:19 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 3..380 1..378 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:40 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
CG31775-RA 2..377 2..378 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:13 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 3..380 1..378 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:00 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14737321..14737651 49..378 99 <- Minus
2L 14737719..14737765 1..48 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:00 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14737321..14737651 49..378 99 <- Minus
2L 14737719..14737765 1..48 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:00 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14737321..14737651 49..378 99 <- Minus
2L 14737719..14737765 1..48 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:19 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14737321..14737651 49..378 99 <- Minus
arm_2L 14737719..14737765 1..48 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:19:50 Download gff for RE38252.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14737321..14737651 49..378 99 <- Minus
2L 14737719..14737765 1..48 97   Minus

RE38252.hyp Sequence

Translation from 3 to 305

> RE38252.hyp
HISKTNRSISTMKFLILFIALFAAAAALPQFGFGGGFGDQQQQQQGGFGG
GFGDQQQQQGGFGGGFGGGFGDQQQQQQGGFGGGFGGGFGDQQQQQQQGW
*

RE38252.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31775-PB 89 CG31775-PB 1..89 12..100 489 100 Plus
CG31775-PA 89 CG31775-PA 1..89 12..100 489 100 Plus
CG42586-PB 89 CG42586-PB 1..89 12..100 489 100 Plus
CG42586-PA 89 CG42586-PA 1..89 12..100 489 100 Plus
CG15282-PB 79 CG15282-PB 1..76 12..99 225 63.7 Plus

RE38252.pep Sequence

Translation from 36 to 305

> RE38252.pep
MKFLILFIALFAAAAALPQFGFGGGFGDQQQQQQGGFGGGFGDQQQQQGG
FGGGFGGGFGDQQQQQQGGFGGGFGGGFGDQQQQQQQGW*

RE38252.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42586-PB 89 CG42586-PB 1..89 1..89 489 100 Plus
CG42586-PA 89 CG42586-PA 1..89 1..89 489 100 Plus
CG31775-PB 89 CG31775-PB 1..89 1..89 489 100 Plus
CG31775-PA 89 CG31775-PA 1..89 1..89 489 100 Plus
CG15282-PB 79 CG15282-PB 1..76 1..88 225 63.7 Plus
CG15282-PC 79 CG15282-PC 1..76 1..88 225 63.7 Plus
CG15282-PA 79 CG15282-PA 1..76 1..88 225 63.7 Plus
CG4440-PB 79 CG4440-PB 1..79 1..75 214 65.9 Plus
CG4440-PA 79 CG4440-PA 1..79 1..75 214 65.9 Plus
CG34165-PB 99 CG34165-PB 1..92 1..87 183 51.5 Plus
CG34165-PA 99 CG34165-PA 1..92 1..87 183 51.5 Plus
CG8157-PB 113 CG8157-PB 1..89 1..81 171 56.4 Plus
CG8157-PA 113 CG8157-PA 1..89 1..81 171 56.4 Plus
CG7294-PA 127 CG7294-PA 1..76 1..79 171 52.9 Plus
CG7299-PC 177 CG7299-PC 1..106 1..81 150 40.6 Plus
CG7299-PA 177 CG7299-PA 1..106 1..81 150 40.6 Plus
CG14327-PB 153 CG14327-PB 87..125 21..79 148 50.8 Plus
CG14327-PA 153 CG14327-PA 87..125 21..79 148 50.8 Plus
TwdlT-PA 286 CG5812-PA 1..98 1..79 143 43.4 Plus
TwdlT-PA 286 CG5812-PA 59..110 21..79 140 57.4 Plus
CG14327-PB 153 CG14327-PB 91..137 21..87 134 41.8 Plus
CG14327-PA 153 CG14327-PA 91..137 21..87 134 41.8 Plus