RE38252.complete Sequence
394 bp (394 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071346
> RE38252.complete
TTTCACATTAGCAAGACTAACCGAAGTATCAGCACCATGAAGTTTTTGAT
CCTCTTCATTGCCCTATTCGCCGCGGCCGCTGCCCTACCTCAGTTTGGAT
TCGGCGGTGGATTCGGTGATCAGCAGCAGCAGCAGCAAGGAGGATTTGGA
GGTGGATTTGGTGATCAGCAGCAGCAGCAAGGAGGATTTGGCGGTGGATT
CGGAGGTGGATTCGGTGATCAGCAGCAGCAGCAGCAAGGGGGATTTGGAG
GTGGATTCGGAGGTGGATTCGGTGATCAGCAGCAGCAACAGCAACAAGGC
TGGTAAAAACCAATTCATAGCACCGTCTTAACGCAGATACCTCAATAAAA
ATATGACACCTTTATGATAAAAAAAAAGAAAAAAAAAAAAAAAA
RE38252.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-RB | 614 | CG31775-RB | 76..449 | 2..375 | 1855 | 99.7 | Plus |
CG31775-RA | 677 | CG31775-RA | 76..449 | 2..375 | 1855 | 99.7 | Plus |
CG42586-RA | 703 | CG42586-RA | 102..475 | 2..375 | 1855 | 99.7 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:16:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 14736017..14736344 | 375..48 | 1625 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 14740088..14740415 | 375..48 | 1625 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 14736098..14736250 | 237..97 | 365 | 85.6 | Minus |
chr2L | 23010047 | chr2L | 14740169..14740321 | 237..97 | 365 | 85.6 | Minus |
chr2L | 23010047 | chr2L | 14736155..14736295 | 294..142 | 350 | 85 | Minus |
chr2L | 23010047 | chr2L | 14740226..14740366 | 294..142 | 350 | 85 | Minus |
chr2L | 23010047 | chr2L | 14736135..14736197 | 158..96 | 300 | 98.4 | Minus |
chr2L | 23010047 | chr2L | 14740206..14740268 | 158..96 | 300 | 98.4 | Minus |
chr2L | 23010047 | chr2L | 14736234..14736296 | 257..195 | 285 | 96.8 | Minus |
chr2L | 23010047 | chr2L | 14740305..14740367 | 257..195 | 285 | 96.8 | Minus |
chr2L | 23010047 | chr2L | 14736411..14736457 | 48..2 | 235 | 100 | Minus |
chr2L | 23010047 | chr2L | 14740482..14740528 | 48..2 | 235 | 100 | Minus |
chr2L | 23010047 | chr2L | 14736098..14736140 | 138..96 | 185 | 95.3 | Minus |
chr2L | 23010047 | chr2L | 14736254..14736296 | 294..252 | 185 | 95.3 | Minus |
chr2L | 23010047 | chr2L | 14740169..14740211 | 138..96 | 185 | 95.3 | Minus |
chr2L | 23010047 | chr2L | 14740325..14740367 | 294..252 | 185 | 95.3 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14737325..14737652 | 375..48 | 1625 | 99.7 | Minus |
2L | 23513712 | 2L | 14741396..14741723 | 375..48 | 1625 | 99.7 | Minus |
2L | 23513712 | 2L | 14737406..14737558 | 237..97 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14741477..14741629 | 237..97 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14737463..14737603 | 294..142 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14741534..14741674 | 294..142 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14737443..14737505 | 158..96 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14741514..14741576 | 158..96 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14737542..14737604 | 257..195 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14741613..14741675 | 257..195 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14737719..14737765 | 48..2 | 235 | 100 | Minus |
2L | 23513712 | 2L | 14741790..14741836 | 48..2 | 235 | 100 | Minus |
2L | 23513712 | 2L | 14737406..14737448 | 138..96 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14737562..14737604 | 294..252 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741477..14741519 | 138..96 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741633..14741675 | 294..252 | 185 | 95.3 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14741396..14741723 | 375..48 | 1625 | 99.6 | Minus |
2L | 23513712 | 2L | 14737325..14737652 | 375..48 | 1625 | 99.6 | Minus |
2L | 23513712 | 2L | 14741790..14741836 | 48..2 | 235 | 100 | Minus |
2L | 23513712 | 2L | 14737719..14737765 | 48..2 | 235 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 20:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1077..1219 | 218..354 | 114 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6830 | 275..298 | 111 | 95.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2429 | 218..297 | 110 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2453..2505 | 273..324 | 109 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2409 | 275..310 | 108 | 77.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6796 | 275..297 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6775 | 275..297 | 106 | 95.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6754 | 275..297 | 106 | 95.7 | Plus |
RE38252.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:18:00 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 14736411..14736457 | 1..48 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:48 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-RA | 1..270 | 37..306 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:00:21 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RA | 1..270 | 37..306 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:10:19 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 1..270 | 37..306 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 21:16:43 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:13 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 1..270 | 37..306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:33 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-RA | 2..377 | 2..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:00:20 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 2..377 | 2..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:19 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 3..380 | 1..378 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:07:40 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-RA | 2..377 | 2..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:13 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 3..380 | 1..378 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:00 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14737321..14737651 | 49..378 | 99 | <- | Minus |
2L | 14737719..14737765 | 1..48 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:00 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14737321..14737651 | 49..378 | 99 | <- | Minus |
2L | 14737719..14737765 | 1..48 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:00 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14737321..14737651 | 49..378 | 99 | <- | Minus |
2L | 14737719..14737765 | 1..48 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:19 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14737321..14737651 | 49..378 | 99 | <- | Minus |
arm_2L | 14737719..14737765 | 1..48 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:19:50 Download gff for
RE38252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14737321..14737651 | 49..378 | 99 | <- | Minus |
2L | 14737719..14737765 | 1..48 | 97 | | Minus |
RE38252.hyp Sequence
Translation from 3 to 305
> RE38252.hyp
HISKTNRSISTMKFLILFIALFAAAAALPQFGFGGGFGDQQQQQQGGFGG
GFGDQQQQQGGFGGGFGGGFGDQQQQQQGGFGGGFGGGFGDQQQQQQQGW
*
RE38252.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-PB | 89 | CG31775-PB | 1..89 | 12..100 | 489 | 100 | Plus |
CG31775-PA | 89 | CG31775-PA | 1..89 | 12..100 | 489 | 100 | Plus |
CG42586-PB | 89 | CG42586-PB | 1..89 | 12..100 | 489 | 100 | Plus |
CG42586-PA | 89 | CG42586-PA | 1..89 | 12..100 | 489 | 100 | Plus |
CG15282-PB | 79 | CG15282-PB | 1..76 | 12..99 | 225 | 63.7 | Plus |
RE38252.pep Sequence
Translation from 36 to 305
> RE38252.pep
MKFLILFIALFAAAAALPQFGFGGGFGDQQQQQQGGFGGGFGDQQQQQGG
FGGGFGGGFGDQQQQQQGGFGGGFGGGFGDQQQQQQQGW*
RE38252.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42586-PB | 89 | CG42586-PB | 1..89 | 1..89 | 489 | 100 | Plus |
CG42586-PA | 89 | CG42586-PA | 1..89 | 1..89 | 489 | 100 | Plus |
CG31775-PB | 89 | CG31775-PB | 1..89 | 1..89 | 489 | 100 | Plus |
CG31775-PA | 89 | CG31775-PA | 1..89 | 1..89 | 489 | 100 | Plus |
CG15282-PB | 79 | CG15282-PB | 1..76 | 1..88 | 225 | 63.7 | Plus |
CG15282-PC | 79 | CG15282-PC | 1..76 | 1..88 | 225 | 63.7 | Plus |
CG15282-PA | 79 | CG15282-PA | 1..76 | 1..88 | 225 | 63.7 | Plus |
CG4440-PB | 79 | CG4440-PB | 1..79 | 1..75 | 214 | 65.9 | Plus |
CG4440-PA | 79 | CG4440-PA | 1..79 | 1..75 | 214 | 65.9 | Plus |
CG34165-PB | 99 | CG34165-PB | 1..92 | 1..87 | 183 | 51.5 | Plus |
CG34165-PA | 99 | CG34165-PA | 1..92 | 1..87 | 183 | 51.5 | Plus |
CG8157-PB | 113 | CG8157-PB | 1..89 | 1..81 | 171 | 56.4 | Plus |
CG8157-PA | 113 | CG8157-PA | 1..89 | 1..81 | 171 | 56.4 | Plus |
CG7294-PA | 127 | CG7294-PA | 1..76 | 1..79 | 171 | 52.9 | Plus |
CG7299-PC | 177 | CG7299-PC | 1..106 | 1..81 | 150 | 40.6 | Plus |
CG7299-PA | 177 | CG7299-PA | 1..106 | 1..81 | 150 | 40.6 | Plus |
CG14327-PB | 153 | CG14327-PB | 87..125 | 21..79 | 148 | 50.8 | Plus |
CG14327-PA | 153 | CG14327-PA | 87..125 | 21..79 | 148 | 50.8 | Plus |
TwdlT-PA | 286 | CG5812-PA | 1..98 | 1..79 | 143 | 43.4 | Plus |
TwdlT-PA | 286 | CG5812-PA | 59..110 | 21..79 | 140 | 57.4 | Plus |
CG14327-PB | 153 | CG14327-PB | 91..137 | 21..87 | 134 | 41.8 | Plus |
CG14327-PA | 153 | CG14327-PA | 91..137 | 21..87 | 134 | 41.8 | Plus |