BDGP Sequence Production Resources |
Search the DGRC for RE38504
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 385 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5872-RA |
Protein status: | RE38504.pep: gold |
Preliminary Size: | 1357 |
Sequenced Size: | 1868 |
Gene | Date | Evidence |
---|---|---|
CG5872 | 2001-12-14 | Blastp of sequenced clone |
CG5872 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5872 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5872 | 2008-04-29 | Release 5.5 accounting |
CG5872 | 2008-08-15 | Release 5.9 accounting |
CG5872 | 2008-12-18 | 5.12 accounting |
1868 bp (1868 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071347
> RE38504.complete GAGGTTAGCTGCGACCACACTGCTCTGCCGACGCGCAAAAGCAAACCAAA ACTTTATCAAATAAAATCCATTTATACATAGATCTCTTCATTAAAATAGT AAAATTTTATTAAGTTGTAAAAAAGATGACGTGCGGAAAATGTCGCGGTC ACAAGGAAAGGAGCGTGAAGTGCCTTTTAGCCGCTTTGGACACAATCAAA GAGCACGCCTTAATGATGCAACGAGACTCAGAGGAAAGTTCGAGGACCAT AGAACAGCTAAAGATCCACAATGAAAAGCTGCACAAGGCCTTGGACTTGC TGAAGGAGCGGCAGGCATCCTTGGTCCAGGCGGAGAAGCGCAGGAAGCTG TTGCCCACGAAGATCAAGGATGACATATCGCCGCAGACACAAAGCCAAAA CTCCCTTAACATGAACATAGCCATTAGCAACATAGATCTATCCGACGAGG ACCAGGAAGTGGAGGAAGACGAGAGCATTACCGAAACGGAGACCACTGTC CTCAGCCCGCGCAAACTACGATTGCCAAGTCGAAAGTCGGACATCCGGGA TCTGGAGAATGTGCAGCCGAGCAATGTTTCTGCGGTGGGAAATAGTTGGA CCCGCAAGACACCCAAGAATCAGGGAGTCCTTACAAAGCTATCACTCACA CACAAGAGCAACAACTTGAACTTGAAGCAAACTCGCCTTAAATTCGAAGC AAATAGGACGAGCACCAGTGAAAAGGAAGTCATAGAGGAGAGTCCCAATT TGAGCACCAATCTGAAGAGATCTAGGCCGCCGAGATCTTTAATGCAGAGA ACAGACAACACGAGCGTTTCAAACGCAGACGACTCGCTTACCACCACCAG CAATAGCACAGTCAAGACCATAAAACCAAGTTTTCAGTTGGACATGGACG AGTTTAAATTGGACAGCTCGGAAGATCAGATAATGCCCCCACCGAACACG CCGCCAGGTTTAAAGATCAGCAACACCTCGGATAGTGTAGTTTTATTGAC GCCTGCGACCCAGGATATAATCTTTGTGAATGATACACTCGAAGATGTGA GCAAACTGGGCACCATGGATGTTCTGGCCGAAATTATGAAGGACGATGAC GACACGTGCTCGAGTGCTTTAAGACAGTACGAGAAGGTTATAATTGACCA GCAGAAGCAAAACCTACCAAATGCCCCAAAAGTTGAGAGCGTCATTCCAA TTACCAAAGTCGTGAAAATGGAACCTATATCCCAGCCAGAAACAGACTTA GGCAACGAATCAACAAAACTGCCCGAGGATATTGAAAAGTATCTTATGGA TATCAAAGAAGAGGATAGTAGGCATTCGGAGGAGGAGTTTCCGCGACCGA TTTTGATCAAGGAGGAACCTGAGGCGACGGTCAAAGAACGTTTTAACATT GAGTGCGTCGAGTGCGAAAAGTTCATCAATTTTATGGGTTCAAATCTGAC AGACGAGAAGATCAAAGATTATTTGGCAAAGTGCCGGCATGAAGACGCTC GCAGTTCAACTCCGCCGGGATTCTGGAATCCACACATGGTTTCCTTCGCA GAAGGCGATCCACGCAACGAAGTGTTGATAGACACTCGGTTTTGGGACCA GAGATAAAACAAATGACATTTAGGCAATCAATTTACAAATAGTTTTTCAG TTTAGACCATTTCATTTATTATTGATTTTGTTAGTTCTCAATTTGATCAC ATTTGATTCACAAGTTTCCTCGCTTGGCTTGTTCAATTTCAATGGCCGTG AACAAGGACTTAAAGTTGCCAGCGCCAAATCCCTGAAATAGTAATGATCA TGATTTACTTGTTCTTAGCAACAGTAGGTTAAGCAATAAATCTTACATTG TGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5872-RA | 2012 | CG5872-RA | 53..1904 | 2..1853 | 9260 | 100 | Plus |
CG11796-RA | 1301 | CG11796-RA | 1163..1301 | 1782..1644 | 695 | 100 | Minus |
CG11796-RB | 1516 | CG11796-RB | 1378..1516 | 1782..1644 | 695 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20426261..20426884 | 798..1421 | 3120 | 100 | Plus |
chr3L | 24539361 | chr3L | 20425536..20426121 | 214..799 | 2930 | 100 | Plus |
chr3L | 24539361 | chr3L | 20426947..20427379 | 1420..1852 | 2165 | 100 | Plus |
chr3L | 24539361 | chr3L | 20425267..20425478 | 2..213 | 1060 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20437252..20437875 | 798..1421 | 3120 | 100 | Plus |
3L | 28110227 | 3L | 20436527..20437112 | 214..799 | 2930 | 100 | Plus |
3L | 28110227 | 3L | 20437938..20438371 | 1420..1853 | 2170 | 100 | Plus |
3L | 28110227 | 3L | 20436258..20436469 | 2..213 | 1060 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20430352..20430975 | 798..1421 | 3120 | 100 | Plus |
3L | 28103327 | 3L | 20429627..20430212 | 214..799 | 2930 | 100 | Plus |
3L | 28103327 | 3L | 20431038..20431471 | 1420..1853 | 2170 | 100 | Plus |
3L | 28103327 | 3L | 20429358..20429569 | 2..213 | 1060 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 6362..6411 | 1678..1627 | 120 | 73.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20426949..20427379 | 1422..1852 | 100 | Plus | |
chr3L | 20425266..20425478 | 1..213 | 99 | -> | Plus |
chr3L | 20425536..20426121 | 214..799 | 100 | -> | Plus |
chr3L | 20426263..20426884 | 800..1421 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 1..1482 | 126..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 1..1482 | 126..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 1..1482 | 126..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 1..1482 | 126..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 1..1482 | 126..1607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 2..1849 | 2..1849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 2..1849 | 2..1849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 8..1859 | 1..1852 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 2..1849 | 2..1849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5872-RA | 8..1859 | 1..1852 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20436257..20436469 | 1..213 | 99 | -> | Plus |
3L | 20436527..20437112 | 214..799 | 100 | -> | Plus |
3L | 20437254..20437875 | 800..1421 | 100 | -> | Plus |
3L | 20437940..20438370 | 1422..1852 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20436257..20436469 | 1..213 | 99 | -> | Plus |
3L | 20436527..20437112 | 214..799 | 100 | -> | Plus |
3L | 20437254..20437875 | 800..1421 | 100 | -> | Plus |
3L | 20437940..20438370 | 1422..1852 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20436257..20436469 | 1..213 | 99 | -> | Plus |
3L | 20436527..20437112 | 214..799 | 100 | -> | Plus |
3L | 20437254..20437875 | 800..1421 | 100 | -> | Plus |
3L | 20437940..20438370 | 1422..1852 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20429357..20429569 | 1..213 | 99 | -> | Plus |
arm_3L | 20429627..20430212 | 214..799 | 100 | -> | Plus |
arm_3L | 20430354..20430975 | 800..1421 | 100 | -> | Plus |
arm_3L | 20431040..20431470 | 1422..1852 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20429357..20429569 | 1..213 | 99 | -> | Plus |
3L | 20429627..20430212 | 214..799 | 100 | -> | Plus |
3L | 20430354..20430975 | 800..1421 | 100 | -> | Plus |
3L | 20431040..20431470 | 1422..1852 | 100 | Plus |
Translation from 125 to 1606
> RE38504.pep MTCGKCRGHKERSVKCLLAALDTIKEHALMMQRDSEESSRTIEQLKIHNE KLHKALDLLKERQASLVQAEKRRKLLPTKIKDDISPQTQSQNSLNMNIAI SNIDLSDEDQEVEEDESITETETTVLSPRKLRLPSRKSDIRDLENVQPSN VSAVGNSWTRKTPKNQGVLTKLSLTHKSNNLNLKQTRLKFEANRTSTSEK EVIEESPNLSTNLKRSRPPRSLMQRTDNTSVSNADDSLTTTSNSTVKTIK PSFQLDMDEFKLDSSEDQIMPPPNTPPGLKISNTSDSVVLLTPATQDIIF VNDTLEDVSKLGTMDVLAEIMKDDDDTCSSALRQYEKVIIDQQKQNLPNA PKVESVIPITKVVKMEPISQPETDLGNESTKLPEDIEKYLMDIKEEDSRH SEEEFPRPILIKEEPEATVKERFNIECVECEKFINFMGSNLTDEKIKDYL AKCRHEDARSSTPPGFWNPHMVSFAEGDPRNEVLIDTRFWDQR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10340-PA | 494 | GF10340-PA | 1..486 | 1..491 | 1668 | 68.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16114-PA | 496 | GG16114-PA | 1..493 | 1..493 | 2287 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14547-PA | 505 | GH14547-PA | 1..503 | 1..493 | 878 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CtIP-PA | 493 | CG5872-PA | 1..493 | 1..493 | 2521 | 100 | Plus |
CtIP-PB | 245 | CG5872-PB | 1..228 | 1..228 | 1131 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13395-PA | 508 | GI13395-PA | 1..506 | 1..493 | 850 | 42.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12787-PA | 501 | GL12787-PA | 1..501 | 1..493 | 1520 | 62.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19194-PA | 501 | GA19194-PA | 1..501 | 1..493 | 1528 | 62.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22292-PA | 496 | GM22292-PA | 1..493 | 1..493 | 2383 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14886-PA | 497 | GD14886-PA | 1..493 | 1..489 | 2114 | 86 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11520-PA | 501 | GJ11520-PA | 1..499 | 1..493 | 872 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12289-PA | 497 | GK12289-PA | 1..494 | 1..480 | 939 | 46.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23236-PA | 440 | GE23236-PA | 1..434 | 1..434 | 1883 | 88 | Plus |
Translation from 125 to 1606
> RE38504.hyp MTCGKCRGHKERSVKCLLAALDTIKEHALMMQRDSEESSRTIEQLKIHNE KLHKALDLLKERQASLVQAEKRRKLLPTKIKDDISPQTQSQNSLNMNIAI SNIDLSDEDQEVEEDESITETETTVLSPRKLRLPSRKSDIRDLENVQPSN VSAVGNSWTRKTPKNQGVLTKLSLTHKSNNLNLKQTRLKFEANRTSTSEK EVIEESPNLSTNLKRSRPPRSLMQRTDNTSVSNADDSLTTTSNSTVKTIK PSFQLDMDEFKLDSSEDQIMPPPNTPPGLKISNTSDSVVLLTPATQDIIF VNDTLEDVSKLGTMDVLAEIMKDDDDTCSSALRQYEKVIIDQQKQNLPNA PKVESVIPITKVVKMEPISQPETDLGNESTKLPEDIEKYLMDIKEEDSRH SEEEFPRPILIKEEPEATVKERFNIECVECEKFINFMGSNLTDEKIKDYL AKCRHEDARSSTPPGFWNPHMVSFAEGDPRNEVLIDTRFWDQR*