Clone RE38504 Report

Search the DGRC for RE38504

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:385
Well:4
Vector:pFlc-1
Associated Gene/TranscriptCG5872-RA
Protein status:RE38504.pep: gold
Preliminary Size:1357
Sequenced Size:1868

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5872 2001-12-14 Blastp of sequenced clone
CG5872 2002-01-01 Sim4 clustering to Release 2
CG5872 2003-01-01 Sim4 clustering to Release 3
CG5872 2008-04-29 Release 5.5 accounting
CG5872 2008-08-15 Release 5.9 accounting
CG5872 2008-12-18 5.12 accounting

Clone Sequence Records

RE38504.complete Sequence

1868 bp (1868 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071347

> RE38504.complete
GAGGTTAGCTGCGACCACACTGCTCTGCCGACGCGCAAAAGCAAACCAAA
ACTTTATCAAATAAAATCCATTTATACATAGATCTCTTCATTAAAATAGT
AAAATTTTATTAAGTTGTAAAAAAGATGACGTGCGGAAAATGTCGCGGTC
ACAAGGAAAGGAGCGTGAAGTGCCTTTTAGCCGCTTTGGACACAATCAAA
GAGCACGCCTTAATGATGCAACGAGACTCAGAGGAAAGTTCGAGGACCAT
AGAACAGCTAAAGATCCACAATGAAAAGCTGCACAAGGCCTTGGACTTGC
TGAAGGAGCGGCAGGCATCCTTGGTCCAGGCGGAGAAGCGCAGGAAGCTG
TTGCCCACGAAGATCAAGGATGACATATCGCCGCAGACACAAAGCCAAAA
CTCCCTTAACATGAACATAGCCATTAGCAACATAGATCTATCCGACGAGG
ACCAGGAAGTGGAGGAAGACGAGAGCATTACCGAAACGGAGACCACTGTC
CTCAGCCCGCGCAAACTACGATTGCCAAGTCGAAAGTCGGACATCCGGGA
TCTGGAGAATGTGCAGCCGAGCAATGTTTCTGCGGTGGGAAATAGTTGGA
CCCGCAAGACACCCAAGAATCAGGGAGTCCTTACAAAGCTATCACTCACA
CACAAGAGCAACAACTTGAACTTGAAGCAAACTCGCCTTAAATTCGAAGC
AAATAGGACGAGCACCAGTGAAAAGGAAGTCATAGAGGAGAGTCCCAATT
TGAGCACCAATCTGAAGAGATCTAGGCCGCCGAGATCTTTAATGCAGAGA
ACAGACAACACGAGCGTTTCAAACGCAGACGACTCGCTTACCACCACCAG
CAATAGCACAGTCAAGACCATAAAACCAAGTTTTCAGTTGGACATGGACG
AGTTTAAATTGGACAGCTCGGAAGATCAGATAATGCCCCCACCGAACACG
CCGCCAGGTTTAAAGATCAGCAACACCTCGGATAGTGTAGTTTTATTGAC
GCCTGCGACCCAGGATATAATCTTTGTGAATGATACACTCGAAGATGTGA
GCAAACTGGGCACCATGGATGTTCTGGCCGAAATTATGAAGGACGATGAC
GACACGTGCTCGAGTGCTTTAAGACAGTACGAGAAGGTTATAATTGACCA
GCAGAAGCAAAACCTACCAAATGCCCCAAAAGTTGAGAGCGTCATTCCAA
TTACCAAAGTCGTGAAAATGGAACCTATATCCCAGCCAGAAACAGACTTA
GGCAACGAATCAACAAAACTGCCCGAGGATATTGAAAAGTATCTTATGGA
TATCAAAGAAGAGGATAGTAGGCATTCGGAGGAGGAGTTTCCGCGACCGA
TTTTGATCAAGGAGGAACCTGAGGCGACGGTCAAAGAACGTTTTAACATT
GAGTGCGTCGAGTGCGAAAAGTTCATCAATTTTATGGGTTCAAATCTGAC
AGACGAGAAGATCAAAGATTATTTGGCAAAGTGCCGGCATGAAGACGCTC
GCAGTTCAACTCCGCCGGGATTCTGGAATCCACACATGGTTTCCTTCGCA
GAAGGCGATCCACGCAACGAAGTGTTGATAGACACTCGGTTTTGGGACCA
GAGATAAAACAAATGACATTTAGGCAATCAATTTACAAATAGTTTTTCAG
TTTAGACCATTTCATTTATTATTGATTTTGTTAGTTCTCAATTTGATCAC
ATTTGATTCACAAGTTTCCTCGCTTGGCTTGTTCAATTTCAATGGCCGTG
AACAAGGACTTAAAGTTGCCAGCGCCAAATCCCTGAAATAGTAATGATCA
TGATTTACTTGTTCTTAGCAACAGTAGGTTAAGCAATAAATCTTACATTG
TGAAAAAAAAAAAAAAAA

RE38504.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5872-RA 2012 CG5872-RA 53..1904 2..1853 9260 100 Plus
CG11796-RA 1301 CG11796-RA 1163..1301 1782..1644 695 100 Minus
CG11796-RB 1516 CG11796-RB 1378..1516 1782..1644 695 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20426261..20426884 798..1421 3120 100 Plus
chr3L 24539361 chr3L 20425536..20426121 214..799 2930 100 Plus
chr3L 24539361 chr3L 20426947..20427379 1420..1852 2165 100 Plus
chr3L 24539361 chr3L 20425267..20425478 2..213 1060 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20437252..20437875 798..1421 3120 100 Plus
3L 28110227 3L 20436527..20437112 214..799 2930 100 Plus
3L 28110227 3L 20437938..20438371 1420..1853 2170 100 Plus
3L 28110227 3L 20436258..20436469 2..213 1060 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20430352..20430975 798..1421 3120 100 Plus
3L 28103327 3L 20429627..20430212 214..799 2930 100 Plus
3L 28103327 3L 20431038..20431471 1420..1853 2170 100 Plus
3L 28103327 3L 20429358..20429569 2..213 1060 100 Plus
Blast to na_te.dros performed 2019-03-16 02:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 6362..6411 1678..1627 120 73.1 Minus

RE38504.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:03:38 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20426949..20427379 1422..1852 100   Plus
chr3L 20425266..20425478 1..213 99 -> Plus
chr3L 20425536..20426121 214..799 100 -> Plus
chr3L 20426263..20426884 800..1421 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:54 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 1..1482 126..1607 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:56 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 1..1482 126..1607 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:11 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 1..1482 126..1607 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:13 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 1..1482 126..1607 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:56:07 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 1..1482 126..1607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:36:42 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 2..1849 2..1849 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:56 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 2..1849 2..1849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:11 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 8..1859 1..1852 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:13 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 2..1849 2..1849 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:56:07 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 8..1859 1..1852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:38 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20436257..20436469 1..213 99 -> Plus
3L 20436527..20437112 214..799 100 -> Plus
3L 20437254..20437875 800..1421 100 -> Plus
3L 20437940..20438370 1422..1852 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:38 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20436257..20436469 1..213 99 -> Plus
3L 20436527..20437112 214..799 100 -> Plus
3L 20437254..20437875 800..1421 100 -> Plus
3L 20437940..20438370 1422..1852 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:38 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20436257..20436469 1..213 99 -> Plus
3L 20436527..20437112 214..799 100 -> Plus
3L 20437254..20437875 800..1421 100 -> Plus
3L 20437940..20438370 1422..1852 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:11 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20429357..20429569 1..213 99 -> Plus
arm_3L 20429627..20430212 214..799 100 -> Plus
arm_3L 20430354..20430975 800..1421 100 -> Plus
arm_3L 20431040..20431470 1422..1852 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:05 Download gff for RE38504.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20429357..20429569 1..213 99 -> Plus
3L 20429627..20430212 214..799 100 -> Plus
3L 20430354..20430975 800..1421 100 -> Plus
3L 20431040..20431470 1422..1852 100   Plus

RE38504.pep Sequence

Translation from 125 to 1606

> RE38504.pep
MTCGKCRGHKERSVKCLLAALDTIKEHALMMQRDSEESSRTIEQLKIHNE
KLHKALDLLKERQASLVQAEKRRKLLPTKIKDDISPQTQSQNSLNMNIAI
SNIDLSDEDQEVEEDESITETETTVLSPRKLRLPSRKSDIRDLENVQPSN
VSAVGNSWTRKTPKNQGVLTKLSLTHKSNNLNLKQTRLKFEANRTSTSEK
EVIEESPNLSTNLKRSRPPRSLMQRTDNTSVSNADDSLTTTSNSTVKTIK
PSFQLDMDEFKLDSSEDQIMPPPNTPPGLKISNTSDSVVLLTPATQDIIF
VNDTLEDVSKLGTMDVLAEIMKDDDDTCSSALRQYEKVIIDQQKQNLPNA
PKVESVIPITKVVKMEPISQPETDLGNESTKLPEDIEKYLMDIKEEDSRH
SEEEFPRPILIKEEPEATVKERFNIECVECEKFINFMGSNLTDEKIKDYL
AKCRHEDARSSTPPGFWNPHMVSFAEGDPRNEVLIDTRFWDQR*

RE38504.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10340-PA 494 GF10340-PA 1..486 1..491 1668 68.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16114-PA 496 GG16114-PA 1..493 1..493 2287 89 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14547-PA 505 GH14547-PA 1..503 1..493 878 42.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CtIP-PA 493 CG5872-PA 1..493 1..493 2521 100 Plus
CtIP-PB 245 CG5872-PB 1..228 1..228 1131 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13395-PA 508 GI13395-PA 1..506 1..493 850 42.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12787-PA 501 GL12787-PA 1..501 1..493 1520 62.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19194-PA 501 GA19194-PA 1..501 1..493 1528 62.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22292-PA 496 GM22292-PA 1..493 1..493 2383 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14886-PA 497 GD14886-PA 1..493 1..489 2114 86 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11520-PA 501 GJ11520-PA 1..499 1..493 872 43.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12289-PA 497 GK12289-PA 1..494 1..480 939 46.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23236-PA 440 GE23236-PA 1..434 1..434 1883 88 Plus

RE38504.hyp Sequence

Translation from 125 to 1606

> RE38504.hyp
MTCGKCRGHKERSVKCLLAALDTIKEHALMMQRDSEESSRTIEQLKIHNE
KLHKALDLLKERQASLVQAEKRRKLLPTKIKDDISPQTQSQNSLNMNIAI
SNIDLSDEDQEVEEDESITETETTVLSPRKLRLPSRKSDIRDLENVQPSN
VSAVGNSWTRKTPKNQGVLTKLSLTHKSNNLNLKQTRLKFEANRTSTSEK
EVIEESPNLSTNLKRSRPPRSLMQRTDNTSVSNADDSLTTTSNSTVKTIK
PSFQLDMDEFKLDSSEDQIMPPPNTPPGLKISNTSDSVVLLTPATQDIIF
VNDTLEDVSKLGTMDVLAEIMKDDDDTCSSALRQYEKVIIDQQKQNLPNA
PKVESVIPITKVVKMEPISQPETDLGNESTKLPEDIEKYLMDIKEEDSRH
SEEEFPRPILIKEEPEATVKERFNIECVECEKFINFMGSNLTDEKIKDYL
AKCRHEDARSSTPPGFWNPHMVSFAEGDPRNEVLIDTRFWDQR*

RE38504.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5872-PA 493 CG5872-PA 1..493 1..493 2521 100 Plus
CG5872-PB 245 CG5872-PB 1..228 1..228 1131 99.1 Plus