BDGP Sequence Production Resources |
Search the DGRC for RE38560
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 385 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | ktub-RB |
Protein status: | RE38560.pep: gold |
Sequenced Size: | 2510 |
Gene | Date | Evidence |
---|---|---|
CG9398 | 2002-12-10 | Blastp of sequenced clone |
king-tubby | 2008-04-29 | Release 5.5 accounting |
king-tubby | 2008-08-15 | Release 5.9 accounting |
king-tubby | 2008-12-18 | 5.12 accounting |
2510 bp (2510 high quality bases) assembled on 2006-06-05
GenBank Submission: BT003201
> RE38560.complete AGTTGTTGTTTTGGCAGCGTGCGGTTCGGTCGACGGGTTACATCGCCTTC TCTCCTCTACCAAAATAAAGAGGCGCCAAATTCAATCAATTGGACAATAT CACACGCAACTCAACGGGCACGAAAGTGTTTGTCAAACAACATAGATTGT ATAACATTATAAATATATGCATATTCAGGCGGTACTCGCTCAGTGGCTAA AGCAAACATTCAGTGCCAGCGATCCGGAGAATTCCGATCGATCGCGTCGG TACAAAAAAAATTGAGCGAGAACAGGAAGAGCCGGCTGTTGGCTTCAGTC TACAAATCCTCACCCTCGTGAACACCCCTTGATTTTTTTGTTGTCGCGTG TGCTGCCGTACTACACTACCACAAACTACAAAATATATACCATACCATAC AAACTGACGCCAGGTGTGCTAAATTCATAGATTCTTCTTCAATTATTTTG GTGCCCCATCGGTTTTTGTTTTGCTGCATTCATTCGCATTCGAAAAGTCG CTCTTCAACGCAAATCCCAAAACAGCTGTCACTCCCGAATATTTGCCAAA TGCCTCTTCATCGGATCATCTGAATCGCGCGTAGTTAAGTGAAAATCGTC AGAGGATTTTGATTGCCTTCTGAAATCTACAGCCATAACTGCAAAAATGT CCGGAATCAACAGTCGTAATCAGAAAATGGAACAGCAGCGCCAGCTGATG GAGGCCTACATCCGGCAGAAGAGAGCCTCGCCGGGAATGGTCCAGGCCAG CGATTTGCAGATCAATCGACCCATGTCCGGGATGCGCAGCAACAGCCGGG AGCTGCACGCCTACGACGGACCCATGCAGTTCATCAGTTCGCCCCAAAAT CCGGACCAGATACTCACCAACGGCAGTCCCGGCGGCATCAATCCGGTTGC CATGAACACGAGTCGCAATCACTCGAATAACATGCGCAGCCTAAGCACCA TCAACCAGGAGGCTGATCTCATAGAGGAGATCTCATCGCACGAGTTGGAG GACGAGGAGAGCAGTCCGGTGACGGTGATTGAGCAGCACCAGCAGTCAGC CTCGCACAGCGCCAACTCGACGCAATCGCAGAAACCACGTGCCCGCCAGC ATTCCTTTAGCGACAATCTGGACGAGGATGACTACACCAATCGCAATGTG GCCGGTGCTGCTCCAGTGCGTCCCGCCGGCATGGCCTCATCGCCGTACAA GGACGCAACGCTGGACGGCAGCAGCAACGGGACGGGGAACGGAACTGGCG GCGAGTCCGAGGGAGATGTCATCGGCAATATCGACCAGTTCGTGATGCAA CCAGCGCCACAGGGAGTGCTCTACAAGTGCCGCATTACGCGGGACAGGAA GGGCATGGACCGCGGCCTCTTTCCCATCTACTACTTGCATCTGGAACGTG ACTACGGCAAGAAGATATTTCTGCTGGGAGGTCGCAAACGCAAGAAGAGC AAGACATCCAACTACATTGTCAGCTGCGATCCCACGGATTTGTCTCGCAA TGCCGATGGCTTCTGTGGCAAACTGCGCTCTAATGTCTTTGGCACATCCT TCACGGTCTTTGACAACGGCAACAAGGAGAGCACAGAGAGTCCTCGACTC GACTTGGCCGTCATCATTTATGACACCAACATTTTGGGATTCAAGGGGCC ACGCAACATGACTGTTATACTGCCCGGCATGACTGAGGACGATCAGCGTG TCAAGATCAGTTCGGCGGATCCCAAACAGCAGGGCATCCTTGACCTATGG AAAATGAAGAACATGGACAACATCGTGGAGCTGCACAATAAGACGCCAGT GTGGAACGATGAAACCCAATCGTATGTGCTCAACTTTCATGGGCGCGTCA CCCAGGCGTCGGTGAAGAACTTTCAGTTGGTCCACGACTCCGATCCGGAG TACATAGTAATGCAGTTCGGCCGCACCTCGGAGGACGTCTTCACCATGGA CTATCGCTATCCCCTGTGCGCCATGCAGGCATTCGCCATTGCCCTCAGTA GTTTCGATGGCAAAATAGCCTGCGAGTGAGCTGGCTGGGATCCTCGGGTT GGCCCGTTGCCTTATGTACAGCTGATTATCTGGAGTGCGGATCAAGTCGC TCCGGGCGGATCATTGTTGAAATTATTATCGGAAATCTAGTCACTCGAAG TCGGGTTTTGGTAGACCATCGTTGAAATGAGTAATGTAGTTAGTAGCTAC TCGTATCGCGTATCATTGTATAACGTATATTCAGAATGTGCTCACCGATT TTATAAGAAATTATTTAGGACAGGTCCTACAACTTTGTAAATCTAAATGT GCCCCTTTTAGCGATAAGTTCACTTGTAAGCGATTCGAAGTCAAGGTCAT TTAAAGTAATATCAGTTTTATAATCAGCATATAGCAACAAATCAAGGACT AATGTAAACTATTTAAAATGCCACTACTATTAGTCGGTAAGAGAGCACTA CTAACTTGTACTAAGCTCTAAATAAATACAAACAGCTATTGATCAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17009413..17010147 | 1758..2494 | 3530 | 98.9 | Plus |
chr2R | 21145070 | chr2R | 16988397..16989084 | 1..688 | 3380 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 17008445..17008915 | 962..1432 | 2310 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 17008071..17008348 | 685..962 | 1375 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 17008969..17009162 | 1429..1622 | 910 | 97.9 | Plus |
chr2R | 21145070 | chr2R | 17009219..17009356 | 1622..1759 | 675 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21122968..21123710 | 1758..2500 | 3715 | 100 | Plus |
2R | 25286936 | 2R | 21101930..21102617 | 1..688 | 3440 | 100 | Plus |
2R | 25286936 | 2R | 21122000..21122470 | 962..1432 | 2355 | 100 | Plus |
2R | 25286936 | 2R | 21121626..21121903 | 685..962 | 1390 | 100 | Plus |
2R | 25286936 | 2R | 21122524..21122717 | 1429..1622 | 970 | 100 | Plus |
2R | 25286936 | 2R | 21122774..21122911 | 1622..1759 | 690 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21124167..21124909 | 1758..2500 | 3715 | 100 | Plus |
2R | 25260384 | 2R | 21103129..21103816 | 1..688 | 3440 | 100 | Plus |
2R | 25260384 | 2R | 21123199..21123669 | 962..1432 | 2355 | 100 | Plus |
2R | 25260384 | 2R | 21122825..21123102 | 685..962 | 1390 | 100 | Plus |
2R | 25260384 | 2R | 21123723..21123916 | 1429..1622 | 970 | 100 | Plus |
2R | 25260384 | 2R | 21123973..21124110 | 1622..1759 | 690 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16988397..16989084 | 1..688 | 99 | -> | Plus |
chr2R | 17008075..17008348 | 689..962 | 99 | -> | Plus |
chr2R | 17008446..17008913 | 963..1430 | 99 | -> | Plus |
chr2R | 17008971..17009161 | 1431..1621 | 97 | -> | Plus |
chr2R | 17009219..17009356 | 1622..1759 | 99 | -> | Plus |
chr2R | 17009415..17010147 | 1760..2494 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
king-tubby-RB | 1..1383 | 647..2029 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
king-tubby-RB | 1..1383 | 647..2029 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ktub-RB | 1..1383 | 647..2029 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
king-tubby-RB | 1..1383 | 647..2029 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ktub-RB | 1..1383 | 647..2029 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
king-tubby-RB | 1..2494 | 1..2494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
king-tubby-RB | 1..2494 | 1..2494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ktub-RB | 3..2496 | 1..2494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
king-tubby-RB | 1..2494 | 1..2494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ktub-RB | 3..2496 | 1..2494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21101930..21102617 | 1..688 | 100 | -> | Plus |
2R | 21121630..21121903 | 689..962 | 100 | -> | Plus |
2R | 21122001..21122468 | 963..1430 | 100 | -> | Plus |
2R | 21122526..21122716 | 1431..1621 | 100 | -> | Plus |
2R | 21122774..21122911 | 1622..1759 | 100 | -> | Plus |
2R | 21122970..21123704 | 1760..2494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21101930..21102617 | 1..688 | 100 | -> | Plus |
2R | 21121630..21121903 | 689..962 | 100 | -> | Plus |
2R | 21122001..21122468 | 963..1430 | 100 | -> | Plus |
2R | 21122526..21122716 | 1431..1621 | 100 | -> | Plus |
2R | 21122774..21122911 | 1622..1759 | 100 | -> | Plus |
2R | 21122970..21123704 | 1760..2494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21101930..21102617 | 1..688 | 100 | -> | Plus |
2R | 21121630..21121903 | 689..962 | 100 | -> | Plus |
2R | 21122001..21122468 | 963..1430 | 100 | -> | Plus |
2R | 21122526..21122716 | 1431..1621 | 100 | -> | Plus |
2R | 21122774..21122911 | 1622..1759 | 100 | -> | Plus |
2R | 21122970..21123704 | 1760..2494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16989435..16990122 | 1..688 | 100 | -> | Plus |
arm_2R | 17009135..17009408 | 689..962 | 100 | -> | Plus |
arm_2R | 17009506..17009973 | 963..1430 | 100 | -> | Plus |
arm_2R | 17010031..17010221 | 1431..1621 | 100 | -> | Plus |
arm_2R | 17010279..17010416 | 1622..1759 | 100 | -> | Plus |
arm_2R | 17010475..17011209 | 1760..2494 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21103129..21103816 | 1..688 | 100 | -> | Plus |
2R | 21122829..21123102 | 689..962 | 100 | -> | Plus |
2R | 21123200..21123667 | 963..1430 | 100 | -> | Plus |
2R | 21123725..21123915 | 1431..1621 | 100 | -> | Plus |
2R | 21123973..21124110 | 1622..1759 | 100 | -> | Plus |
2R | 21124169..21124903 | 1760..2494 | 100 | Plus |
Translation from 646 to 2028
> RE38560.hyp MSGINSRNQKMEQQRQLMEAYIRQKRASPGMVQASDLQINRPMSGMRSNS RELHAYDGPMQFISSPQNPDQILTNGSPGGINPVAMNTSRNHSNNMRSLS TINQEADLIEEISSHELEDEESSPVTVIEQHQQSASHSANSTQSQKPRAR QHSFSDNLDEDDYTNRNVAGAAPVRPAGMASSPYKDATLDGSSNGTGNGT GGESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLE RDYGKKIFLLGGRKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGT SFTVFDNGNKESTESPRLDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQ RVKISSADPKQQGILDLWKMKNMDNIVELHNKTPVWNDETQSYVLNFHGR VTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIAL SSFDGKIACE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ktub-PB | 460 | CG9398-PB | 1..460 | 1..460 | 2403 | 100 | Plus |
ktub-PC | 469 | CG9398-PC | 1..469 | 1..460 | 2383 | 98.1 | Plus |
Tusp-PG | 1430 | CG5586-PG | 1354..1424 | 379..452 | 195 | 50 | Plus |
Tusp-PE | 1432 | CG5586-PE | 1356..1426 | 379..452 | 195 | 50 | Plus |
Tusp-PD | 1432 | CG5586-PD | 1356..1426 | 379..452 | 195 | 50 | Plus |
Translation from 646 to 2028
> RE38560.pep MSGINSRNQKMEQQRQLMEAYIRQKRASPGMVQASDLQINRPMSGMRSNS RELHAYDGPMQFISSPQNPDQILTNGSPGGINPVAMNTSRNHSNNMRSLS TINQEADLIEEISSHELEDEESSPVTVIEQHQQSASHSANSTQSQKPRAR QHSFSDNLDEDDYTNRNVAGAAPVRPAGMASSPYKDATLDGSSNGTGNGT GGESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLE RDYGKKIFLLGGRKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGT SFTVFDNGNKESTESPRLDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQ RVKISSADPKQQGILDLWKMKNMDNIVELHNKTPVWNDETQSYVLNFHGR VTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIAL SSFDGKIACE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11934-PA | 449 | GF11934-PA | 5..449 | 14..460 | 2331 | 96.4 | Plus |
Dana\GF16293-PA | 1419 | GF16293-PA | 1343..1418 | 379..457 | 206 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22088-PA | 448 | GG22088-PA | 3..448 | 15..460 | 2404 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20719-PA | 447 | GH20719-PA | 5..447 | 15..460 | 1950 | 85.8 | Plus |
Dgri\GH19263-PA | 1442 | GH19263-PA | 1366..1441 | 379..457 | 206 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ktub-PB | 460 | CG9398-PB | 1..460 | 1..460 | 2403 | 100 | Plus |
ktub-PC | 469 | CG9398-PC | 1..469 | 1..460 | 2383 | 98.1 | Plus |
Tusp-PG | 1430 | CG5586-PG | 1354..1424 | 379..452 | 195 | 50 | Plus |
Tusp-PE | 1432 | CG5586-PE | 1356..1426 | 379..452 | 195 | 50 | Plus |
Tusp-PD | 1432 | CG5586-PD | 1356..1426 | 379..452 | 195 | 50 | Plus |
Tusp-PF | 1433 | CG5586-PF | 1357..1427 | 379..452 | 195 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20804-PA | 453 | GI20804-PA | 5..453 | 14..460 | 1964 | 86.3 | Plus |
Dmoj\GI22014-PA | 1479 | GI22014-PA | 1403..1478 | 379..457 | 205 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10151-PA | 459 | GL10151-PA | 1..459 | 1..460 | 2262 | 91.8 | Plus |
Dper\GL13703-PA | 1446 | GL13703-PA | 1370..1445 | 379..457 | 205 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21760-PB | 456 | GA21760-PB | 10..456 | 13..460 | 2196 | 91.5 | Plus |
Dpse\GA18988-PA | 1470 | GA18988-PA | 1394..1469 | 379..457 | 205 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15805-PA | 443 | GM15805-PA | 1..443 | 18..460 | 2387 | 99.5 | Plus |
Dsec\GM16345-PA | 1401 | GM16345-PA | 1325..1400 | 379..457 | 205 | 46.8 | Plus |
Dsec\GM23252-PA | 77 | GM23252-PA | 1..71 | 379..452 | 204 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11564-PA | 443 | GD11564-PA | 1..443 | 18..460 | 2402 | 100 | Plus |
Dsim\GD21342-PA | 1157 | GD21342-PA | 1081..1156 | 379..457 | 207 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20537-PA | 455 | GJ20537-PA | 4..455 | 10..460 | 1949 | 84.9 | Plus |
Dvir\GJ10464-PA | 1458 | GJ10464-PA | 1382..1457 | 379..457 | 205 | 46.8 | Plus |