Clone RE38560 Report

Search the DGRC for RE38560

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:385
Well:60
Vector:pFlc-1
Associated Gene/Transcriptktub-RB
Protein status:RE38560.pep: gold
Sequenced Size:2510

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9398 2002-12-10 Blastp of sequenced clone
king-tubby 2008-04-29 Release 5.5 accounting
king-tubby 2008-08-15 Release 5.9 accounting
king-tubby 2008-12-18 5.12 accounting

Clone Sequence Records

RE38560.complete Sequence

2510 bp (2510 high quality bases) assembled on 2006-06-05

GenBank Submission: BT003201

> RE38560.complete
AGTTGTTGTTTTGGCAGCGTGCGGTTCGGTCGACGGGTTACATCGCCTTC
TCTCCTCTACCAAAATAAAGAGGCGCCAAATTCAATCAATTGGACAATAT
CACACGCAACTCAACGGGCACGAAAGTGTTTGTCAAACAACATAGATTGT
ATAACATTATAAATATATGCATATTCAGGCGGTACTCGCTCAGTGGCTAA
AGCAAACATTCAGTGCCAGCGATCCGGAGAATTCCGATCGATCGCGTCGG
TACAAAAAAAATTGAGCGAGAACAGGAAGAGCCGGCTGTTGGCTTCAGTC
TACAAATCCTCACCCTCGTGAACACCCCTTGATTTTTTTGTTGTCGCGTG
TGCTGCCGTACTACACTACCACAAACTACAAAATATATACCATACCATAC
AAACTGACGCCAGGTGTGCTAAATTCATAGATTCTTCTTCAATTATTTTG
GTGCCCCATCGGTTTTTGTTTTGCTGCATTCATTCGCATTCGAAAAGTCG
CTCTTCAACGCAAATCCCAAAACAGCTGTCACTCCCGAATATTTGCCAAA
TGCCTCTTCATCGGATCATCTGAATCGCGCGTAGTTAAGTGAAAATCGTC
AGAGGATTTTGATTGCCTTCTGAAATCTACAGCCATAACTGCAAAAATGT
CCGGAATCAACAGTCGTAATCAGAAAATGGAACAGCAGCGCCAGCTGATG
GAGGCCTACATCCGGCAGAAGAGAGCCTCGCCGGGAATGGTCCAGGCCAG
CGATTTGCAGATCAATCGACCCATGTCCGGGATGCGCAGCAACAGCCGGG
AGCTGCACGCCTACGACGGACCCATGCAGTTCATCAGTTCGCCCCAAAAT
CCGGACCAGATACTCACCAACGGCAGTCCCGGCGGCATCAATCCGGTTGC
CATGAACACGAGTCGCAATCACTCGAATAACATGCGCAGCCTAAGCACCA
TCAACCAGGAGGCTGATCTCATAGAGGAGATCTCATCGCACGAGTTGGAG
GACGAGGAGAGCAGTCCGGTGACGGTGATTGAGCAGCACCAGCAGTCAGC
CTCGCACAGCGCCAACTCGACGCAATCGCAGAAACCACGTGCCCGCCAGC
ATTCCTTTAGCGACAATCTGGACGAGGATGACTACACCAATCGCAATGTG
GCCGGTGCTGCTCCAGTGCGTCCCGCCGGCATGGCCTCATCGCCGTACAA
GGACGCAACGCTGGACGGCAGCAGCAACGGGACGGGGAACGGAACTGGCG
GCGAGTCCGAGGGAGATGTCATCGGCAATATCGACCAGTTCGTGATGCAA
CCAGCGCCACAGGGAGTGCTCTACAAGTGCCGCATTACGCGGGACAGGAA
GGGCATGGACCGCGGCCTCTTTCCCATCTACTACTTGCATCTGGAACGTG
ACTACGGCAAGAAGATATTTCTGCTGGGAGGTCGCAAACGCAAGAAGAGC
AAGACATCCAACTACATTGTCAGCTGCGATCCCACGGATTTGTCTCGCAA
TGCCGATGGCTTCTGTGGCAAACTGCGCTCTAATGTCTTTGGCACATCCT
TCACGGTCTTTGACAACGGCAACAAGGAGAGCACAGAGAGTCCTCGACTC
GACTTGGCCGTCATCATTTATGACACCAACATTTTGGGATTCAAGGGGCC
ACGCAACATGACTGTTATACTGCCCGGCATGACTGAGGACGATCAGCGTG
TCAAGATCAGTTCGGCGGATCCCAAACAGCAGGGCATCCTTGACCTATGG
AAAATGAAGAACATGGACAACATCGTGGAGCTGCACAATAAGACGCCAGT
GTGGAACGATGAAACCCAATCGTATGTGCTCAACTTTCATGGGCGCGTCA
CCCAGGCGTCGGTGAAGAACTTTCAGTTGGTCCACGACTCCGATCCGGAG
TACATAGTAATGCAGTTCGGCCGCACCTCGGAGGACGTCTTCACCATGGA
CTATCGCTATCCCCTGTGCGCCATGCAGGCATTCGCCATTGCCCTCAGTA
GTTTCGATGGCAAAATAGCCTGCGAGTGAGCTGGCTGGGATCCTCGGGTT
GGCCCGTTGCCTTATGTACAGCTGATTATCTGGAGTGCGGATCAAGTCGC
TCCGGGCGGATCATTGTTGAAATTATTATCGGAAATCTAGTCACTCGAAG
TCGGGTTTTGGTAGACCATCGTTGAAATGAGTAATGTAGTTAGTAGCTAC
TCGTATCGCGTATCATTGTATAACGTATATTCAGAATGTGCTCACCGATT
TTATAAGAAATTATTTAGGACAGGTCCTACAACTTTGTAAATCTAAATGT
GCCCCTTTTAGCGATAAGTTCACTTGTAAGCGATTCGAAGTCAAGGTCAT
TTAAAGTAATATCAGTTTTATAATCAGCATATAGCAACAAATCAAGGACT
AATGTAAACTATTTAAAATGCCACTACTATTAGTCGGTAAGAGAGCACTA
CTAACTTGTACTAAGCTCTAAATAAATACAAACAGCTATTGATCAAAAAA
AAAAAAAAAA

RE38560.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
king-tubby-RB 2568 king-tubby-RB 75..2568 1..2494 12470 100 Plus
king-tubby-RA 1870 king-tubby-RA 53..1865 688..2500 9065 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17009413..17010147 1758..2494 3530 98.9 Plus
chr2R 21145070 chr2R 16988397..16989084 1..688 3380 99.4 Plus
chr2R 21145070 chr2R 17008445..17008915 962..1432 2310 99.4 Plus
chr2R 21145070 chr2R 17008071..17008348 685..962 1375 99.6 Plus
chr2R 21145070 chr2R 17008969..17009162 1429..1622 910 97.9 Plus
chr2R 21145070 chr2R 17009219..17009356 1622..1759 675 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21122968..21123710 1758..2500 3715 100 Plus
2R 25286936 2R 21101930..21102617 1..688 3440 100 Plus
2R 25286936 2R 21122000..21122470 962..1432 2355 100 Plus
2R 25286936 2R 21121626..21121903 685..962 1390 100 Plus
2R 25286936 2R 21122524..21122717 1429..1622 970 100 Plus
2R 25286936 2R 21122774..21122911 1622..1759 690 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21124167..21124909 1758..2500 3715 100 Plus
2R 25260384 2R 21103129..21103816 1..688 3440 100 Plus
2R 25260384 2R 21123199..21123669 962..1432 2355 100 Plus
2R 25260384 2R 21122825..21123102 685..962 1390 100 Plus
2R 25260384 2R 21123723..21123916 1429..1622 970 100 Plus
2R 25260384 2R 21123973..21124110 1622..1759 690 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:37:03 has no hits.

RE38560.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:38:13 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16988397..16989084 1..688 99 -> Plus
chr2R 17008075..17008348 689..962 99 -> Plus
chr2R 17008446..17008913 963..1430 99 -> Plus
chr2R 17008971..17009161 1431..1621 97 -> Plus
chr2R 17009219..17009356 1622..1759 99 -> Plus
chr2R 17009415..17010147 1760..2494 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:59:20 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 1..1383 647..2029 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:23:48 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 1..1383 647..2029 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:03:02 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 1..1383 647..2029 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:42:38 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 1..1383 647..2029 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:35 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 1..1383 647..2029 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:20 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 1..2494 1..2494 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:23:48 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 1..2494 1..2494 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:03:02 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 3..2496 1..2494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:42:38 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 1..2494 1..2494 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:35 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 3..2496 1..2494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:13 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21101930..21102617 1..688 100 -> Plus
2R 21121630..21121903 689..962 100 -> Plus
2R 21122001..21122468 963..1430 100 -> Plus
2R 21122526..21122716 1431..1621 100 -> Plus
2R 21122774..21122911 1622..1759 100 -> Plus
2R 21122970..21123704 1760..2494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:13 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21101930..21102617 1..688 100 -> Plus
2R 21121630..21121903 689..962 100 -> Plus
2R 21122001..21122468 963..1430 100 -> Plus
2R 21122526..21122716 1431..1621 100 -> Plus
2R 21122774..21122911 1622..1759 100 -> Plus
2R 21122970..21123704 1760..2494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:38:13 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21101930..21102617 1..688 100 -> Plus
2R 21121630..21121903 689..962 100 -> Plus
2R 21122001..21122468 963..1430 100 -> Plus
2R 21122526..21122716 1431..1621 100 -> Plus
2R 21122774..21122911 1622..1759 100 -> Plus
2R 21122970..21123704 1760..2494 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:03:02 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16989435..16990122 1..688 100 -> Plus
arm_2R 17009135..17009408 689..962 100 -> Plus
arm_2R 17009506..17009973 963..1430 100 -> Plus
arm_2R 17010031..17010221 1431..1621 100 -> Plus
arm_2R 17010279..17010416 1622..1759 100 -> Plus
arm_2R 17010475..17011209 1760..2494 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:51:38 Download gff for RE38560.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21103129..21103816 1..688 100 -> Plus
2R 21122829..21123102 689..962 100 -> Plus
2R 21123200..21123667 963..1430 100 -> Plus
2R 21123725..21123915 1431..1621 100 -> Plus
2R 21123973..21124110 1622..1759 100 -> Plus
2R 21124169..21124903 1760..2494 100   Plus

RE38560.hyp Sequence

Translation from 646 to 2028

> RE38560.hyp
MSGINSRNQKMEQQRQLMEAYIRQKRASPGMVQASDLQINRPMSGMRSNS
RELHAYDGPMQFISSPQNPDQILTNGSPGGINPVAMNTSRNHSNNMRSLS
TINQEADLIEEISSHELEDEESSPVTVIEQHQQSASHSANSTQSQKPRAR
QHSFSDNLDEDDYTNRNVAGAAPVRPAGMASSPYKDATLDGSSNGTGNGT
GGESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLE
RDYGKKIFLLGGRKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGT
SFTVFDNGNKESTESPRLDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQ
RVKISSADPKQQGILDLWKMKNMDNIVELHNKTPVWNDETQSYVLNFHGR
VTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIAL
SSFDGKIACE*

RE38560.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-PB 460 CG9398-PB 1..460 1..460 2403 100 Plus
ktub-PC 469 CG9398-PC 1..469 1..460 2383 98.1 Plus
Tusp-PG 1430 CG5586-PG 1354..1424 379..452 195 50 Plus
Tusp-PE 1432 CG5586-PE 1356..1426 379..452 195 50 Plus
Tusp-PD 1432 CG5586-PD 1356..1426 379..452 195 50 Plus

RE38560.pep Sequence

Translation from 646 to 2028

> RE38560.pep
MSGINSRNQKMEQQRQLMEAYIRQKRASPGMVQASDLQINRPMSGMRSNS
RELHAYDGPMQFISSPQNPDQILTNGSPGGINPVAMNTSRNHSNNMRSLS
TINQEADLIEEISSHELEDEESSPVTVIEQHQQSASHSANSTQSQKPRAR
QHSFSDNLDEDDYTNRNVAGAAPVRPAGMASSPYKDATLDGSSNGTGNGT
GGESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLE
RDYGKKIFLLGGRKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGT
SFTVFDNGNKESTESPRLDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQ
RVKISSADPKQQGILDLWKMKNMDNIVELHNKTPVWNDETQSYVLNFHGR
VTQASVKNFQLVHDSDPEYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIAL
SSFDGKIACE*

RE38560.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11934-PA 449 GF11934-PA 5..449 14..460 2331 96.4 Plus
Dana\GF16293-PA 1419 GF16293-PA 1343..1418 379..457 206 46.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22088-PA 448 GG22088-PA 3..448 15..460 2404 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20719-PA 447 GH20719-PA 5..447 15..460 1950 85.8 Plus
Dgri\GH19263-PA 1442 GH19263-PA 1366..1441 379..457 206 46.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-PB 460 CG9398-PB 1..460 1..460 2403 100 Plus
ktub-PC 469 CG9398-PC 1..469 1..460 2383 98.1 Plus
Tusp-PG 1430 CG5586-PG 1354..1424 379..452 195 50 Plus
Tusp-PE 1432 CG5586-PE 1356..1426 379..452 195 50 Plus
Tusp-PD 1432 CG5586-PD 1356..1426 379..452 195 50 Plus
Tusp-PF 1433 CG5586-PF 1357..1427 379..452 195 50 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20804-PA 453 GI20804-PA 5..453 14..460 1964 86.3 Plus
Dmoj\GI22014-PA 1479 GI22014-PA 1403..1478 379..457 205 46.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10151-PA 459 GL10151-PA 1..459 1..460 2262 91.8 Plus
Dper\GL13703-PA 1446 GL13703-PA 1370..1445 379..457 205 46.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21760-PB 456 GA21760-PB 10..456 13..460 2196 91.5 Plus
Dpse\GA18988-PA 1470 GA18988-PA 1394..1469 379..457 205 46.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15805-PA 443 GM15805-PA 1..443 18..460 2387 99.5 Plus
Dsec\GM16345-PA 1401 GM16345-PA 1325..1400 379..457 205 46.8 Plus
Dsec\GM23252-PA 77 GM23252-PA 1..71 379..452 204 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11564-PA 443 GD11564-PA 1..443 18..460 2402 100 Plus
Dsim\GD21342-PA 1157 GD21342-PA 1081..1156 379..457 207 46.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20537-PA 455 GJ20537-PA 4..455 10..460 1949 84.9 Plus
Dvir\GJ10464-PA 1458 GJ10464-PA 1382..1457 379..457 205 46.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20975-PA 451 GK20975-PA 6..451 15..460 2097 88.3 Plus
Dwil\GK11759-PA 1483 GK11759-PA 1407..1482 379..457 204 46.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12168-PA 443 GE12168-PA 1..443 18..460 2384 99.1 Plus
Dyak\GE23747-PA 1362 GE23747-PA 1286..1361 379..457 205 46.8 Plus