BDGP Sequence Production Resources |
Search the DGRC for RE38619
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 386 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(3)03670-RA |
Protein status: | RE38619.pep: gold |
Preliminary Size: | 906 |
Sequenced Size: | 956 |
Gene | Date | Evidence |
---|---|---|
CG1715 | 2001-12-14 | Blastp of sequenced clone |
CG1715 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1715 | 2003-01-01 | Sim4 clustering to Release 3 |
l(3)03670 | 2008-04-29 | Release 5.5 accounting |
l(3)03670 | 2008-08-15 | Release 5.9 accounting |
l(3)03670 | 2008-12-18 | 5.12 accounting |
956 bp (956 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071348
> RE38619.complete TTTTCGTGCTTGCGCTTTAAGGTCACTCTGAGCACGTCTTATTTTTGTTG GGTTGGCCCTGTAGTTTTTCACCGAAAAGGGTTTTGCTCCACGAACAGCA GCTAGAGGAACTTCAAAGATGGGAGCCCGACAGTCTCAATCCCGCGAGCC CCGAACCGTTTCGATGGAAAACCCAACTCCTGCCGGCGTTATTGATATAT CCGACGATGTGGTCAAGCGACTGAAGGCGGGAATATCCCAGCAGGCTCGT GAGCACGCAGCCGCTGCGGAGGAATCGAAACCAGTGCCCAAGCCAACGAC GAAGGCTGCCGCCAAGCCAGCCGCATCCTCGCCAGCTGCTTCTCCTGCTC CGAAAGTATCCTCCTATCCCGCTGCAGTGCCCATTTACGTCCAGGGAGGA GGACACACCATTAGCGCGGCCGATGTGCAGCGCCAGATGAACCAGGAGCT AATCAAGAATGACGAGCTGTGGAAGGAGCGCATGGCGAAGCTGGAGGAGA ACCTCAAGAAGACCAACACCATCCTGGAGAAGGAGTACGCCAATGCTGTA GAAAATGTGCACAAGCGATTCGTCAGCACCGCGTCGTCGCACAAAGTGCC TCCCTGCCAGGACCTGAAATCCCAGCTGCTTGCCTGCTACCGCGCGCATC CCGGGGAGACCTTGAAGTGCATTGAGGAGGTGGCCCAATTCCGACAGTGC ATCGATCTTCATCGCGTCCAGAAGCTGGATGCGGAACCAGAGTCGTCGAA AGTGACCTCCAAGGCCACCGTTCCTGCCAAGGCGGCCTAGGATCCTGGCA AATCCTTTTGTCCTAATTTGTTGACTTTTCTTTGAGGCCCCTTATGGGTT TTGTATAAACGATTGAGCGATCGATGGGGATGTACTCAAAACTTAAGCAA AAGTGTCATTGCGAGCGATAGTAAACTAACTTAAATGAAACAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(3)03670-RA | 1045 | l(3)03670-RA | 41..983 | 1..943 | 4685 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 26875008..26875702 | 939..245 | 3355 | 98.8 | Minus |
chr3R | 27901430 | chr3R | 26875977..26876142 | 245..80 | 800 | 98.8 | Minus |
chr3R | 27901430 | chr3R | 26876226..26876307 | 82..1 | 410 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 31052610..31053308 | 943..245 | 3480 | 99.9 | Minus |
3R | 32079331 | 3R | 31053587..31053752 | 245..80 | 815 | 99.4 | Minus |
3R | 32079331 | 3R | 31053831..31053912 | 82..1 | 410 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 30793441..30794139 | 943..245 | 3480 | 99.8 | Minus |
3R | 31820162 | 3R | 30794418..30794583 | 245..80 | 815 | 99.3 | Minus |
3R | 31820162 | 3R | 30794662..30794743 | 82..1 | 410 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 26875006..26875701 | 246..941 | 98 | <- | Minus |
chr3R | 26875977..26876141 | 81..245 | 98 | <- | Minus |
chr3R | 26876228..26876307 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 1..672 | 119..790 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 1..672 | 119..790 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 1..672 | 119..790 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 1..672 | 119..790 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 1..672 | 119..790 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 1..941 | 1..941 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 1..941 | 1..941 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 4..940 | 1..937 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 1..941 | 1..941 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)03670-RA | 4..940 | 1..937 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31052612..31053307 | 246..941 | 99 | <- | Minus |
3R | 31053587..31053751 | 81..245 | 99 | <- | Minus |
3R | 31053833..31053912 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31052612..31053307 | 246..941 | 99 | <- | Minus |
3R | 31053587..31053751 | 81..245 | 99 | <- | Minus |
3R | 31053833..31053912 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31052612..31053307 | 246..941 | 99 | <- | Minus |
3R | 31053587..31053751 | 81..245 | 99 | <- | Minus |
3R | 31053833..31053912 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 26878334..26879029 | 246..941 | 99 | <- | Minus |
arm_3R | 26879309..26879473 | 81..245 | 99 | <- | Minus |
arm_3R | 26879555..26879634 | 1..80 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30793443..30794138 | 246..941 | 99 | <- | Minus |
3R | 30794418..30794582 | 81..245 | 99 | <- | Minus |
3R | 30794664..30794743 | 1..80 | 100 | Minus |
Translation from 118 to 789
> RE38619.pep MGARQSQSREPRTVSMENPTPAGVIDISDDVVKRLKAGISQQAREHAAAA EESKPVPKPTTKAAAKPAASSPAASPAPKVSSYPAAVPIYVQGGGHTISA ADVQRQMNQELIKNDELWKERMAKLEENLKKTNTILEKEYANAVENVHKR FVSTASSHKVPPCQDLKSQLLACYRAHPGETLKCIEEVAQFRQCIDLHRV QKLDAEPESSKVTSKATVPAKAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23295-PA | 228 | GF23295-PA | 1..205 | 1..204 | 859 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11893-PA | 215 | GG11893-PA | 1..215 | 1..216 | 942 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14349-PA | 228 | GH14349-PA | 1..210 | 1..210 | 761 | 71.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Chchd3-PA | 223 | CG1715-PA | 1..223 | 1..223 | 1132 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10443-PA | 222 | GI10443-PA | 1..199 | 1..204 | 831 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13968-PA | 209 | GL13968-PA | 1..195 | 1..204 | 779 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14351-PA | 209 | GA14351-PA | 1..202 | 1..211 | 789 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12111-PA | 223 | GM12111-PA | 1..223 | 1..223 | 1043 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16654-PA | 223 | GD16654-PA | 1..223 | 1..223 | 994 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10659-PA | 220 | GJ10659-PA | 1..215 | 1..219 | 858 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22560-PA | 226 | GK22560-PA | 1..220 | 1..218 | 802 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23341-PA | 222 | GE23341-PA | 1..222 | 1..223 | 958 | 92.8 | Plus |
Translation from 118 to 789
> RE38619.hyp MGARQSQSREPRTVSMENPTPAGVIDISDDVVKRLKAGISQQAREHAAAA EESKPVPKPTTKAAAKPAASSPAASPAPKVSSYPAAVPIYVQGGGHTISA ADVQRQMNQELIKNDELWKERMAKLEENLKKTNTILEKEYANAVENVHKR FVSTASSHKVPPCQDLKSQLLACYRAHPGETLKCIEEVAQFRQCIDLHRV QKLDAEPESSKVTSKATVPAKAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(3)03670-PA | 223 | CG1715-PA | 1..223 | 1..223 | 1132 | 100 | Plus |