Clone RE39020 Report

Search the DGRC for RE39020

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:390
Well:20
Vector:pFlc-1
Associated Gene/TranscriptRx-RA
Protein status:RE39020.pep: wuzgold
Preliminary Size:3266
Sequenced Size:3223

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10052 2002-01-01 Sim4 clustering to Release 2
CG10052 2002-05-30 Blastp of sequenced clone
CG10052 2003-01-01 Sim4 clustering to Release 3
Rx 2008-04-29 Release 5.5 accounting
Rx 2008-08-15 Release 5.9 accounting
Rx 2008-12-18 5.12 accounting

Clone Sequence Records

RE39020.complete Sequence

3223 bp (3223 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118390

> RE39020.complete
ATTGGCAACTCTGCCTTGGTCCGGTGCGCAACGGTTTCGGTAGTTGGTAG
TGCATAGTTGGTATTGTCGGAGTTAAACTTCTTCTCGCTTGTGACTGAAA
AATGCTTGACATTTAGCCAGAAAATTCTGAGCGCGATTCAAATACAATTT
GTATGACTGTGTAGAGTGTGTGTGGTGCCTCAACTGTGATCAATCATATC
ATTGCCGATTTAAGTACTCTTGCCCCTTGCAATCGAATGGATATCAAAGC
CTCGACGCCACCTGCCCTCGATGTGGCTCCTGGCAGCCAGGATCACCAGC
CGGAAAACCGGTAGCAATCTCCGGCGCCATGTCCGGTTCAGGTGGTGTGG
CCAACTCGTCCTCCACAGCGGCGGCCAACAATACCGCCGCCACATTCCAG
CACATCTTCGAGCAGCTGGTACAGCAGGGCGGCGGAAACCACAAGCTGCC
CCCCAAGCAGCTGGAGCAACTGCGTCACCTGCTCGGCAACGTGAGGGACG
CCAAGAATCTGCAGATGATCGTGGAGAAGTTCAAGAATCTGGAGCAGTTC
CACGAGCACTACGCCGCCCACCTGGCTAACAACAACACTGTGATCTCAAC
GGAAGATAGCAACGACTTGGTTAAGGATAATGCCAGGAAGTATGGATCTG
GTGGACAAACGCTAACGCCCCGCCACACAATCGATGCCATTCTGGGCCTA
AAGAATCGCAATGGCGCGGCGAATGGCAGTGGCAGGAATCCGGAAACGGT
CAGCGATGGCTCCGTTGATCCCTCCCTGGGTGACGATGATGCCACTGATC
TACGCTGCGGCATGACCCTGACGCAGTTGCGCAGCATGGACAATCACATG
GCCAGTATGCTGCAGCAGCACGCGAAAAACGGCGGAGCCCTGCCCTACGG
TCCACCAACTCCGCCGGGGGGTCAGCAGCCCCAGGTGCCGAATGCCACGC
CCCTGCACCATGGACAACAGATGGGCGGCCAGGCGGGACATGCAACACAT
GCCGGACATGGTCATCCTACGCATCATGGGCATGCGCCCTTCGGCTATCA
TAATGCATTTGGCTTTGGCCAGGGCGGTCATGGGTATGGGCATCCGGAGG
AGGCGGCGGGCAATTACCTCAATTCGATGCACCAGATGGTCGAGGCCAAT
CAATTGCAGACCGGAGCCAATGGGGCCAATCCACCGCCCGCTCCGCTGCC
GCCCAGTTCCTTTGGCAGTCATCAGCAGCATTTGGCCGCCTTGGCGGCTC
AGGCGCAGGAGCAGCAGAATCAACACAGCAAATACGCCAAGTCATCGCCC
ACTGGAGCGGGTCCTCCTCCACCGCCGGGTGCCTACTTTATGGAATCCCA
GACGGCGCCTGTCGCCCCGTCGCAAATCAACTACGACGAGCGTTCAATGT
CCTCGGCCAGCGATTTGGAGGAGGATGACGATGATGCGGCAAAGTTGCAG
CTCGATGTGACCTCGCCGCCCACTCCGTCGCCACGTGGTCAGCTGGCCGC
CAAGCGCAAGTCCGCCGGCGTCTTCTGTGATGATAATGAGCCAAAATTAG
CCAACGGTCAGTTGCCAGGCGGCAATTACGGCATTCGTCCGCGCAGCATG
GAGGAGGTGCATCATCAGCAGCAATCGCATCACCATCAACAACAACAGCA
GCAGCAGCAACAGCAACAGCAACTGCAACAGCAGCAGGGCTTTCAGCACG
ACTTTCGCAACAGTGGCAATGGGAATCCCAATGGCAACAGCAATTCCGGC
GATCATGGCGAGCGTTTGAACGCGGATAGCGACAGCTTGGTCAACGGCAG
CTGTGCCTCCAGCGAGGATCTCAACCAGACCAACAGCAGCGAGCAGGGCG
AGAAGATCACCTCCGGCAGCGACGACGAAGGTCAAGATGACAACTGCGCC
AAGAAGAAACACCGTCGCAATCGGACCACCTTCACCACCTACCAGCTCCA
TGAGCTGGAGCGGGCCTTCGAGAAGTCCCACTACCCCGATGTCTATTCCC
GCGAGGAGCTGGCCATGAAGGTGAACCTGCCCGAGGTCCGCGTCCAGGTG
TGGTTCCAGAATCGCCGCGCCAAGTGGCGTCGCCAGGAGAAATCGGAGAG
TCTTCGCCTGGGCCTGACCCACTTCACCCAGCTGCCACATCGCCTGGGAT
GCGGTGCATCCGGACTGCCCGTGGATCCCTGGCTATCACCACCACTGCTC
AGCGCATTGCCAGGCTTTCTCTCGCATCCGCAGACTGTGTACCCAAGCTA
TCTGACGCCGCCGCTCAGCCTGGCGCCCGGAAATCTGACCATGAGCAGTC
TGGCGGCCATGGGCCACCACCATGCCCACAATGGGCCGCCGCCCCCGCAC
GTGGGTCACGGGGGACATGGTCAGCCGCAGCCACCGCCACCGCCGCCGCC
CCACGGAGTGCCCCACCCACATGGCAGCCACCATGTGGTACCCCTTTCTC
ACCTCTCGCCGCACCTGTCACGCATGTCGCCGCATGCGACGTCCTTGGGC
TCGCCCCACCACGGAGTGACCCCCCTCGGCACGCCGCTGCACAGCAGTCT
GCCGCCCAGTTCGACAGCCACCACCGTGGCCGTCTCATCCTCGCAGTCGT
CCTCCTCCTCCGCCTCGCTGGAGTGCAGCGGTCCGGATGTCTGCATGTCG
CCGCAGAACCTGAGCATTGGCAATGCCGATTCCAATGGCGATGGACGCGA
CCTGAGCAGCGACCTGGATGCCGGCAGCACCAGCAGCAATCCCGGCAGTA
GTCTGGACAAGTGCGCGGCCAGCGCCAACATAGAGCTGCTCGATGTGGGC
CGGGATAGCCCACCACCTCCGCCCACTCCGACTGGCAAGGGTTCGAGCAC
ACCGCCGACGGACATGCGAAGCAACTCGATCGCCACGCTGAGGATCAAGG
CCAAGGAGCACCTGGACAACCTGAACAAGGGAATGGTATCCATTGTCTAG
CGCCAGTCGGTTCCTAGCTAAGTGCACCTCCAATTGAAAACAGTTCCCAG
TCCCTTGTATCGCGTCATTTAGGTGTGTTCTAAGTTTAGTGAATTTCGTG
TTGTAAGTACATATTTCTGAGGCAGTTTCTTAGATGGTAAACTCAACGTG
TGCAAAGTGTATTTGTAAAATTTTAATTACTTCAATGAAAAACGGCTGAC
GAAGAAGTCTATTCCTAATGCATATTAGTACAAAATAAATATGACAAGTT
TTAGCTCAAAAAAAAAAAAAAAA

RE39020.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rx-RA 3259 Rx-RA 51..3259 1..3209 16015 99.9 Plus
CG11294-RA 1498 CG11294-RA 432..602 1909..2079 285 77.7 Plus
CG34340.a 2664 CG34340.a 760..933 1906..2079 270 77 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16808896..16810020 758..1882 5610 99.9 Plus
chr2R 21145070 chr2R 16822480..16823476 2211..3207 4895 99.4 Plus
chr2R 21145070 chr2R 16803256..16803861 1..605 2935 99.3 Plus
chr2R 21145070 chr2R 16810194..16810365 1879..2050 860 100 Plus
chr2R 21145070 chr2R 16822124..16822295 2043..2214 845 99.4 Plus
chr2R 21145070 chr2R 16804883..16805038 604..759 780 100 Plus
chr3R 27901430 chr3R 14062130..14062284 1925..2079 235 76.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20922458..20923582 758..1882 5625 100 Plus
2R 25286936 2R 20936034..20937032 2211..3209 4980 99.9 Plus
2R 25286936 2R 20916813..20917417 1..605 3010 99.8 Plus
2R 25286936 2R 20923753..20923924 1879..2050 860 100 Plus
2R 25286936 2R 20935678..20935849 2043..2214 860 100 Plus
2R 25286936 2R 20918455..20918610 604..759 780 100 Plus
3R 32079331 3R 18237836..18237990 1925..2079 235 76.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20923657..20924781 758..1882 5625 100 Plus
2R 25260384 2R 20937233..20938231 2211..3209 4980 99.8 Plus
2R 25260384 2R 20918012..20918616 1..605 3010 99.8 Plus
2R 25260384 2R 20936877..20937048 2043..2214 860 100 Plus
2R 25260384 2R 20924952..20925123 1879..2050 860 100 Plus
2R 25260384 2R 20919654..20919809 604..759 780 100 Plus
3R 31820162 3R 17978740..17978821 1998..2079 215 84.1 Plus
3L 28103327 3L 7757923..7758000 1686..1609 195 83.3 Minus
X 23527363 X 8700813..8700847 2079..2045 160 97.1 Minus
X 23527363 X 8701352..8701493 2050..1909 155 73.9 Minus
Blast to na_te.dros performed 2019-03-16 12:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 279..389 3094..3200 121 61.6 Plus

RE39020.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:19:17 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16803256..16803861 1..605 99 -> Plus
chr2R 16804885..16805037 606..758 100 -> Plus
chr2R 16808897..16809753 759..1615 100 == Plus
chr2R 16809826..16810018 1688..1880 99 -> Plus
chr2R 16810196..16810362 1881..2047 100 -> Plus
chr2R 16822129..16822294 2048..2213 99 -> Plus
chr2R 16822483..16823476 2214..3207 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:10:18 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RA 1..2622 329..2950 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:35:21 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RA 1..2622 329..2950 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:09:52 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RB 1..2714 237..2950 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:26:56 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RA 1..2622 329..2950 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:52 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RB 1..2714 237..2950 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:10:18 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RA 34..3240 1..3207 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:35:20 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RA 34..3240 1..3207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:09:52 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RB 61..3267 1..3207 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:26:56 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RA 34..3240 1..3207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:52 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
Rx-RB 61..3267 1..3207 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:19:17 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20918457..20918609 606..758 100 -> Plus
2R 20916813..20917417 1..605 99 -> Plus
2R 20922459..20923580 759..1880 100 -> Plus
2R 20923755..20923921 1881..2047 100 -> Plus
2R 20935683..20935848 2048..2213 100 -> Plus
2R 20936037..20937030 2214..3207 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:19:17 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20918457..20918609 606..758 100 -> Plus
2R 20916813..20917417 1..605 99 -> Plus
2R 20922459..20923580 759..1880 100 -> Plus
2R 20923755..20923921 1881..2047 100 -> Plus
2R 20935683..20935848 2048..2213 100 -> Plus
2R 20936037..20937030 2214..3207 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:19:17 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20918457..20918609 606..758 100 -> Plus
2R 20916813..20917417 1..605 99 -> Plus
2R 20922459..20923580 759..1880 100 -> Plus
2R 20923755..20923921 1881..2047 100 -> Plus
2R 20935683..20935848 2048..2213 100 -> Plus
2R 20936037..20937030 2214..3207 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:09:52 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16823188..16823353 2048..2213 100 -> Plus
arm_2R 16804318..16804922 1..605 99 -> Plus
arm_2R 16805962..16806114 606..758 100 -> Plus
arm_2R 16809964..16811085 759..1880 100 -> Plus
arm_2R 16811260..16811426 1881..2047 100 -> Plus
arm_2R 16823542..16824535 2214..3207 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:59:25 Download gff for RE39020.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20918012..20918616 1..605 99 -> Plus
2R 20919656..20919808 606..758 100 -> Plus
2R 20923658..20924779 759..1880 100 -> Plus
2R 20924954..20925120 1881..2047 100 -> Plus
2R 20936882..20937047 2048..2213 100 -> Plus
2R 20937236..20938229 2214..3207 99   Plus

RE39020.pep Sequence

Translation from 328 to 2949

> RE39020.pep
MSGSGGVANSSSTAAANNTAATFQHIFEQLVQQGGGNHKLPPKQLEQLRH
LLGNVRDAKNLQMIVEKFKNLEQFHEHYAAHLANNNTVISTEDSNDLVKD
NARKYGSGGQTLTPRHTIDAILGLKNRNGAANGSGRNPETVSDGSVDPSL
GDDDATDLRCGMTLTQLRSMDNHMASMLQQHAKNGGALPYGPPTPPGGQQ
PQVPNATPLHHGQQMGGQAGHATHAGHGHPTHHGHAPFGYHNAFGFGQGG
HGYGHPEEAAGNYLNSMHQMVEANQLQTGANGANPPPAPLPPSSFGSHQQ
HLAALAAQAQEQQNQHSKYAKSSPTGAGPPPPPGAYFMESQTAPVAPSQI
NYDERSMSSASDLEEDDDDAAKLQLDVTSPPTPSPRGQLAAKRKSAGVFC
DDNEPKLANGQLPGGNYGIRPRSMEEVHHQQQSHHHQQQQQQQQQQQQLQ
QQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQ
TNSSEQGEKITSGSDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKS
HYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLTHFT
QLPHRLGCGASGLPVDPWLSPPLLSALPGFLSHPQTVYPSYLTPPLSLAP
GNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVPHPHGS
HHVVPLSHLSPHLSRMSPHATSLGSPHHGVTPLGTPLHSSLPPSSTATTV
AVSSSQSSSSSASLECSGPDVCMSPQNLSIGNADSNGDGRDLSSDLDAGS
TSSNPGSSLDKCAASANIELLDVGRDSPPPPPTPTGKGSSTPPTDMRSNS
IATLRIKAKEHLDNLNKGMVSIV*

RE39020.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12207-PA 925 GF12207-PA 18..925 1..873 2839 76.5 Plus
Dana\GF20646-PA 405 GF20646-PA 64..142 510..588 308 63.3 Plus
Dana\GF12736-PA 410 GF12736-PA 117..204 498..588 291 57.1 Plus
Dana\GF15246-PA 589 GF15246-PA 44..112 520..588 290 66.7 Plus
Dana\GF15026-PA 325 GF15026-PA 2..65 525..588 285 71.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22067-PA 898 GG22067-PA 32..898 1..873 4317 95.4 Plus
Dere\GG24714-PA 416 GG24714-PA 73..151 510..588 307 62 Plus
Dere\GG24732-PA 352 GG24732-PA 2..65 525..588 289 71.9 Plus
Dere\GG20821-PA 416 GG20821-PA 133..220 498..588 286 57.1 Plus
Dere\GG16399-PA 900 GG16399-PA 457..537 513..593 270 54.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22006-PA 879 GH22006-PA 33..879 22..873 2323 62.9 Plus
Dgri\GH11220-PA 376 GH11220-PA 52..130 510..588 306 63.3 Plus
Dgri\GH19875-PA 395 GH19875-PA 123..210 498..588 288 57.1 Plus
Dgri\GH11036-PA 372 GH11036-PA 2..65 525..588 287 71.9 Plus
Dgri\GH11236-PA 372 GH11236-PA 2..65 525..588 286 71.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rx-PB 904 CG10052-PB 32..904 1..873 4702 100 Plus
al-PA 408 CG3935-PA 67..390 510..861 375 33.5 Plus
hbn-PA 409 CG33152-PA 87..365 429..705 332 34.7 Plus
ey-PB 624 CG1464-PB 164..549 499..860 300 29.5 Plus
ey-PA 838 CG1464-PA 378..763 499..860 300 29.5 Plus
ey-PC 857 CG1464-PC 397..782 499..860 300 29.5 Plus
ey-PD 898 CG1464-PD 438..823 499..860 300 29.5 Plus
repo-PA 612 CG31240-PA 113..405 419..648 294 32.5 Plus
Drgx-PF 587 CG34340-PF 44..444 520..861 284 28.9 Plus
Drgx-PE 587 CG34340-PE 44..444 520..861 284 28.9 Plus
prd-PA 590 CG6716-PA 129..463 463..802 279 31 Plus
prd-PB 613 CG6716-PB 152..486 463..802 279 31 Plus
otp-PK 416 CG10036-PK 48..413 462..786 276 28.3 Plus
otp-PJ 374 CG10036-PJ 48..180 462..592 271 41.2 Plus
Pph13-PA 357 CG2819-PA 2..340 520..861 265 29 Plus
otp-PE 409 CG10036-PE 48..406 462..786 260 27.4 Plus
toy-PA 543 CG11186-PA 215..330 482..593 260 44.8 Plus
OdsH-PA 382 CG6352-PA 52..220 401..590 259 34.6 Plus
otp-PI 367 CG10036-PI 48..173 462..592 255 38.9 Plus
B-H2-PA 645 CG5488-PA 244..587 428..761 250 25.6 Plus
eyg-PC 670 CG10488-PC 307..498 493..674 250 37.3 Plus
eyg-PB 670 CG10488-PB 307..498 493..674 250 37.3 Plus
eyg-PA 670 CG10488-PA 307..498 493..674 250 37.3 Plus
otp-PF 313 CG10036-PF 4..310 519..786 249 29.5 Plus
Vsx2-PA 640 CG33980-PA 220..290 518..588 247 62 Plus
Vsx2-PB 645 CG33980-PB 220..290 518..588 247 62 Plus
toe-PA 640 CG10704-PA 293..444 451..588 246 40.3 Plus
Hmx-PD 718 CG43748-PD 370..627 430..692 246 28.7 Plus
CG11294-PB 261 CG11294-PB 21..146 525..670 244 43 Plus
CG11294-PA 261 CG11294-PA 21..146 525..670 244 43 Plus
otp-PC 271 CG10036-PC 4..77 519..592 244 56.8 Plus
gsb-n-PA 449 CG2692-PA 139..312 487..674 239 34.7 Plus
CG32532-PD 688 CG32532-PD 150..570 224..588 236 25.4 Plus
CG9876-PA 275 CG9876-PA 17..191 415..602 235 33.9 Plus
PHDP-PA 220 CG11182-PA 22..172 458..588 233 41.4 Plus
Ptx1-PA 509 CG1447-PA 138..325 423..589 232 33 Plus
toy-PC 526 CG11186-PC 215..326 482..593 232 43.1 Plus
Ptx1-PE 610 CG1447-PE 138..325 423..589 232 33 Plus
otp-PH 306 CG10036-PH 3..303 525..786 231 28.8 Plus
CG32532-PB 354 CG32532-PB 174..240 522..588 231 65.7 Plus
CG32532-PC 358 CG32532-PC 174..240 522..588 231 65.7 Plus
unc-4-PC 588 CG6269-PC 212..305 496..590 231 48.4 Plus
unc-4-PB 588 CG6269-PB 212..305 496..590 231 48.4 Plus
Ptx1-PC 514 CG1447-PC 210..330 464..589 230 38.9 Plus
Gsc-PC 415 CG2851-PC 280..348 526..594 229 60.9 Plus
Gsc-PD 473 CG2851-PD 338..406 526..594 229 60.9 Plus
otp-PG 264 CG10036-PG 3..70 525..592 226 55.9 Plus
Vsx1-PB 837 CG4136-PB 392..640 525..763 222 31.1 Plus
Vsx1-PA 837 CG4136-PA 392..640 525..763 222 31.1 Plus
CG34367-PB 297 CG34367-PB 61..203 520..668 218 38.2 Plus
CG34367-PC 420 CG34367-PC 184..326 520..668 218 38.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19710-PA 884 GI19710-PA 36..884 22..873 2194 64.4 Plus
Dmoj\GI21624-PA 397 GI21624-PA 54..132 510..588 303 62 Plus
Dmoj\GI21809-PA 392 GI21809-PA 2..65 525..588 289 71.9 Plus
Dmoj\GI23866-PA 623 GI23866-PA 61..129 520..588 289 66.7 Plus
Dmoj\GI19825-PA 411 GI19825-PA 146..224 512..588 287 64.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17060-PA 920 GL17060-PA 56..700 23..668 1958 71.8 Plus
Dper\GL18872-PA 397 GL18872-PA 65..143 510..588 303 62 Plus
Dper\GL17416-PA 401 GL17416-PA 115..202 498..588 290 57.1 Plus
Dper\GL18888-PA 376 GL18888-PA 2..65 525..588 289 71.9 Plus
Dper\GL18665-PA 370 GL18665-PA 44..112 520..588 282 66.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10035-PA 921 GA10035-PA 56..701 23..668 1984 71.9 Plus
Dpse\GA17785-PA 395 GA17785-PA 65..143 510..588 303 62 Plus
Dpse\GA17327-PA 404 GA17327-PA 118..205 498..588 290 57.1 Plus
Dpse\GA15474-PA 376 GA15474-PA 2..65 525..588 289 71.9 Plus
Dpse\ey-PA 896 GA13138-PA 454..534 513..593 271 54.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15784-PA 895 GM15784-PA 32..895 1..873 4445 97.5 Plus
Dsec\GM16736-PA 410 GM16736-PA 67..145 510..588 308 62 Plus
Dsec\GM16755-PA 348 GM16755-PA 2..65 525..588 289 71.9 Plus
Dsec\GM15768-PA 407 GM15768-PA 124..211 498..588 287 57.1 Plus
Dsec\GM13021-PA 543 GM13021-PA 215..330 482..593 267 44.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11547-PA 903 GD11547-PA 32..903 1..873 3167 89.5 Plus
Dsim\GD23020-PA 410 GD23020-PA 67..145 510..588 308 62 Plus
Dsim\GD23036-PA 355 GD23036-PA 2..70 520..588 293 68.1 Plus
Dsim\GD25243-PA 411 GD25243-PA 128..215 498..588 287 57.1 Plus
Dsim\GD25001-PA 220 GD25001-PA 109..172 525..588 250 65.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17468-PA 881 GJ17468-PA 34..881 22..873 2245 66 Plus
Dvir\GJ17771-PA 381 GJ17771-PA 54..132 510..588 302 62 Plus
Dvir\GJ17788-PA 378 GJ17788-PA 2..65 525..588 288 71.9 Plus
Dvir\GJ18584-PA 405 GJ18584-PA 128..215 498..588 288 57.1 Plus
Dvir\ey-PA 906 GJ15657-PA 481..561 513..593 270 54.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23335-PA 937 GK23335-PA 53..937 23..873 2168 64 Plus
Dwil\GK23788-PA 375 GK23788-PA 51..129 510..588 307 62 Plus
Dwil\GK22873-PA 395 GK22873-PA 107..201 501..588 294 56.8 Plus
Dwil\GK24418-PA 364 GK24418-PA 2..65 525..588 286 71.9 Plus
Dwil\GK13683-PA 552 GK13683-PA 249..330 512..593 267 54.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12148-PA 906 GE12148-PA 32..906 1..873 3352 94.7 Plus
Dyak\GE16769-PA 410 GE16769-PA 67..145 510..588 309 62 Plus
Dyak\GE16946-PA 353 GE16946-PA 2..65 525..588 287 71.9 Plus
Dyak\GE14559-PA 898 GE14559-PA 455..535 513..593 271 54.3 Plus
Dyak\GE14563-PA 543 GE14563-PA 249..330 512..593 261 53.7 Plus

RE39020.hyp Sequence

Translation from 328 to 2949

> RE39020.hyp
MSGSGGVANSSSTAAANNTAATFQHIFEQLVQQGGGNHKLPPKQLEQLRH
LLGNVRDAKNLQMIVEKFKNLEQFHEHYAAHLANNNTVISTEDSNDLVKD
NARKYGSGGQTLTPRHTIDAILGLKNRNGAANGSGRNPETVSDGSVDPSL
GDDDATDLRCGMTLTQLRSMDNHMASMLQQHAKNGGALPYGPPTPPGGQQ
PQVPNATPLHHGQQMGGQAGHATHAGHGHPTHHGHAPFGYHNAFGFGQGG
HGYGHPEEAAGNYLNSMHQMVEANQLQTGANGANPPPAPLPPSSFGSHQQ
HLAALAAQAQEQQNQHSKYAKSSPTGAGPPPPPGAYFMESQTAPVAPSQI
NYDERSMSSASDLEEDDDDAAKLQLDVTSPPTPSPRGQLAAKRKSAGVFC
DDNEPKLANGQLPGGNYGIRPRSMEEVHHQQQSHHHQQQQQQQQQQQQLQ
QQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQ
TNSSEQGEKITSGSDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKS
HYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLTHFT
QLPHRLGCGASGLPVDPWLSPPLLSALPGFLSHPQTVYPSYLTPPLSLAP
GNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVPHPHGS
HHVVPLSHLSPHLSRMSPHATSLGSPHHGVTPLGTPLHSSLPPSSTATTV
AVSSSQSSSSSASLECSGPDVCMSPQNLSIGNADSNGDGRDLSSDLDAGS
TSSNPGSSLDKCAASANIELLDVGRDSPPPPPTPTGKGSSTPPTDMRSNS
IATLRIKAKEHLDNLNKGMVSIV*

RE39020.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rx-PB 904 CG10052-PB 32..904 1..873 4702 100 Plus
al-PA 408 CG3935-PA 67..390 510..861 375 33.5 Plus
hbn-PA 409 CG33152-PA 87..365 429..705 332 34.7 Plus
ey-PB 624 CG1464-PB 164..549 499..860 300 29.5 Plus
ey-PA 838 CG1464-PA 378..763 499..860 300 29.5 Plus