BDGP Sequence Production Resources |
Search the DGRC for RE39031
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 390 |
Well: | 31 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5023-RA |
Protein status: | RE39031.pep: gold |
Preliminary Size: | 707 |
Sequenced Size: | 794 |
Gene | Date | Evidence |
---|---|---|
CG5023 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5023 | 2002-02-22 | Blastp of sequenced clone |
CG5023 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5023 | 2008-04-29 | Release 5.5 accounting |
CG5023 | 2008-08-15 | Release 5.9 accounting |
CG5023 | 2008-12-18 | 5.12 accounting |
794 bp (794 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084164
> RE39031.complete AGTTGAAATTTGTGTCTCAAACGCGCCACACGCTAATTTGCATTTGCATT TCACTTTCAAATCTAATAATTCACAATGGCTCCACGCAACAAGGAACAGG AACAGGAAGTGCTCAACTGGGTGTTCGCCGTGATTGGCGAGAAGGTCCCC AGCGGGCAGTACGAGGACATTCTCAAGGACGGCATCTGGCTGTGCAAGCT GGCCAACAAACTGGCCCCCGGATCGGTGAAGAAGATCCAGGAGCGCGGCA CCAACTTCCAACTGATGGAGAACATCCAGCGTTTCCAGGCAGCGGTCAAG AAGTACGGTGTGCCCGAGGAGGAGATCTTCCAAACCGCCGATCTTTTCGA GCGTCGCAACATCCCCCAGGTCACCCTCTCCCTGTACGCCCTTGGACGCA TCACGCAAAAGCACCCCGAGTACACTGGCCCCACACTGGGACCCAAGATG GCCGACAAGAACGAGCGCAGCTTCACCGAAGAGCAGCTCCGTGCCCACGA GGGTGAGCTCAACCTGCAGATGGGCTTCAACAAGGGCGCCTCGCAGGCTG GACACGGTGGTATGGGCAACACCCGCCACATGTAAGGCACCACCATCCCA ACCGATCCCGGAAAGAAAAACACCACAACACACTCAACCACACAAACACC GAAATCTAATTAGTTCAAACAAAAAGTGGGTTTTGTATCTCGTGCGTCAT GGCGCATGATTTAAGCAGTGCCAAGCTCTAAATGTAATTTATATAATATG AAACAAATAAATTAATTAATTTTAATATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5023-RA | 833 | CG5023-RA | 47..827 | 1..781 | 3890 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 15998484..15998859 | 403..778 | 1865 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 15998080..15998400 | 82..402 | 1605 | 100 | Plus |
chr3R | 27901430 | chr3R | 15993431..15993511 | 1..81 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 20174491..20174869 | 403..781 | 1880 | 99.7 | Plus |
3R | 32079331 | 3R | 20174091..20174411 | 82..402 | 1605 | 100 | Plus |
3R | 32079331 | 3R | 20169440..20169520 | 1..81 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 19915322..19915700 | 403..781 | 1880 | 99.7 | Plus |
3R | 31820162 | 3R | 19914922..19915242 | 82..402 | 1605 | 100 | Plus |
3R | 31820162 | 3R | 19910271..19910351 | 1..81 | 405 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 5792..5842 | 721..775 | 121 | 74.5 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1415..1460 | 778..733 | 113 | 71.7 | Minus |
TART-A | 13424 | TART-A 13424bp | 2669..2744 | 572..648 | 112 | 62.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 15998080..15998400 | 82..402 | 100 | -> | Plus |
chr3R | 15993431..15993511 | 1..81 | 100 | -> | Plus |
chr3R | 15998484..15998815 | 403..734 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5023-RA | 1..510 | 76..585 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5023-RA | 1..510 | 76..585 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5023-RA | 1..510 | 76..585 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5023-RA | 1..510 | 76..585 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5023-RA | 5..782 | 1..778 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5023-RA | 5..782 | 1..778 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5023-RA | 6..783 | 1..778 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5023-RA | 5..782 | 1..778 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5023-RA | 6..783 | 1..778 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20169440..20169520 | 1..81 | 100 | -> | Plus |
3R | 20174091..20174411 | 82..402 | 100 | -> | Plus |
3R | 20174491..20174866 | 403..778 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20169440..20169520 | 1..81 | 100 | -> | Plus |
3R | 20174091..20174411 | 82..402 | 100 | -> | Plus |
3R | 20174491..20174866 | 403..778 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20169440..20169520 | 1..81 | 100 | -> | Plus |
3R | 20174091..20174411 | 82..402 | 100 | -> | Plus |
3R | 20174491..20174866 | 403..778 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 15995162..15995242 | 1..81 | 100 | -> | Plus |
arm_3R | 15999813..16000133 | 82..402 | 100 | -> | Plus |
arm_3R | 16000213..16000588 | 403..778 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19914922..19915242 | 82..402 | 100 | -> | Plus |
3R | 19915322..19915697 | 403..778 | 99 | Plus | |
3R | 19910271..19910351 | 1..81 | 100 | -> | Plus |
Translation from 75 to 584
> RE39031.pep MAPRNKEQEQEVLNWVFAVIGEKVPSGQYEDILKDGIWLCKLANKLAPGS VKKIQERGTNFQLMENIQRFQAAVKKYGVPEEEIFQTADLFERRNIPQVT LSLYALGRITQKHPEYTGPTLGPKMADKNERSFTEEQLRAHEGELNLQMG FNKGASQAGHGGMGNTRHM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17639-PA | 169 | GF17639-PA | 1..169 | 1..169 | 879 | 95.9 | Plus |
Dana\GF13684-PA | 184 | GF13684-PA | 15..172 | 4..160 | 436 | 51.3 | Plus |
Dana\GF23888-PA | 188 | GF23888-PA | 24..188 | 5..169 | 397 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23757-PA | 169 | GG23757-PA | 1..169 | 1..169 | 903 | 100 | Plus |
Dere\GG20371-PA | 184 | GG20371-PA | 15..172 | 4..160 | 450 | 53.2 | Plus |
Dere\GG14221-PA | 188 | GG14221-PA | 24..188 | 5..169 | 396 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23202-PA | 243 | GH23202-PA | 77..243 | 3..169 | 875 | 95.2 | Plus |
Dgri\GH21621-PA | 184 | GH21621-PA | 15..172 | 4..160 | 451 | 53.8 | Plus |
Dgri\GH15556-PA | 188 | GH15556-PA | 24..188 | 5..169 | 388 | 46.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5023-PA | 169 | CG5023-PA | 1..169 | 1..169 | 887 | 100 | Plus |
Mp20-PA | 184 | CG4696-PA | 15..171 | 4..159 | 441 | 53.5 | Plus |
Mp20-PC | 189 | CG4696-PC | 15..171 | 4..159 | 441 | 53.5 | Plus |
Chd64-PC | 175 | CG14996-PC | 11..175 | 5..169 | 379 | 47.9 | Plus |
Chd64-PB | 188 | CG14996-PB | 24..188 | 5..169 | 379 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22717-PA | 169 | GI22717-PA | 1..169 | 1..169 | 868 | 94.7 | Plus |
Dmoj\GI20073-PA | 184 | GI20073-PA | 15..172 | 4..160 | 436 | 52.5 | Plus |
Dmoj\GI16831-PA | 188 | GI16831-PA | 24..188 | 5..169 | 401 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12090-PA | 266 | GL12090-PA | 1..156 | 1..156 | 820 | 97.4 | Plus |
Dper\GL11002-PA | 184 | GL11002-PA | 15..172 | 4..160 | 448 | 53.2 | Plus |
Dper\GL12739-PA | 188 | GL12739-PA | 24..188 | 5..169 | 390 | 46.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18602-PA | 169 | GA18602-PA | 1..169 | 1..169 | 875 | 95.9 | Plus |
Dpse\GA18362-PA | 184 | GA18362-PA | 15..172 | 4..160 | 448 | 53.2 | Plus |
Dpse\GA13413-PA | 188 | GA13413-PA | 24..188 | 5..169 | 390 | 46.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23099-PA | 182 | GM23099-PA | 16..182 | 3..169 | 894 | 100 | Plus |
Dsec\GM14014-PA | 188 | GM14014-PA | 24..188 | 5..169 | 396 | 47.9 | Plus |
Dsec\GM21458-PA | 216 | GM21458-PA | 15..192 | 4..169 | 359 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19339-PA | 106 | GD19339-PA | 1..106 | 64..169 | 565 | 100 | Plus |
Dsim\GD10956-PA | 184 | GD10956-PA | 15..172 | 4..160 | 446 | 52.5 | Plus |
Dsim\GD13293-PA | 74 | GD13293-PA | 17..74 | 111..169 | 152 | 52.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23442-PA | 214 | GJ23442-PA | 46..214 | 1..169 | 877 | 95.3 | Plus |
Dvir\GJ21167-PA | 184 | GJ21167-PA | 15..172 | 4..160 | 462 | 54.4 | Plus |
Dvir\GJ12578-PA | 188 | GJ12578-PA | 24..188 | 5..169 | 393 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22375-PA | 169 | GK22375-PA | 1..169 | 1..169 | 872 | 94.7 | Plus |
Dwil\GK17978-PA | 184 | GK17978-PA | 15..172 | 4..160 | 447 | 53.2 | Plus |
Dwil\GK10106-PA | 188 | GK10106-PA | 24..188 | 5..169 | 391 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25653-PA | 117 | GE25653-PA | 1..110 | 1..110 | 571 | 98.2 | Plus |
Dyak\Mp20-PA | 184 | GE12530-PA | 15..172 | 4..160 | 447 | 52.5 | Plus |
Dyak\GE20649-PA | 188 | GE20649-PA | 24..188 | 5..169 | 396 | 47.9 | Plus |
Translation from 75 to 584
> RE39031.hyp MAPRNKEQEQEVLNWVFAVIGEKVPSGQYEDILKDGIWLCKLANKLAPGS VKKIQERGTNFQLMENIQRFQAAVKKYGVPEEEIFQTADLFERRNIPQVT LSLYALGRITQKHPEYTGPTLGPKMADKNERSFTEEQLRAHEGELNLQMG FNKGASQAGHGGMGNTRHM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5023-PA | 169 | CG5023-PA | 1..169 | 1..169 | 887 | 100 | Plus |
Mp20-PA | 184 | CG4696-PA | 15..171 | 4..159 | 441 | 53.5 | Plus |
Mp20-PC | 189 | CG4696-PC | 15..171 | 4..159 | 441 | 53.5 | Plus |
Chd64-PC | 175 | CG14996-PC | 11..175 | 5..169 | 379 | 47.9 | Plus |
Chd64-PB | 188 | CG14996-PB | 24..188 | 5..169 | 379 | 47.9 | Plus |