Clone RE39082 Report

Search the DGRC for RE39082

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:390
Well:82
Vector:pFlc-1
Associated Gene/TranscriptImpE1-RB
Protein status:RE39082.pep: gold
Preliminary Size:135
Sequenced Size:931

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13669 2002-01-01 Sim4 clustering to Release 2
CG32356 2002-04-04 Blastp of sequenced clone
CG32356 2003-01-01 Sim4 clustering to Release 3
ImpE1 2008-04-29 Release 5.5 accounting
ImpE1 2008-08-15 Release 5.9 accounting
ImpE1 2008-12-18 5.12 accounting

Clone Sequence Records

RE39082.complete Sequence

931 bp (931 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095083

> RE39082.complete
TGAGTTCGTTGCTGACCATCGTTACGTGCGGACGTGCCCAGCTCAGCTCA
TCTTCGTGTGATGTGGCTGCACTTTGCACACTAAACTTAAGATCTGAGCC
CAAAACGTTTTCCAAGCTGCAAAAATATAACAAAAGTGCCGCGACGCGTG
TGACAAACGAAAATCGAGTAAAACGCGAAAAACATATATTTACGACTGCA
ACGAGAGGAATACCAGCTACAGGAAAATAACCCAAGAAAAGCGGCTGAAA
AATCGAAAAAACCAAAAGAAAACACACAAAAGGAGGGAAAAGCGAGAAAA
GCCTTCCCAGGGAGATCCAAAGCAGCTTCTTTGGAGATTCAGAAGCGGCA
ATGACGGCGACTGCGAGGCAGTCGGCAACATCGAGAAAGCAACCTGCGAT
CGCAATGCTCAATGGAAACGCTTTTACGGTTAAGCGGCTCTTAGCGCTGC
TGATCATCTTCACAGTGGTGGACGCGAGTCGATCCCTGGAGCTGGGCGAC
AAGTGCCAGCATGACATGGACTGCACGGATTTCATCAAGGGCAGCAGCTG
CTCCGCCCTCGGATACTGCGAGTGCGCCCCCTACTTCGTCCAGTTGGATT
CCAAGCGCTGTTTGTCATCCCAGCTCCTTGGCGGCGACTGCCAGCTGAGC
GAGCAGTGCTCCATGAAGGTGGCCAATAGCAGTTGTCTGGAGGGTGCATG
CCGCTGCGTCGAGGGATTCCTGCAGTTCCGCAAGCACACCTGTCTGGGAC
GTAAGTATCAGCCGACCGCCGGCCAGCTATTGTGGCCCTAATTCTCACCA
GATTGCCCGGGACTACTTACTCATATACTACAGATAATACAATTAACTGT
TTGGCATGCGGTCTTTTGGTGTATTGCAATAAACGGACAGCCGGGCAGCC
GACTAATAATCCCCCAAAAAAAAAAAAAAAA

RE39082.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE1-RB 1006 ImpE1-RB 18..931 3..916 4570 100 Plus
ImpE1-RA 6131 ImpE1-RA 85..832 3..750 3740 100 Plus
ImpE1.c 971 ImpE1.c 231..971 175..915 3705 100 Plus
ImpE1.c 971 ImpE1.c 3..175 3..175 865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8371838..8372140 619..915 1375 97.7 Plus
chr3L 24539361 chr3L 8366803..8367073 175..446 1295 99.3 Plus
chr3L 24539361 chr3L 8364425..8364597 3..175 865 100 Plus
chr3L 24539361 chr3L 8371129..8371301 446..618 865 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8379854..8380151 619..916 1490 100 Plus
3L 28110227 3L 8374800..8375071 175..446 1360 100 Plus
3L 28110227 3L 8372411..8372583 3..175 865 100 Plus
3L 28110227 3L 8379144..8379316 446..618 865 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8372954..8373251 619..916 1490 100 Plus
3L 28103327 3L 8367900..8368171 175..446 1360 100 Plus
3L 28103327 3L 8372244..8372416 446..618 865 100 Plus
3L 28103327 3L 8365511..8365683 3..175 865 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:28:42 has no hits.

RE39082.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:29:58 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8364423..8364597 1..175 99 -> Plus
chr3L 8366804..8367073 176..446 99 -> Plus
chr3L 8371130..8371301 447..618 100 -> Plus
chr3L 8371838..8372140 619..915 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:14:22 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 1..441 351..791 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:04:11 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 1..441 351..791 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:02:35 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 1..441 351..791 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:20 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 1..441 351..791 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:04 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 1..441 351..791 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:43:37 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 1..915 1..915 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:04:11 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 1..915 1..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:35 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 5..919 1..915 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:20 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 1..915 1..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:04 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 5..919 1..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:29:58 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8372409..8372583 1..175 99 -> Plus
3L 8374801..8375071 176..446 100 -> Plus
3L 8379145..8379316 447..618 100 -> Plus
3L 8379854..8380150 619..915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:29:58 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8372409..8372583 1..175 99 -> Plus
3L 8374801..8375071 176..446 100 -> Plus
3L 8379145..8379316 447..618 100 -> Plus
3L 8379854..8380150 619..915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:29:58 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8372409..8372583 1..175 99 -> Plus
3L 8374801..8375071 176..446 100 -> Plus
3L 8379145..8379316 447..618 100 -> Plus
3L 8379854..8380150 619..915 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:35 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8365509..8365683 1..175 99 -> Plus
arm_3L 8372954..8373250 619..915 100   Plus
arm_3L 8367901..8368171 176..446 100 -> Plus
arm_3L 8372245..8372416 447..618 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:38 Download gff for RE39082.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8367901..8368171 176..446 100 -> Plus
3L 8372245..8372416 447..618 100 -> Plus
3L 8372954..8373250 619..915 100   Plus
3L 8365509..8365683 1..175 99 -> Plus

RE39082.pep Sequence

Translation from 350 to 790

> RE39082.pep
MTATARQSATSRKQPAIAMLNGNAFTVKRLLALLIIFTVVDASRSLELGD
KCQHDMDCTDFIKGSSCSALGYCECAPYFVQLDSKRCLSSQLLGGDCQLS
EQCSMKVANSSCLEGACRCVEGFLQFRKHTCLGRKYQPTAGQLLWP*

RE39082.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24392-PA 1588 GF24392-PA 1..115 19..133 595 95.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14308-PA 1617 GG14308-PA 1..133 1..133 707 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15060-PA 1617 GH15060-PA 15..136 12..133 560 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE1-PB 146 CG32356-PB 1..146 1..146 775 100 Plus
ImpE1-PC 1616 CG32356-PC 1..133 1..133 700 100 Plus
ImpE1-PA 1616 CG32356-PA 1..133 1..133 700 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12827-PA 1733 GI12827-PA 1..134 1..133 576 82.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24700-PA 1665 GL24700-PA 19..141 12..133 609 93.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16846-PA 1658 GA16846-PA 25..147 12..133 610 93.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25050-PA 1592 GM25050-PA 1..156 1..133 675 85.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14087-PA 576 GD14087-PA 1..133 1..133 696 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12968-PA 1640 GJ12968-PA 1..134 1..133 585 82.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17755-PA 1682 GK17755-PA 22..136 19..133 518 81.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20737-PA 1668 GE20737-PA 1..133 1..133 716 100 Plus

RE39082.hyp Sequence

Translation from 350 to 790

> RE39082.hyp
MTATARQSATSRKQPAIAMLNGNAFTVKRLLALLIIFTVVDASRSLELGD
KCQHDMDCTDFIKGSSCSALGYCECAPYFVQLDSKRCLSSQLLGGDCQLS
EQCSMKVANSSCLEGACRCVEGFLQFRKHTCLGRKYQPTAGQLLWP*

RE39082.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE1-PB 146 CG32356-PB 1..146 1..146 775 100 Plus
ImpE1-PC 1616 CG32356-PC 1..133 1..133 700 100 Plus
ImpE1-PA 1616 CG32356-PA 1..133 1..133 700 100 Plus