Clone RE39205 Report

Search the DGRC for RE39205

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:392
Well:5
Vector:pFlc-1
Associated Gene/Transcriptcmpy-RB
Protein status:RE39205.pep: gold
Preliminary Size:351
Sequenced Size:2751

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13253 2002-01-01 Sim4 clustering to Release 2
CG13253 2003-01-01 Sim4 clustering to Release 3
CG13253 2008-04-29 Release 5.5 accounting
CG13253 2008-08-15 Release 5.9 accounting
CG34260 2008-08-15 Release 5.9 accounting
CG13253 2008-12-18 5.12 accounting
CG34260 2008-12-18 5.12 accounting

Clone Sequence Records

RE39205.complete Sequence

2751 bp (2751 high quality bases) assembled on 2005-08-03

GenBank Submission: BT023764

> RE39205.complete
AGGTTAGTTCAGTCTCTTGCCTTAAATGGCCGCGTGCGGCAGACAAAAGC
GCATGAAAAATTCATTGGGAACCGTCGGAACCGAAAGTTTAGAGTCAGGA
TAGCGACAACAACAAGGACCACGGCACTACTATAGCGAATATAGTATATC
GAGTGCTAGTCCTAAACGTCTATCGTTAGGTGTAACGAGTCAACATGCAA
ATTGCCTGCGCCGGACCCGCAGTCGAATCCAGGGCCAGAATCCTTGCCAG
GCATCCTCATCATCAGCAGCAGCATCATCATCATTGGAGGCAGTGGAACG
CAAACGCACCGTAGAGCCAGCCAACAGGGCGCAATAAAAATTGCCTTTCG
ATAAATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGGGCGTGGTCCTGG
AGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGAAAGAGGGGGCTC
GCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCTTAGGATGCGCTC
GAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGCTGCTCATCTACT
TGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGCGGCAGCAACCAC
GTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGAGTGCGACGTGAT
CCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGTGGGATCCATGCA
AGTAAGTCCCGCTCCCAGAGCTCCAATTAAAATGATATTTTCCGGCCTGT
ACATGCCATCCATTTTGTATGCGAATCAAACGAAGAAATTGATATTAGGA
TTTATTCCAGCGGTCAGAACTCTGTTTGAAATTTTCATTTCGATTTGGTA
ATCTTTTGACTTTTGGTATAATGGAATAGAATTTTCTGTACGGTAGTAAT
CATAAAATCATTCTATGATTTAATTATTTATAAAGTGTTCCATTTTGTTT
CGAGAAATAGTCTTGTTATCAAACCAATTAAATTAATTTTAAATTTCGGT
TTGTACCTTTACCAATATTTTTGTTTCCAACATAAATTGGCACACTCTAA
ATTAGGTTTATTAGGTGCACAAAGCTTTGTTGTTTTGATTGCCTAACACA
CGAACGGGCTTTAATTTCCTTATATTAACGTTGGTTGAACAATGGTGGTC
AAAACAATAGAAAACAATTTAATAGTGTGTCATCCTGATGCTTTGATGAT
TACCCACAGGATTATCAACGTTTCTATTACATGTATACATGTATATATCA
AATTATACTTGTGTTAAACTCCCATGATTTTATGATTGATTAAACTTATT
AATTGTTTACATGTTAATAGGAAACTACAGCGATAATTTTAATTATAACA
TTCCATATTAGATCCGTGTTTGATATGGATATTGTTTTGAATCGTACCTC
ATTTATCGTTAACCTATTATAAATTGTTTGGTTTAAATGATTCGCAGAGA
CGTTTTTACTAACTATTTCCTAACTAAGCATGAAATGGTCACAAATTCAT
AAGCTCACCACGATCTTAATAATTGGCATTGATATAATTAAGAGCGTCAG
ACATCAGAGTGTCTCCTTCGAATTCCAACCCAATTCGCATCGTGAGTGAC
TGATTGGACTAATGGACTGATTGGAATTCACATCAGGCATCGTTCTCCTC
ATCTCACTCCGAGTAGAGAGTGTTAACTAATTGTTAACGTTTATCGAATC
GAAGACGGAATCTAATCAATTACTACTGGGATTCATTCCATCCATAGTCC
ATTGCGAGGATTATGCCCACATCTATTTATTCTATATGTCATATACACAC
CTCCAACTATTCGCAGATGTTGCCGCATATGCGCCAAAACTTTGGGCGAA
TCCTGCGGCGGTCCGGGCGGATTTTCCGGTCAATGTGAGCCGCCCCTGCA
GTGTGTGACCAAGCTGCCCATTAGCAGCGGATTGGGCGTGTGCATGGATT
TGCAGCACCTGACCGCCCTGACCTACAGTCAGCACGATAATTGTTCCGAC
AGCGATTCGATTGTTTTGGAGCCGGGCTGCGAGATCACCAACAAACGCTG
CCAGTGCTGGCCAACTATGCGCACCTGTCTCAGCGAACTGACCAGCGATG
GGGGATCCCCCGACGACTCTCGCTGGCACTTCAAGAACCTAGAGGACTGC
CAGTTGAATCTACAAAATCTAATAAAACTCGAACAGGAATTCGATGAAGA
CTACAAAATCTCACCGAGCAAATTCACATACAAAAAACTACGCAGAAAGC
GAAAATCTTTAAAGAAACGAATCATCATCTTGAAGGATTGAGCCCTGAAT
GCGCCATTGCGACTTTCTGCGTTCCCAGCTCTTAACTCAATAAAACAAAA
TGAGGAATCTCTGTACAGATAGTATGCTTACTTCTAACTAATTATATGGC
TATTATTAATAACGTACATATATAACAACATATACATATACATGAGGAAA
AAGTACATATGAGAAATAGACAAAATGTATGTATCCTAAGACATTTGTTA
CTTTATTGTTTTTAGAAAGCGCGTACGTATGTATAAATTTGCAATTTTTA
TTCCTACTGCCCCCGAAAAGAAAATATACAAAACAATAAATTGAAAACAT
TTACAAAATGTTATTGCTTTAAACAGATAACAAATACGAAATGTGCAAAA
TGTTGGAATTTTCCATAGGCCTAAGTCAAGCCATTCAATAAACAATAAAG
CCGAATGACAAATTTTGCTAACTGAAACAGCATCGAAAAAAAAAAAAAAA
A

RE39205.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13253-RB 2753 CG13253-RB 9..2747 1..2739 13680 99.9 Plus
CG13253-RC 1310 CG13253-RC 9..709 1..701 3490 99.8 Plus
CG13253-RC 1310 CG13253-RC 706..1310 1813..2417 3010 99.8 Plus
CG13253.a 1589 CG13253.a 985..1589 1813..2417 3010 99.8 Plus
CG13253.a 1589 CG13253.a 477..988 190..701 2560 100 Plus
CG13253.a 1589 CG13253.a 1..189 1..189 930 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20704565..20706324 1947..188 8800 100 Minus
chr3L 24539361 chr3L 20701850..20702312 2735..2273 2315 100 Minus
chr3L 24539361 chr3L 20702692..20702890 2145..1947 995 100 Minus
chr3L 24539361 chr3L 20708022..20708210 189..1 930 99.5 Minus
chr3L 24539361 chr3L 20702496..20702625 2272..2143 650 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20715553..20717312 1947..188 8800 100 Minus
3L 28110227 3L 20712834..20713300 2739..2273 2335 100 Minus
3L 28110227 3L 20713680..20713878 2145..1947 995 100 Minus
3L 28110227 3L 20719010..20719198 189..1 930 99.5 Minus
3L 28110227 3L 20713484..20713613 2272..2143 650 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20708653..20710412 1947..188 8800 100 Minus
3L 28103327 3L 20705934..20706400 2739..2273 2335 100 Minus
3L 28103327 3L 20706780..20706978 2145..1947 995 100 Minus
3L 28103327 3L 20712110..20712298 189..1 930 99.4 Minus
3L 28103327 3L 20706584..20706713 2272..2143 650 100 Minus
Blast to na_te.dros performed 2019-03-16 23:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4735..4814 2569..2652 147 71.8 Plus
transib2 2844 transib2 TRANSIB2 2844bp 337..480 883..1022 142 61.2 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 727..794 2568..2636 135 68.1 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 655..760 2536..2651 133 64.1 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 778..958 998..817 133 57.2 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 238..365 2449..2315 118 59.9 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 7194..7321 2449..2315 118 59.9 Minus
Stalker 7256 Stalker STALKER 7256bp 238..365 2449..2315 118 59.9 Minus
Stalker 7256 Stalker STALKER 7256bp 7087..7214 2449..2315 118 59.9 Minus
rover 7318 rover ROVER 7318bp 5228..5433 2416..2609 115 58.2 Plus

RE39205.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:01:10 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20702496..20702623 2145..2272 100 <- Minus
chr3L 20702693..20702889 1948..2144 100 <- Minus
chr3L 20701850..20702312 2273..2735 100 <- Minus
chr3L 20704565..20706322 190..1947 98 <- Minus
chr3L 20708022..20708210 1..189 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 20:14:25 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 15:55:48 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 18:18:08 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 16:36:31 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:45:40 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:32:42 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
CG13253-RB 1..2735 1..2735 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:48 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
CG13253-RB 1..2735 1..2735 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:18:08 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 3..2737 1..2735 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:31 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
CG13253-RB 1..2735 1..2735 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:40 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 3..2737 1..2735 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:10 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20719010..20719198 1..189 99   Minus
3L 20712838..20713300 2273..2735 100 <- Minus
3L 20713484..20713611 2145..2272 100 <- Minus
3L 20713681..20713877 1948..2144 100 <- Minus
3L 20715553..20717310 190..1947 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:10 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20719010..20719198 1..189 99   Minus
3L 20712838..20713300 2273..2735 100 <- Minus
3L 20713484..20713611 2145..2272 100 <- Minus
3L 20713681..20713877 1948..2144 100 <- Minus
3L 20715553..20717310 190..1947 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:10 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20719010..20719198 1..189 99   Minus
3L 20712838..20713300 2273..2735 100 <- Minus
3L 20713484..20713611 2145..2272 100 <- Minus
3L 20713681..20713877 1948..2144 100 <- Minus
3L 20715553..20717310 190..1947 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:18:08 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20705938..20706400 2273..2735 100 <- Minus
arm_3L 20706584..20706711 2145..2272 100 <- Minus
arm_3L 20706781..20706977 1948..2144 100 <- Minus
arm_3L 20708653..20710410 190..1947 100 <- Minus
arm_3L 20712110..20712298 1..189 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:05 Download gff for RE39205.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20712110..20712298 1..189 99   Minus
3L 20705938..20706400 2273..2735 100 <- Minus
3L 20706584..20706711 2145..2272 100 <- Minus
3L 20706781..20706977 1948..2144 100 <- Minus
3L 20708653..20710410 190..1947 100 <- Minus

RE39205.pep Sequence

Translation from 354 to 704

> RE39205.pep
MGGSARGVGRRGVVLEQDVRTRSSQGERKRGLAGKQQHNNAKLPLRMRSN
GSYFGRLNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIR
SPDCPGKGLMLWDPCK*

RE39205.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24119-PA 230 GF24119-PA 1..107 1..116 352 75 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13290-PA 268 GG13290-PA 1..116 1..116 580 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16980-PA 181 GH16980-PA 1..69 47..116 229 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-PB 116 CG13253-PB 1..116 1..116 627 100 Plus
cmpy-PD 273 CG13253-PD 1..116 1..116 627 100 Plus
cmpy-PC 273 CG13253-PC 1..116 1..116 627 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11895-PA 312 GI11895-PA 69..148 36..116 271 77.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12759-PA 192 GL12759-PA 1..134 1..116 399 64.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12155-PA 132 GA12155-PA 1..70 47..116 345 91.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22196-PA 268 GM22196-PA 1..116 1..116 609 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12171-PA 273 GD12171-PA 1..116 1..116 611 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13772-PA 221 GJ13772-PA 1..69 47..116 236 81.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10539-PA 223 GK10539-PA 1..96 47..116 227 61.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22953-PA 268 GE22953-PA 1..116 1..116 584 94 Plus
Dyak\GE22388-PA 226 GE22388-PA 1..116 1..116 571 92.2 Plus

RE39205.hyp Sequence

Translation from 354 to 704

> RE39205.hyp
MGGSARGVGRRGVVLEQDVRTRSSQGERKRGLAGKQQHNNAKLPLRMRSN
GSYFGRLNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIR
SPDCPGKGLMLWDPCK*

RE39205.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-PB 116 CG13253-PB 1..116 1..116 627 100 Plus
cmpy-PD 273 CG13253-PD 1..116 1..116 627 100 Plus
cmpy-PC 273 CG13253-PC 1..116 1..116 627 100 Plus