RE39205.complete Sequence
2751 bp (2751 high quality bases) assembled on 2005-08-03
GenBank Submission: BT023764
> RE39205.complete
AGGTTAGTTCAGTCTCTTGCCTTAAATGGCCGCGTGCGGCAGACAAAAGC
GCATGAAAAATTCATTGGGAACCGTCGGAACCGAAAGTTTAGAGTCAGGA
TAGCGACAACAACAAGGACCACGGCACTACTATAGCGAATATAGTATATC
GAGTGCTAGTCCTAAACGTCTATCGTTAGGTGTAACGAGTCAACATGCAA
ATTGCCTGCGCCGGACCCGCAGTCGAATCCAGGGCCAGAATCCTTGCCAG
GCATCCTCATCATCAGCAGCAGCATCATCATCATTGGAGGCAGTGGAACG
CAAACGCACCGTAGAGCCAGCCAACAGGGCGCAATAAAAATTGCCTTTCG
ATAAATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGGGCGTGGTCCTGG
AGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGAAAGAGGGGGCTC
GCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCTTAGGATGCGCTC
GAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGCTGCTCATCTACT
TGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGCGGCAGCAACCAC
GTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGAGTGCGACGTGAT
CCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGTGGGATCCATGCA
AGTAAGTCCCGCTCCCAGAGCTCCAATTAAAATGATATTTTCCGGCCTGT
ACATGCCATCCATTTTGTATGCGAATCAAACGAAGAAATTGATATTAGGA
TTTATTCCAGCGGTCAGAACTCTGTTTGAAATTTTCATTTCGATTTGGTA
ATCTTTTGACTTTTGGTATAATGGAATAGAATTTTCTGTACGGTAGTAAT
CATAAAATCATTCTATGATTTAATTATTTATAAAGTGTTCCATTTTGTTT
CGAGAAATAGTCTTGTTATCAAACCAATTAAATTAATTTTAAATTTCGGT
TTGTACCTTTACCAATATTTTTGTTTCCAACATAAATTGGCACACTCTAA
ATTAGGTTTATTAGGTGCACAAAGCTTTGTTGTTTTGATTGCCTAACACA
CGAACGGGCTTTAATTTCCTTATATTAACGTTGGTTGAACAATGGTGGTC
AAAACAATAGAAAACAATTTAATAGTGTGTCATCCTGATGCTTTGATGAT
TACCCACAGGATTATCAACGTTTCTATTACATGTATACATGTATATATCA
AATTATACTTGTGTTAAACTCCCATGATTTTATGATTGATTAAACTTATT
AATTGTTTACATGTTAATAGGAAACTACAGCGATAATTTTAATTATAACA
TTCCATATTAGATCCGTGTTTGATATGGATATTGTTTTGAATCGTACCTC
ATTTATCGTTAACCTATTATAAATTGTTTGGTTTAAATGATTCGCAGAGA
CGTTTTTACTAACTATTTCCTAACTAAGCATGAAATGGTCACAAATTCAT
AAGCTCACCACGATCTTAATAATTGGCATTGATATAATTAAGAGCGTCAG
ACATCAGAGTGTCTCCTTCGAATTCCAACCCAATTCGCATCGTGAGTGAC
TGATTGGACTAATGGACTGATTGGAATTCACATCAGGCATCGTTCTCCTC
ATCTCACTCCGAGTAGAGAGTGTTAACTAATTGTTAACGTTTATCGAATC
GAAGACGGAATCTAATCAATTACTACTGGGATTCATTCCATCCATAGTCC
ATTGCGAGGATTATGCCCACATCTATTTATTCTATATGTCATATACACAC
CTCCAACTATTCGCAGATGTTGCCGCATATGCGCCAAAACTTTGGGCGAA
TCCTGCGGCGGTCCGGGCGGATTTTCCGGTCAATGTGAGCCGCCCCTGCA
GTGTGTGACCAAGCTGCCCATTAGCAGCGGATTGGGCGTGTGCATGGATT
TGCAGCACCTGACCGCCCTGACCTACAGTCAGCACGATAATTGTTCCGAC
AGCGATTCGATTGTTTTGGAGCCGGGCTGCGAGATCACCAACAAACGCTG
CCAGTGCTGGCCAACTATGCGCACCTGTCTCAGCGAACTGACCAGCGATG
GGGGATCCCCCGACGACTCTCGCTGGCACTTCAAGAACCTAGAGGACTGC
CAGTTGAATCTACAAAATCTAATAAAACTCGAACAGGAATTCGATGAAGA
CTACAAAATCTCACCGAGCAAATTCACATACAAAAAACTACGCAGAAAGC
GAAAATCTTTAAAGAAACGAATCATCATCTTGAAGGATTGAGCCCTGAAT
GCGCCATTGCGACTTTCTGCGTTCCCAGCTCTTAACTCAATAAAACAAAA
TGAGGAATCTCTGTACAGATAGTATGCTTACTTCTAACTAATTATATGGC
TATTATTAATAACGTACATATATAACAACATATACATATACATGAGGAAA
AAGTACATATGAGAAATAGACAAAATGTATGTATCCTAAGACATTTGTTA
CTTTATTGTTTTTAGAAAGCGCGTACGTATGTATAAATTTGCAATTTTTA
TTCCTACTGCCCCCGAAAAGAAAATATACAAAACAATAAATTGAAAACAT
TTACAAAATGTTATTGCTTTAAACAGATAACAAATACGAAATGTGCAAAA
TGTTGGAATTTTCCATAGGCCTAAGTCAAGCCATTCAATAAACAATAAAG
CCGAATGACAAATTTTGCTAACTGAAACAGCATCGAAAAAAAAAAAAAAA
A
RE39205.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13253-RB | 2753 | CG13253-RB | 9..2747 | 1..2739 | 13680 | 99.9 | Plus |
CG13253-RC | 1310 | CG13253-RC | 9..709 | 1..701 | 3490 | 99.8 | Plus |
CG13253-RC | 1310 | CG13253-RC | 706..1310 | 1813..2417 | 3010 | 99.8 | Plus |
CG13253.a | 1589 | CG13253.a | 985..1589 | 1813..2417 | 3010 | 99.8 | Plus |
CG13253.a | 1589 | CG13253.a | 477..988 | 190..701 | 2560 | 100 | Plus |
CG13253.a | 1589 | CG13253.a | 1..189 | 1..189 | 930 | 99.4 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 20704565..20706324 | 1947..188 | 8800 | 100 | Minus |
chr3L | 24539361 | chr3L | 20701850..20702312 | 2735..2273 | 2315 | 100 | Minus |
chr3L | 24539361 | chr3L | 20702692..20702890 | 2145..1947 | 995 | 100 | Minus |
chr3L | 24539361 | chr3L | 20708022..20708210 | 189..1 | 930 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 20702496..20702625 | 2272..2143 | 650 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20715553..20717312 | 1947..188 | 8800 | 100 | Minus |
3L | 28110227 | 3L | 20712834..20713300 | 2739..2273 | 2335 | 100 | Minus |
3L | 28110227 | 3L | 20713680..20713878 | 2145..1947 | 995 | 100 | Minus |
3L | 28110227 | 3L | 20719010..20719198 | 189..1 | 930 | 99.5 | Minus |
3L | 28110227 | 3L | 20713484..20713613 | 2272..2143 | 650 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 20708653..20710412 | 1947..188 | 8800 | 100 | Minus |
3L | 28103327 | 3L | 20705934..20706400 | 2739..2273 | 2335 | 100 | Minus |
3L | 28103327 | 3L | 20706780..20706978 | 2145..1947 | 995 | 100 | Minus |
3L | 28103327 | 3L | 20712110..20712298 | 189..1 | 930 | 99.4 | Minus |
3L | 28103327 | 3L | 20706584..20706713 | 2272..2143 | 650 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 23:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 4735..4814 | 2569..2652 | 147 | 71.8 | Plus |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 337..480 | 883..1022 | 142 | 61.2 | Plus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 727..794 | 2568..2636 | 135 | 68.1 | Plus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 655..760 | 2536..2651 | 133 | 64.1 | Plus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 778..958 | 998..817 | 133 | 57.2 | Minus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 238..365 | 2449..2315 | 118 | 59.9 | Minus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 7194..7321 | 2449..2315 | 118 | 59.9 | Minus |
Stalker | 7256 | Stalker STALKER 7256bp | 238..365 | 2449..2315 | 118 | 59.9 | Minus |
Stalker | 7256 | Stalker STALKER 7256bp | 7087..7214 | 2449..2315 | 118 | 59.9 | Minus |
rover | 7318 | rover ROVER 7318bp | 5228..5433 | 2416..2609 | 115 | 58.2 | Plus |
RE39205.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:01:10 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 20702496..20702623 | 2145..2272 | 100 | <- | Minus |
chr3L | 20702693..20702889 | 1948..2144 | 100 | <- | Minus |
chr3L | 20701850..20702312 | 2273..2735 | 100 | <- | Minus |
chr3L | 20704565..20706322 | 190..1947 | 98 | <- | Minus |
chr3L | 20708022..20708210 | 1..189 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 20:14:25 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 15:55:48 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 18:18:08 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 16:36:31 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:45:40 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:32:42 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RB | 1..2735 | 1..2735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:48 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RB | 1..2735 | 1..2735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:18:08 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 3..2737 | 1..2735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:31 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RB | 1..2735 | 1..2735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:40 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 3..2737 | 1..2735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:10 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20719010..20719198 | 1..189 | 99 | | Minus |
3L | 20712838..20713300 | 2273..2735 | 100 | <- | Minus |
3L | 20713484..20713611 | 2145..2272 | 100 | <- | Minus |
3L | 20713681..20713877 | 1948..2144 | 100 | <- | Minus |
3L | 20715553..20717310 | 190..1947 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:10 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20719010..20719198 | 1..189 | 99 | | Minus |
3L | 20712838..20713300 | 2273..2735 | 100 | <- | Minus |
3L | 20713484..20713611 | 2145..2272 | 100 | <- | Minus |
3L | 20713681..20713877 | 1948..2144 | 100 | <- | Minus |
3L | 20715553..20717310 | 190..1947 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:10 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20719010..20719198 | 1..189 | 99 | | Minus |
3L | 20712838..20713300 | 2273..2735 | 100 | <- | Minus |
3L | 20713484..20713611 | 2145..2272 | 100 | <- | Minus |
3L | 20713681..20713877 | 1948..2144 | 100 | <- | Minus |
3L | 20715553..20717310 | 190..1947 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:18:08 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20705938..20706400 | 2273..2735 | 100 | <- | Minus |
arm_3L | 20706584..20706711 | 2145..2272 | 100 | <- | Minus |
arm_3L | 20706781..20706977 | 1948..2144 | 100 | <- | Minus |
arm_3L | 20708653..20710410 | 190..1947 | 100 | <- | Minus |
arm_3L | 20712110..20712298 | 1..189 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:05 Download gff for
RE39205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20712110..20712298 | 1..189 | 99 | | Minus |
3L | 20705938..20706400 | 2273..2735 | 100 | <- | Minus |
3L | 20706584..20706711 | 2145..2272 | 100 | <- | Minus |
3L | 20706781..20706977 | 1948..2144 | 100 | <- | Minus |
3L | 20708653..20710410 | 190..1947 | 100 | <- | Minus |
RE39205.pep Sequence
Translation from 354 to 704
> RE39205.pep
MGGSARGVGRRGVVLEQDVRTRSSQGERKRGLAGKQQHNNAKLPLRMRSN
GSYFGRLNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIR
SPDCPGKGLMLWDPCK*
RE39205.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF24119-PA | 230 | GF24119-PA | 1..107 | 1..116 | 352 | 75 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13290-PA | 268 | GG13290-PA | 1..116 | 1..116 | 580 | 94 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH16980-PA | 181 | GH16980-PA | 1..69 | 47..116 | 229 | 80 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-PB | 116 | CG13253-PB | 1..116 | 1..116 | 627 | 100 | Plus |
cmpy-PD | 273 | CG13253-PD | 1..116 | 1..116 | 627 | 100 | Plus |
cmpy-PC | 273 | CG13253-PC | 1..116 | 1..116 | 627 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI11895-PA | 312 | GI11895-PA | 69..148 | 36..116 | 271 | 77.8 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL12759-PA | 192 | GL12759-PA | 1..134 | 1..116 | 399 | 64.2 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA12155-PA | 132 | GA12155-PA | 1..70 | 47..116 | 345 | 91.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22196-PA | 268 | GM22196-PA | 1..116 | 1..116 | 609 | 100 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12171-PA | 273 | GD12171-PA | 1..116 | 1..116 | 611 | 100 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ13772-PA | 221 | GJ13772-PA | 1..69 | 47..116 | 236 | 81.4 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK10539-PA | 223 | GK10539-PA | 1..96 | 47..116 | 227 | 61.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22953-PA | 268 | GE22953-PA | 1..116 | 1..116 | 584 | 94 | Plus |
Dyak\GE22388-PA | 226 | GE22388-PA | 1..116 | 1..116 | 571 | 92.2 | Plus |
RE39205.hyp Sequence
Translation from 354 to 704
> RE39205.hyp
MGGSARGVGRRGVVLEQDVRTRSSQGERKRGLAGKQQHNNAKLPLRMRSN
GSYFGRLNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIR
SPDCPGKGLMLWDPCK*
RE39205.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-PB | 116 | CG13253-PB | 1..116 | 1..116 | 627 | 100 | Plus |
cmpy-PD | 273 | CG13253-PD | 1..116 | 1..116 | 627 | 100 | Plus |
cmpy-PC | 273 | CG13253-PC | 1..116 | 1..116 | 627 | 100 | Plus |