BDGP Sequence Production Resources |
Search the DGRC for RE39465
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 394 |
Well: | 65 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG45057-RA |
Protein status: | RE39465.pep: gold |
Preliminary Size: | 716 |
Sequenced Size: | 1170 |
Gene | Date | Evidence |
---|---|---|
CG4893 | 2001-12-17 | Blastp of sequenced clone |
CG4893 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4893 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4893 | 2008-04-29 | Release 5.5 accounting |
CG4893 | 2008-08-15 | Release 5.9 accounting |
CG4893 | 2008-12-18 | 5.12 accounting |
1170 bp (1170 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071358
> RE39465.complete AGTTGAGTTTCGACATCGCCAGCATTCGCGCGTTTGCCTTAAAGTGATTG GAAAATAGCCGAGGAATAAAACAAATATTTTTTTGGAAATATATTCAAGA ATTTTTGGAACTTTTTTAATAACAAATATCCACCATGTCCGAGGTAGCTG CAGCAAATGGAAGCCCCTCCCCAGCGCCAACTCCTGAGGTGCCCGCTACC GAGTTGGCCCAATTGGCGCTGGAGGATGAGCCCAAGGTTAGCTTTTCGGA TCAGTTCAAGGCCTTCTCCAAGTTCGGGGACTCCAAGTCCGATGGCAAGC TGATAACGCTGTCGCAGAGTGACAAGTGGATGAAACAGGCCAAAGTTATC GACAAGAAGATCACCACCACGGATACAGGCATCCACTTCAAGAAGTTCAA GGCCATGAAGATCTCGCTCAGCGACTACAACAAATTCCTGGACGATCTGG CCAAGACGAAAAAGGTGGAGCTGTCGGAGATCAAGCAAAAGTTGGCCAGT TGTGGAGCTCCAGGAGTTGTGTCCGTTTCGGCTGGAAAAGCCGCAGCTGC CGTGGATCGATTGACGGATACGAGCAAGTACACCGGTTCCCACAAGGAGC GTTTCGATGCCTCCGGAAAGGGCAAGGGTATCGCGGGCAGACGGAACGTG GTCGATGGATCCGGATATGTGAGTGGCTACCAGCACAAGGACACCTACGA CAATGCCCACTAGATGGGGTAACCACCGTTTTTCACCCTCTCATAAATCT GTATTTCTAACTTTTGTGTTTCCCTAGTTAATGTCTCCCAATCTAATTTA TCTTTGTGTATATAATAAGTTTGTGATAATTTAAGTGCTTACAAATAAAC TTATATTTTTGATTATAATTTTTGAGTTCCTTTACTTTGTTTATCCTTCT TTGTCCTTTGATACGTAAAATTTTGAAGCGGCCCAAAAAGAGTTCAAAAG TAAATCCAAATCAAATTTATATACATTTCATGGCAATCAAACCCATGTTT GGTAGTCTTAAGATAACAGATAAACTTTTAATATTACAATTTGTGAAAGA AATTTAAATATCACATATGGAAACCAAAGATATACGACATACATATGTAG ATATATGTTATGTTTTCACAAGAATTTTGCTTGAATAAATACACTTTAAA ATAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16344508..16345134 | 1152..526 | 3105 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 16345396..16345799 | 531..128 | 1990 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 16349029..16349155 | 127..1 | 635 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16354745..16355372 | 1153..526 | 3125 | 99.8 | Minus |
3L | 28110227 | 3L | 16355633..16356036 | 531..128 | 2020 | 100 | Minus |
3L | 28110227 | 3L | 16359299..16359425 | 127..1 | 635 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16347845..16348472 | 1153..526 | 3125 | 99.8 | Minus |
3L | 28103327 | 3L | 16348733..16349136 | 531..128 | 2020 | 100 | Minus |
3L | 28103327 | 3L | 16352399..16352525 | 127..1 | 635 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 3802..3926 | 922..794 | 148 | 61.5 | Minus |
412 | 7567 | 412 412 7567bp | 6853..7012 | 836..991 | 134 | 57.7 | Plus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1610..1701 | 909..812 | 123 | 64.3 | Minus |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 6959..7009 | 201..252 | 113 | 71.2 | Plus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 1725..1892 | 923..755 | 113 | 53.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16344508..16345129 | 531..1152 | 99 | <- | Minus |
chr3L | 16345397..16345799 | 128..530 | 99 | <- | Minus |
chr3L | 16349029..16349155 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4893-RA | 1..579 | 135..713 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4893-RA | 1..579 | 135..713 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4893-RC | 1..579 | 135..713 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4893-RA | 1..579 | 135..713 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG45057-RC | 1..579 | 135..713 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4893-RA | 1..1152 | 1..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4893-RA | 1..1152 | 1..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4893-RA | 4..1155 | 1..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4893-RA | 1..1152 | 1..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG45057-RA | 4..1155 | 1..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16354746..16355367 | 531..1152 | 100 | <- | Minus |
3L | 16355634..16356036 | 128..530 | 100 | <- | Minus |
3L | 16359299..16359425 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16354746..16355367 | 531..1152 | 100 | <- | Minus |
3L | 16355634..16356036 | 128..530 | 100 | <- | Minus |
3L | 16359299..16359425 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16354746..16355367 | 531..1152 | 100 | <- | Minus |
3L | 16355634..16356036 | 128..530 | 100 | <- | Minus |
3L | 16359299..16359425 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16347846..16348467 | 531..1152 | 100 | <- | Minus |
arm_3L | 16348734..16349136 | 128..530 | 100 | <- | Minus |
arm_3L | 16352399..16352525 | 1..127 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16347846..16348467 | 531..1152 | 100 | <- | Minus |
3L | 16348734..16349136 | 128..530 | 100 | <- | Minus |
3L | 16352399..16352525 | 1..127 | 100 | Minus |
Translation from 134 to 712
> RE39465.pep MSEVAAANGSPSPAPTPEVPATELAQLALEDEPKVSFSDQFKAFSKFGDS KSDGKLITLSQSDKWMKQAKVIDKKITTTDTGIHFKKFKAMKISLSDYNK FLDDLAKTKKVELSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYT GSHKERFDASGKGKGIAGRRNVVDGSGYVSGYQHKDTYDNAH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24388-PA | 201 | GF24388-PA | 31..200 | 24..191 | 821 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13461-PA | 203 | GG13461-PA | 12..203 | 1..192 | 993 | 99 | Plus |
Dere\GG13995-PA | 117 | GG13995-PA | 5..108 | 30..127 | 134 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15597-PA | 192 | GH15597-PA | 25..192 | 26..192 | 755 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ringer-PB | 192 | CG45057-PB | 1..192 | 1..192 | 977 | 100 | Plus |
ringer-PD | 192 | CG45057-PD | 1..192 | 1..192 | 977 | 100 | Plus |
ringer-PC | 192 | CG45057-PC | 1..192 | 1..192 | 977 | 100 | Plus |
ringer-PA | 192 | CG45057-PA | 1..192 | 1..192 | 977 | 100 | Plus |
CG6709-PB | 117 | CG6709-PB | 5..112 | 30..131 | 138 | 31.5 | Plus |
CG6709-PA | 117 | CG6709-PA | 5..112 | 30..131 | 138 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11286-PA | 186 | GI11286-PA | 6..186 | 7..192 | 784 | 82.4 | Plus |
Dmoj\GI16876-PA | 186 | GI16876-PA | 6..186 | 7..192 | 784 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18002-PA | 226 | GL18002-PA | 33..226 | 1..192 | 902 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18507-PA | 205 | GA18507-PA | 12..205 | 1..192 | 907 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24410-PA | 203 | GM24410-PA | 12..203 | 1..192 | 985 | 98.4 | Plus |
Dsec\GM24831-PA | 117 | GM24831-PA | 5..108 | 30..127 | 136 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12480-PA | 203 | GD12480-PA | 12..203 | 1..192 | 992 | 98.4 | Plus |
Dsim\GD12883-PA | 117 | GD12883-PA | 5..108 | 30..127 | 136 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12625-PA | 186 | GJ12625-PA | 1..186 | 1..192 | 816 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20829-PA | 191 | GK20829-PA | 8..190 | 11..191 | 816 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22907-PA | 203 | GE22907-PA | 12..203 | 1..192 | 989 | 98.4 | Plus |
Dyak\GE22559-PA | 203 | GE22559-PA | 12..203 | 1..192 | 983 | 97.9 | Plus |
Dyak\GE20291-PA | 117 | GE20291-PA | 5..108 | 30..127 | 139 | 29.8 | Plus |
Translation from 134 to 712
> RE39465.hyp MSEVAAANGSPSPAPTPEVPATELAQLALEDEPKVSFSDQFKAFSKFGDS KSDGKLITLSQSDKWMKQAKVIDKKITTTDTGIHFKKFKAMKISLSDYNK FLDDLAKTKKVELSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYT GSHKERFDASGKGKGIAGRRNVVDGSGYVSGYQHKDTYDNAH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG45057-PB | 192 | CG45057-PB | 1..192 | 1..192 | 977 | 100 | Plus |
CG45057-PD | 192 | CG45057-PD | 1..192 | 1..192 | 977 | 100 | Plus |
CG45057-PC | 192 | CG45057-PC | 1..192 | 1..192 | 977 | 100 | Plus |
CG45057-PA | 192 | CG45057-PA | 1..192 | 1..192 | 977 | 100 | Plus |
CG6709-PB | 117 | CG6709-PB | 5..112 | 30..131 | 138 | 31.5 | Plus |