Clone RE39465 Report

Search the DGRC for RE39465

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:394
Well:65
Vector:pFlc-1
Associated Gene/TranscriptCG45057-RA
Protein status:RE39465.pep: gold
Preliminary Size:716
Sequenced Size:1170

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4893 2001-12-17 Blastp of sequenced clone
CG4893 2002-01-01 Sim4 clustering to Release 2
CG4893 2003-01-01 Sim4 clustering to Release 3
CG4893 2008-04-29 Release 5.5 accounting
CG4893 2008-08-15 Release 5.9 accounting
CG4893 2008-12-18 5.12 accounting

Clone Sequence Records

RE39465.complete Sequence

1170 bp (1170 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071358

> RE39465.complete
AGTTGAGTTTCGACATCGCCAGCATTCGCGCGTTTGCCTTAAAGTGATTG
GAAAATAGCCGAGGAATAAAACAAATATTTTTTTGGAAATATATTCAAGA
ATTTTTGGAACTTTTTTAATAACAAATATCCACCATGTCCGAGGTAGCTG
CAGCAAATGGAAGCCCCTCCCCAGCGCCAACTCCTGAGGTGCCCGCTACC
GAGTTGGCCCAATTGGCGCTGGAGGATGAGCCCAAGGTTAGCTTTTCGGA
TCAGTTCAAGGCCTTCTCCAAGTTCGGGGACTCCAAGTCCGATGGCAAGC
TGATAACGCTGTCGCAGAGTGACAAGTGGATGAAACAGGCCAAAGTTATC
GACAAGAAGATCACCACCACGGATACAGGCATCCACTTCAAGAAGTTCAA
GGCCATGAAGATCTCGCTCAGCGACTACAACAAATTCCTGGACGATCTGG
CCAAGACGAAAAAGGTGGAGCTGTCGGAGATCAAGCAAAAGTTGGCCAGT
TGTGGAGCTCCAGGAGTTGTGTCCGTTTCGGCTGGAAAAGCCGCAGCTGC
CGTGGATCGATTGACGGATACGAGCAAGTACACCGGTTCCCACAAGGAGC
GTTTCGATGCCTCCGGAAAGGGCAAGGGTATCGCGGGCAGACGGAACGTG
GTCGATGGATCCGGATATGTGAGTGGCTACCAGCACAAGGACACCTACGA
CAATGCCCACTAGATGGGGTAACCACCGTTTTTCACCCTCTCATAAATCT
GTATTTCTAACTTTTGTGTTTCCCTAGTTAATGTCTCCCAATCTAATTTA
TCTTTGTGTATATAATAAGTTTGTGATAATTTAAGTGCTTACAAATAAAC
TTATATTTTTGATTATAATTTTTGAGTTCCTTTACTTTGTTTATCCTTCT
TTGTCCTTTGATACGTAAAATTTTGAAGCGGCCCAAAAAGAGTTCAAAAG
TAAATCCAAATCAAATTTATATACATTTCATGGCAATCAAACCCATGTTT
GGTAGTCTTAAGATAACAGATAAACTTTTAATATTACAATTTGTGAAAGA
AATTTAAATATCACATATGGAAACCAAAGATATACGACATACATATGTAG
ATATATGTTATGTTTTCACAAGAATTTTGCTTGAATAAATACACTTTAAA
ATAAAAAAAAAAAAAAAAAA

RE39465.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4893-RA 1153 CG4893-RA 1..1153 1..1153 5765 100 Plus
CG34249.a 1337 CG34249.a 312..1337 128..1153 5130 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16344508..16345134 1152..526 3105 99.7 Minus
chr3L 24539361 chr3L 16345396..16345799 531..128 1990 99.5 Minus
chr3L 24539361 chr3L 16349029..16349155 127..1 635 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16354745..16355372 1153..526 3125 99.8 Minus
3L 28110227 3L 16355633..16356036 531..128 2020 100 Minus
3L 28110227 3L 16359299..16359425 127..1 635 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16347845..16348472 1153..526 3125 99.8 Minus
3L 28103327 3L 16348733..16349136 531..128 2020 100 Minus
3L 28103327 3L 16352399..16352525 127..1 635 100 Minus
Blast to na_te.dros performed 2019-03-16 03:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3802..3926 922..794 148 61.5 Minus
412 7567 412 412 7567bp 6853..7012 836..991 134 57.7 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1610..1701 909..812 123 64.3 Minus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 6959..7009 201..252 113 71.2 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 1725..1892 923..755 113 53.5 Minus

RE39465.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:30:39 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16344508..16345129 531..1152 99 <- Minus
chr3L 16345397..16345799 128..530 99 <- Minus
chr3L 16349029..16349155 1..127 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:14:33 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 1..579 135..713 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:11 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 1..579 135..713 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:45:58 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RC 1..579 135..713 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:22 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 1..579 135..713 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:16 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG45057-RC 1..579 135..713 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:48 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 1..1152 1..1152 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:11 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 1..1152 1..1152 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:45:58 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 4..1155 1..1152 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:22 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 1..1152 1..1152 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:16 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
CG45057-RA 4..1155 1..1152 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:39 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16354746..16355367 531..1152 100 <- Minus
3L 16355634..16356036 128..530 100 <- Minus
3L 16359299..16359425 1..127 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:39 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16354746..16355367 531..1152 100 <- Minus
3L 16355634..16356036 128..530 100 <- Minus
3L 16359299..16359425 1..127 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:39 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16354746..16355367 531..1152 100 <- Minus
3L 16355634..16356036 128..530 100 <- Minus
3L 16359299..16359425 1..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:45:58 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16347846..16348467 531..1152 100 <- Minus
arm_3L 16348734..16349136 128..530 100 <- Minus
arm_3L 16352399..16352525 1..127 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:57 Download gff for RE39465.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16347846..16348467 531..1152 100 <- Minus
3L 16348734..16349136 128..530 100 <- Minus
3L 16352399..16352525 1..127 100   Minus

RE39465.pep Sequence

Translation from 134 to 712

> RE39465.pep
MSEVAAANGSPSPAPTPEVPATELAQLALEDEPKVSFSDQFKAFSKFGDS
KSDGKLITLSQSDKWMKQAKVIDKKITTTDTGIHFKKFKAMKISLSDYNK
FLDDLAKTKKVELSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYT
GSHKERFDASGKGKGIAGRRNVVDGSGYVSGYQHKDTYDNAH*

RE39465.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24388-PA 201 GF24388-PA 31..200 24..191 821 93.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13461-PA 203 GG13461-PA 12..203 1..192 993 99 Plus
Dere\GG13995-PA 117 GG13995-PA 5..108 30..127 134 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15597-PA 192 GH15597-PA 25..192 26..192 755 86.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
ringer-PB 192 CG45057-PB 1..192 1..192 977 100 Plus
ringer-PD 192 CG45057-PD 1..192 1..192 977 100 Plus
ringer-PC 192 CG45057-PC 1..192 1..192 977 100 Plus
ringer-PA 192 CG45057-PA 1..192 1..192 977 100 Plus
CG6709-PB 117 CG6709-PB 5..112 30..131 138 31.5 Plus
CG6709-PA 117 CG6709-PA 5..112 30..131 138 31.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11286-PA 186 GI11286-PA 6..186 7..192 784 82.4 Plus
Dmoj\GI16876-PA 186 GI16876-PA 6..186 7..192 784 82.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18002-PA 226 GL18002-PA 33..226 1..192 902 89.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18507-PA 205 GA18507-PA 12..205 1..192 907 89.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24410-PA 203 GM24410-PA 12..203 1..192 985 98.4 Plus
Dsec\GM24831-PA 117 GM24831-PA 5..108 30..127 136 30.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12480-PA 203 GD12480-PA 12..203 1..192 992 98.4 Plus
Dsim\GD12883-PA 117 GD12883-PA 5..108 30..127 136 30.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12625-PA 186 GJ12625-PA 1..186 1..192 816 83.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20829-PA 191 GK20829-PA 8..190 11..191 816 88 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22907-PA 203 GE22907-PA 12..203 1..192 989 98.4 Plus
Dyak\GE22559-PA 203 GE22559-PA 12..203 1..192 983 97.9 Plus
Dyak\GE20291-PA 117 GE20291-PA 5..108 30..127 139 29.8 Plus

RE39465.hyp Sequence

Translation from 134 to 712

> RE39465.hyp
MSEVAAANGSPSPAPTPEVPATELAQLALEDEPKVSFSDQFKAFSKFGDS
KSDGKLITLSQSDKWMKQAKVIDKKITTTDTGIHFKKFKAMKISLSDYNK
FLDDLAKTKKVELSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYT
GSHKERFDASGKGKGIAGRRNVVDGSGYVSGYQHKDTYDNAH*

RE39465.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-PB 192 CG45057-PB 1..192 1..192 977 100 Plus
CG45057-PD 192 CG45057-PD 1..192 1..192 977 100 Plus
CG45057-PC 192 CG45057-PC 1..192 1..192 977 100 Plus
CG45057-PA 192 CG45057-PA 1..192 1..192 977 100 Plus
CG6709-PB 117 CG6709-PB 5..112 30..131 138 31.5 Plus