BDGP Sequence Production Resources |
Search the DGRC for RE39562
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 395 |
Well: | 62 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pex11-RA |
Protein status: | RE39562.pep: gold |
Preliminary Size: | 726 |
Sequenced Size: | 948 |
Gene | Date | Evidence |
---|---|---|
CG8315 | 2001-12-14 | Blastp of sequenced clone |
CG8315 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8315 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8315 | 2008-04-29 | Release 5.5 accounting |
CG8315 | 2008-08-15 | Release 5.9 accounting |
CG8315 | 2008-12-18 | 5.12 accounting |
948 bp (948 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071362
> RE39562.complete AATAATCGAACTTTGGATTTTGGATTTGGCATAATTTTGATTTTAGCTGT CCAACGAGCTGTGCGGTCACAACATAAATATGGATCAACTGGTGCAGTTG AACAATCAGGCTGGCGGACGGGACAAAATCGCCCGACTTATTCAGTATGC CTCGCGTGCAATGTGGGACTCGCTGGAGTCCGCCAATTCCAATCCAGCGC TTGTGGACAACTTCAAGACGGTTGAATACATCCTGAGCACATTCCGAAAA TTACTCCGCTTTGGTAAGTGCGTTGATGTATTCTACGGCGCTCTGAAGAC CATTCACCATCCGGATCTTAACATCCGTGTGACGCTCACCTTAAGCAAGC TGTCACAATCGCTGTTCCTCTTCGCCGATCACTTCCTCTGGCTGGCCAGG ACGGGACTGACGGCGGTGAACGCCAAGCGCTGGTCCAACATCGCCAATAA GTACTGGCTCTTCTCGATCATAATGAACTTGTGCCGGGACTTCTACGAGA TCCTGAGAGTACTGGACCTGCATCGATCCGGTAGCAAGAGCGGCATTTCG CGCTGCCGCATCCCCGCGAGCATCAACTCGCCGGAGGACTTTAAGCGCCT TGCCCTGCAGTCCTACGTGCTGATGCAGGGACACAAAGACATAGTTGTGG ACACGGTGAAGAATGCGTGCGACTTCTTCATTCCGCTGACGGCTCTGGGT TACACAAGTCTCACGCCCCGGACAATTGGACTCCTGGGGGCAATTTCATC GCTGGCTGGACTCTGGGCTCTGCTGGAACCGAGGGCCAAGCTAACGCCTG CATAACACCTGATATTGGAAACTTTGTAGATAAGGGCCTGTATTTCCTTG TATCTATTTTAAGTGTTGTATGTATTGTATTTGTATTTGTGCTCGGATTA AGCTGAATGATAAACAAACGATTTTATTAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 590..636 | 893..848 | 124 | 76.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 11879370..11879620 | 1..251 | 100 | Minus | |
chr2R | 11878636..11879316 | 252..932 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8315-RA | 1..726 | 80..805 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8315-RA | 1..726 | 80..805 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex11-RA | 1..726 | 80..805 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8315-RA | 1..726 | 80..805 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex11-RA | 1..726 | 80..805 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8315-RA | 1..932 | 1..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8315-RA | 1..932 | 1..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex11-RA | 25..956 | 1..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8315-RA | 1..932 | 1..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pex11-RA | 25..956 | 1..932 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15992101..15992351 | 1..251 | 100 | Minus | |
2R | 15991367..15992047 | 252..932 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15992101..15992351 | 1..251 | 100 | Minus | |
2R | 15991367..15992047 | 252..932 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15992101..15992351 | 1..251 | 100 | Minus | |
2R | 15991367..15992047 | 252..932 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 11878872..11879552 | 252..932 | 100 | <- | Minus |
arm_2R | 11879606..11879856 | 1..251 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15992566..15993246 | 252..932 | 100 | <- | Minus |
2R | 15993300..15993550 | 1..251 | 100 | Minus |
Translation from 79 to 804
> RE39562.pep MDQLVQLNNQAGGRDKIARLIQYASRAMWDSLESANSNPALVDNFKTVEY ILSTFRKLLRFGKCVDVFYGALKTIHHPDLNIRVTLTLSKLSQSLFLFAD HFLWLARTGLTAVNAKRWSNIANKYWLFSIIMNLCRDFYEILRVLDLHRS GSKSGISRCRIPASINSPEDFKRLALQSYVLMQGHKDIVVDTVKNACDFF IPLTALGYTSLTPRTIGLLGAISSLAGLWALLEPRAKLTPA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13330-PA | 243 | GF13330-PA | 3..242 | 1..240 | 1164 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22312-PA | 241 | GG22312-PA | 1..241 | 1..241 | 1239 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19830-PA | 241 | GH19830-PA | 1..241 | 1..241 | 1049 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pex11-PA | 241 | CG8315-PA | 1..241 | 1..241 | 1240 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20418-PA | 241 | GI20418-PA | 1..241 | 1..241 | 1068 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20649-PA | 241 | GL20649-PA | 1..241 | 1..241 | 1122 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20979-PA | 241 | GA20979-PA | 1..241 | 1..241 | 1129 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20102-PA | 277 | GM20102-PA | 1..230 | 1..230 | 1192 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25578-PA | 243 | GD25578-PA | 3..243 | 1..241 | 1250 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20090-PA | 214 | GJ20090-PA | 1..214 | 28..241 | 942 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22099-PA | 241 | GK22099-PA | 1..241 | 1..241 | 1114 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14109-PA | 243 | GE14109-PA | 3..243 | 1..241 | 1232 | 95.9 | Plus |
Translation from 79 to 804
> RE39562.hyp MDQLVQLNNQAGGRDKIARLIQYASRAMWDSLESANSNPALVDNFKTVEY ILSTFRKLLRFGKCVDVFYGALKTIHHPDLNIRVTLTLSKLSQSLFLFAD HFLWLARTGLTAVNAKRWSNIANKYWLFSIIMNLCRDFYEILRVLDLHRS GSKSGISRCRIPASINSPEDFKRLALQSYVLMQGHKDIVVDTVKNACDFF IPLTALGYTSLTPRTIGLLGAISSLAGLWALLEPRAKLTPA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pex11-PA | 241 | CG8315-PA | 1..241 | 1..241 | 1240 | 100 | Plus |