BDGP Sequence Production Resources |
Search the DGRC for RE39769
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 397 |
Well: | 69 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11906-RA |
Protein status: | RE39769.pep: gold |
Preliminary Size: | 1949 |
Sequenced Size: | 2315 |
Gene | Date | Evidence |
---|---|---|
CG11906 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11906 | 2002-01-03 | Blastp of sequenced clone |
CG11906 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11906 | 2008-04-29 | Release 5.5 accounting |
CG11906 | 2008-08-15 | Release 5.9 accounting |
CG11906 | 2008-12-18 | 5.12 accounting |
2315 bp (2315 high quality bases) assembled on 2002-01-03
GenBank Submission: AY075484
> RE39769.complete TATGACAACAACGGTCACACTGCATTCTGCTCTTCAAAAAATATTTACTA GATAAAACACTTGGAATTCGGCGGATTTGAGTGTAGTTTTTCGACTCACG CATCTAATGCGGCACAGTAATGACATAAGGATCAAGTGCAATATATTGAG TGTGCCATTTGTTATCCAGTAGCGCCCCTATTACAGCAGGATGCAGGATG CCACGGCTCCGGATCCGGAACCCAGCAGCACCAACGGCAATTGCTCCGTT GAACATGACAATCGGCAGGATCAGGATGAGAACCACGTAGGCGCCGAGCG GGAAGCGGAGGCCAACGATGCCAACTGCACCGTTTGTGGTGCCGCCAAGG CATCGGCGCTTTTGGATCTGCGCTCCAACCATGTAATGCAACGTCGCCTA AGTCGCGACTGGAAGATTCATGCAGATGTAATCCGATCCACATTGAAGGC CATTTGCGTGGAGTGCGTGTGCAAGCTGAACATGCACTCGGAGGTCACTC GATCCCTGATGCAGCGCATGCAACGGCTGCAGCGTTCCGGTGGTGAAACC ACCAAGGTGACAACCACCACGACATCGCCCAGCCAGCACAGTCCACCCAT TGCTGATGCAGAGGTGTCGACCACCTTGATTGAGAGTCAGGAGGAGGTGG CCCACAGCGGGCAGAGCGTTCGCTCGCGTTCTTCCTGCTCCGTGCTGGAA GTATACCTCGCTCAACAACCATATTCTCCATCGGCCAAGGAAACGGAAGA GAAGCATGCGGAGGGCTGGAAATGGCGAACACGGCTGGAGTGTCACGAAT GTGGTCGGGCCTATTTTCGACGGGATTACTACGCCCAGCACTTGAGGCGC TGCTCCAAAACGCGCAGGAAGCAGCCACGTCCATCGCGCGTCAAATGCCG GGTACTAAATGAGGCGAGCTATGATGAAGAGGCGCCATCCAGAGCCATCC GATCATCGCGCATATACTACTGCCGGCATTGCGACGCAGAGTTTGAGACC TTAATCAGTAAGCGACAGCATGAGCGAATGAAGCATCAGCAGCGATATCC GTGTGATTTGTGCGAAGCCCAGTTGGACACGAAGTACGAGTGGGAAATGC ATCACACCATCTGCCAGGCCAAGCAGGAGGCCTTAGCAATTGTGGAGCAG CAGGAAGCTGGCCAAACCGTTATGACTTCCCGGGTGCCAAGGGCATGCTC GATGCGCTCTCGCTCACGGGCATGCTCCGAAGCCTGGGATAGGTACGACA TGGATGAGGAGGAAGAGGACGAAGAAGATGAAGAGATAGAAAGCGGTGGG GAGGAACTAGAAGAGGGCGAGGAGGATGCCATGTACGCGCGACGTATGAA CTTTACTGGCGACTGGATTGTTAACCACAGCCGCAGCAATAGCAACAGCG CTGGTAATCTCTCCCTTTTGTACGGAGACTACGGAATGGTGGAAACGCAC ATGACCACCGACAAGGAGTATGATCTTTACCTACTGGACCTGCTCAAGAC GCAGGTGCGACTGAAATCATTCACTTGTTTCACGCCTGACTGTGGCTACC AGACGGACACCCTAGTGGCTCTAATGAAGCACGACTACATGGAGCACTGG AAGATGAGCTGGTTTTACTGTCATAAGTGCGGCGATGTGTTCACCAGCAA GGTCTTTTTAGACTACCATATGCATCTCCAGAACCGCGGCCTCTACATCT GCCATAAGTGCCGCGAAGAGTTTGAGTTGCAGCACCAGTTAGATCGGCAT TTCCAGCTGCACAGGAAAGGGATCAATTACCACTGCAATTTCTGCCGATT GGAGTTTCTTAGCGAGGCTAAGCTGCTGGCCCATTGCAAAAAGCTGGGGC ACAGTCCCAACGACGAGCCCCTCATCAGCATTGATCGTTCGCTCTCGATT GTCAACTGCCATGTGCCACGGTCATCGGACTATTCTCGAATAGTCAAGTC GTACGAAGAACGTGAGTTCTATATTCCGCGAATACCGATGCCCTCCACGC AGCCCATGCACTTGCCTCAACATAAACCCTTTCGTTTCGCTATCGGAATA TGTGATTTCGAGGAGCGAAATCCGAACTGCGTTGGATGTCACTGATTACG AACTTGTTGTGAGCTCCATTCTTCGTCTGCAATATATTCGAATAGGTCAT GCTACACGTTACTAGTAGAGTGTAAAGTGCTAATATGCACACTCTTTGGT CGAGCAACGAGGAACTCGACTATTGCGTTCTCTTTGTATAATCAACTCTA GTAAATTTAGATATGCATATTTTTTATAATAAATATTGTGCCGTTGTCAG AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11906-RA | 2306 | CG11906-RA | 1..2305 | 2..2306 | 11510 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 15169946..15170658 | 1130..418 | 3550 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 15168593..15169246 | 2300..1647 | 3225 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 15170726..15171146 | 422..2 | 2060 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 15169544..15169888 | 1472..1128 | 1710 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 15169304..15169483 | 1651..1472 | 855 | 98.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 19282771..19283483 | 1130..418 | 3550 | 99.9 | Minus |
2R | 25286936 | 2R | 19281412..19282071 | 2306..1647 | 3270 | 99.7 | Minus |
2R | 25286936 | 2R | 19283551..19283971 | 422..2 | 2105 | 100 | Minus |
2R | 25286936 | 2R | 19282369..19282713 | 1472..1128 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 19282129..19282308 | 1651..1472 | 900 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 19283970..19284682 | 1130..418 | 3550 | 99.8 | Minus |
2R | 25260384 | 2R | 19282611..19283270 | 2306..1647 | 3270 | 99.6 | Minus |
2R | 25260384 | 2R | 19284750..19285170 | 422..2 | 2105 | 100 | Minus |
2R | 25260384 | 2R | 19283568..19283912 | 1472..1128 | 1725 | 100 | Minus |
2R | 25260384 | 2R | 19283328..19283507 | 1651..1472 | 900 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 15168593..15169242 | 1651..2300 | 96 | <- | Minus |
chr2R | 15169305..15169482 | 1473..1650 | 98 | <- | Minus |
chr2R | 15169544..15169689 | 1327..1472 | 100 | == | Minus |
chr2R | 15169765..15169886 | 1130..1251 | 99 | <- | Minus |
chr2R | 15169947..15170654 | 422..1129 | 100 | <- | Minus |
chr2R | 15170727..15171146 | 1..421 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..1905 | 191..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..1905 | 191..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..1905 | 191..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..1905 | 191..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..1905 | 191..2095 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..2299 | 2..2300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..2299 | 2..2300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..2289 | 12..2300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..2299 | 2..2300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11906-RA | 1..2289 | 12..2300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19281418..19282067 | 1651..2300 | 100 | <- | Minus |
2R | 19282130..19282307 | 1473..1650 | 100 | <- | Minus |
2R | 19282369..19282711 | 1130..1472 | 100 | <- | Minus |
2R | 19282772..19283479 | 422..1129 | 100 | <- | Minus |
2R | 19283552..19283971 | 1..421 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19281418..19282067 | 1651..2300 | 100 | <- | Minus |
2R | 19282130..19282307 | 1473..1650 | 100 | <- | Minus |
2R | 19282369..19282711 | 1130..1472 | 100 | <- | Minus |
2R | 19282772..19283479 | 422..1129 | 100 | <- | Minus |
2R | 19283552..19283971 | 1..421 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19281418..19282067 | 1651..2300 | 100 | <- | Minus |
2R | 19282130..19282307 | 1473..1650 | 100 | <- | Minus |
2R | 19282369..19282711 | 1130..1472 | 100 | <- | Minus |
2R | 19282772..19283479 | 422..1129 | 100 | <- | Minus |
2R | 19283552..19283971 | 1..421 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 15168923..15169572 | 1651..2300 | 100 | <- | Minus |
arm_2R | 15169635..15169812 | 1473..1650 | 100 | <- | Minus |
arm_2R | 15169874..15170216 | 1130..1472 | 100 | <- | Minus |
arm_2R | 15170277..15170984 | 422..1129 | 100 | <- | Minus |
arm_2R | 15171057..15171476 | 1..421 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19282617..19283266 | 1651..2300 | 100 | <- | Minus |
2R | 19283329..19283506 | 1473..1650 | 100 | <- | Minus |
2R | 19283568..19283910 | 1130..1472 | 100 | <- | Minus |
2R | 19283971..19284678 | 422..1129 | 100 | <- | Minus |
2R | 19284751..19285170 | 1..421 | 99 | Minus |
Translation from 190 to 2094
> RE39769.pep MQDATAPDPEPSSTNGNCSVEHDNRQDQDENHVGAEREAEANDANCTVCG AAKASALLDLRSNHVMQRRLSRDWKIHADVIRSTLKAICVECVCKLNMHS EVTRSLMQRMQRLQRSGGETTKVTTTTTSPSQHSPPIADAEVSTTLIESQ EEVAHSGQSVRSRSSCSVLEVYLAQQPYSPSAKETEEKHAEGWKWRTRLE CHECGRAYFRRDYYAQHLRRCSKTRRKQPRPSRVKCRVLNEASYDEEAPS RAIRSSRIYYCRHCDAEFETLISKRQHERMKHQQRYPCDLCEAQLDTKYE WEMHHTICQAKQEALAIVEQQEAGQTVMTSRVPRACSMRSRSRACSEAWD RYDMDEEEEDEEDEEIESGGEELEEGEEDAMYARRMNFTGDWIVNHSRSN SNSAGNLSLLYGDYGMVETHMTTDKEYDLYLLDLLKTQVRLKSFTCFTPD CGYQTDTLVALMKHDYMEHWKMSWFYCHKCGDVFTSKVFLDYHMHLQNRG LYICHKCREEFELQHQLDRHFQLHRKGINYHCNFCRLEFLSEAKLLAHCK KLGHSPNDEPLISIDRSLSIVNCHVPRSSDYSRIVKSYEEREFYIPRIPM PSTQPMHLPQHKPFRFAIGICDFEERNPNCVGCH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13292-PA | 607 | GF13292-PA | 1..607 | 1..634 | 1944 | 63.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20918-PA | 632 | GG20918-PA | 1..632 | 1..634 | 2754 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22696-PA | 617 | GH22696-PA | 1..616 | 1..633 | 1506 | 54.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11906-PA | 634 | CG11906-PA | 1..634 | 1..634 | 3447 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20624-PA | 610 | GI20624-PA | 1..609 | 1..633 | 1674 | 56.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16834-PA | 503 | GL16834-PA | 64..502 | 188..633 | 1412 | 60 | Plus |
Dper\GL16834-PA | 503 | GL16834-PA | 3..80 | 8..92 | 183 | 51.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11272-PB | 630 | GA11272-PB | 3..629 | 8..633 | 1945 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13166-PA | 449 | GM13166-PA | 1..449 | 1..450 | 1935 | 89.4 | Plus |
Dsec\GM19843-PA | 338 | GM19843-PA | 1..310 | 1..337 | 1366 | 84.9 | Plus |
Dsec\GM13167-PA | 163 | GM13167-PA | 1..163 | 472..634 | 871 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25333-PA | 633 | GD25333-PA | 1..633 | 1..634 | 3341 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19664-PA | 626 | GJ19664-PA | 4..625 | 6..633 | 1658 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20945-PA | 629 | GK20945-PA | 1..628 | 1..633 | 1470 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13856-PA | 739 | GE13856-PA | 104..739 | 1..634 | 2790 | 87.7 | Plus |
Translation from 190 to 2094
> RE39769.hyp MQDATAPDPEPSSTNGNCSVEHDNRQDQDENHVGAEREAEANDANCTVCG AAKASALLDLRSNHVMQRRLSRDWKIHADVIRSTLKAICVECVCKLNMHS EVTRSLMQRMQRLQRSGGETTKVTTTTTSPSQHSPPIADAEVSTTLIESQ EEVAHSGQSVRSRSSCSVLEVYLAQQPYSPSAKETEEKHAEGWKWRTRLE CHECGRAYFRRDYYAQHLRRCSKTRRKQPRPSRVKCRVLNEASYDEEAPS RAIRSSRIYYCRHCDAEFETLISKRQHERMKHQQRYPCDLCEAQLDTKYE WEMHHTICQAKQEALAIVEQQEAGQTVMTSRVPRACSMRSRSRACSEAWD RYDMDEEEEDEEDEEIESGGEELEEGEEDAMYARRMNFTGDWIVNHSRSN SNSAGNLSLLYGDYGMVETHMTTDKEYDLYLLDLLKTQVRLKSFTCFTPD CGYQTDTLVALMKHDYMEHWKMSWFYCHKCGDVFTSKVFLDYHMHLQNRG LYICHKCREEFELQHQLDRHFQLHRKGINYHCNFCRLEFLSEAKLLAHCK KLGHSPNDEPLISIDRSLSIVNCHVPRSSDYSRIVKSYEEREFYIPRIPM PSTQPMHLPQHKPFRFAIGICDFEERNPNCVGCH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11906-PA | 634 | CG11906-PA | 1..634 | 1..634 | 3447 | 100 | Plus |