Clone RE39769 Report

Search the DGRC for RE39769

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:397
Well:69
Vector:pFlc-1
Associated Gene/TranscriptCG11906-RA
Protein status:RE39769.pep: gold
Preliminary Size:1949
Sequenced Size:2315

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11906 2002-01-01 Sim4 clustering to Release 2
CG11906 2002-01-03 Blastp of sequenced clone
CG11906 2003-01-01 Sim4 clustering to Release 3
CG11906 2008-04-29 Release 5.5 accounting
CG11906 2008-08-15 Release 5.9 accounting
CG11906 2008-12-18 5.12 accounting

Clone Sequence Records

RE39769.complete Sequence

2315 bp (2315 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075484

> RE39769.complete
TATGACAACAACGGTCACACTGCATTCTGCTCTTCAAAAAATATTTACTA
GATAAAACACTTGGAATTCGGCGGATTTGAGTGTAGTTTTTCGACTCACG
CATCTAATGCGGCACAGTAATGACATAAGGATCAAGTGCAATATATTGAG
TGTGCCATTTGTTATCCAGTAGCGCCCCTATTACAGCAGGATGCAGGATG
CCACGGCTCCGGATCCGGAACCCAGCAGCACCAACGGCAATTGCTCCGTT
GAACATGACAATCGGCAGGATCAGGATGAGAACCACGTAGGCGCCGAGCG
GGAAGCGGAGGCCAACGATGCCAACTGCACCGTTTGTGGTGCCGCCAAGG
CATCGGCGCTTTTGGATCTGCGCTCCAACCATGTAATGCAACGTCGCCTA
AGTCGCGACTGGAAGATTCATGCAGATGTAATCCGATCCACATTGAAGGC
CATTTGCGTGGAGTGCGTGTGCAAGCTGAACATGCACTCGGAGGTCACTC
GATCCCTGATGCAGCGCATGCAACGGCTGCAGCGTTCCGGTGGTGAAACC
ACCAAGGTGACAACCACCACGACATCGCCCAGCCAGCACAGTCCACCCAT
TGCTGATGCAGAGGTGTCGACCACCTTGATTGAGAGTCAGGAGGAGGTGG
CCCACAGCGGGCAGAGCGTTCGCTCGCGTTCTTCCTGCTCCGTGCTGGAA
GTATACCTCGCTCAACAACCATATTCTCCATCGGCCAAGGAAACGGAAGA
GAAGCATGCGGAGGGCTGGAAATGGCGAACACGGCTGGAGTGTCACGAAT
GTGGTCGGGCCTATTTTCGACGGGATTACTACGCCCAGCACTTGAGGCGC
TGCTCCAAAACGCGCAGGAAGCAGCCACGTCCATCGCGCGTCAAATGCCG
GGTACTAAATGAGGCGAGCTATGATGAAGAGGCGCCATCCAGAGCCATCC
GATCATCGCGCATATACTACTGCCGGCATTGCGACGCAGAGTTTGAGACC
TTAATCAGTAAGCGACAGCATGAGCGAATGAAGCATCAGCAGCGATATCC
GTGTGATTTGTGCGAAGCCCAGTTGGACACGAAGTACGAGTGGGAAATGC
ATCACACCATCTGCCAGGCCAAGCAGGAGGCCTTAGCAATTGTGGAGCAG
CAGGAAGCTGGCCAAACCGTTATGACTTCCCGGGTGCCAAGGGCATGCTC
GATGCGCTCTCGCTCACGGGCATGCTCCGAAGCCTGGGATAGGTACGACA
TGGATGAGGAGGAAGAGGACGAAGAAGATGAAGAGATAGAAAGCGGTGGG
GAGGAACTAGAAGAGGGCGAGGAGGATGCCATGTACGCGCGACGTATGAA
CTTTACTGGCGACTGGATTGTTAACCACAGCCGCAGCAATAGCAACAGCG
CTGGTAATCTCTCCCTTTTGTACGGAGACTACGGAATGGTGGAAACGCAC
ATGACCACCGACAAGGAGTATGATCTTTACCTACTGGACCTGCTCAAGAC
GCAGGTGCGACTGAAATCATTCACTTGTTTCACGCCTGACTGTGGCTACC
AGACGGACACCCTAGTGGCTCTAATGAAGCACGACTACATGGAGCACTGG
AAGATGAGCTGGTTTTACTGTCATAAGTGCGGCGATGTGTTCACCAGCAA
GGTCTTTTTAGACTACCATATGCATCTCCAGAACCGCGGCCTCTACATCT
GCCATAAGTGCCGCGAAGAGTTTGAGTTGCAGCACCAGTTAGATCGGCAT
TTCCAGCTGCACAGGAAAGGGATCAATTACCACTGCAATTTCTGCCGATT
GGAGTTTCTTAGCGAGGCTAAGCTGCTGGCCCATTGCAAAAAGCTGGGGC
ACAGTCCCAACGACGAGCCCCTCATCAGCATTGATCGTTCGCTCTCGATT
GTCAACTGCCATGTGCCACGGTCATCGGACTATTCTCGAATAGTCAAGTC
GTACGAAGAACGTGAGTTCTATATTCCGCGAATACCGATGCCCTCCACGC
AGCCCATGCACTTGCCTCAACATAAACCCTTTCGTTTCGCTATCGGAATA
TGTGATTTCGAGGAGCGAAATCCGAACTGCGTTGGATGTCACTGATTACG
AACTTGTTGTGAGCTCCATTCTTCGTCTGCAATATATTCGAATAGGTCAT
GCTACACGTTACTAGTAGAGTGTAAAGTGCTAATATGCACACTCTTTGGT
CGAGCAACGAGGAACTCGACTATTGCGTTCTCTTTGTATAATCAACTCTA
GTAAATTTAGATATGCATATTTTTTATAATAAATATTGTGCCGTTGTCAG
AAAAAAAAAAAAAAA

RE39769.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11906-RA 2306 CG11906-RA 1..2305 2..2306 11510 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15169946..15170658 1130..418 3550 99.9 Minus
chr2R 21145070 chr2R 15168593..15169246 2300..1647 3225 99.5 Minus
chr2R 21145070 chr2R 15170726..15171146 422..2 2060 99.3 Minus
chr2R 21145070 chr2R 15169544..15169888 1472..1128 1710 99.7 Minus
chr2R 21145070 chr2R 15169304..15169483 1651..1472 855 98.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19282771..19283483 1130..418 3550 99.9 Minus
2R 25286936 2R 19281412..19282071 2306..1647 3270 99.7 Minus
2R 25286936 2R 19283551..19283971 422..2 2105 100 Minus
2R 25286936 2R 19282369..19282713 1472..1128 1725 100 Minus
2R 25286936 2R 19282129..19282308 1651..1472 900 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19283970..19284682 1130..418 3550 99.8 Minus
2R 25260384 2R 19282611..19283270 2306..1647 3270 99.6 Minus
2R 25260384 2R 19284750..19285170 422..2 2105 100 Minus
2R 25260384 2R 19283568..19283912 1472..1128 1725 100 Minus
2R 25260384 2R 19283328..19283507 1651..1472 900 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:28:48 has no hits.

RE39769.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:30:02 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15168593..15169242 1651..2300 96 <- Minus
chr2R 15169305..15169482 1473..1650 98 <- Minus
chr2R 15169544..15169689 1327..1472 100 == Minus
chr2R 15169765..15169886 1130..1251 99 <- Minus
chr2R 15169947..15170654 422..1129 100 <- Minus
chr2R 15170727..15171146 1..421 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:14:42 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..1905 191..2095 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:42 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..1905 191..2095 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:02:38 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..1905 191..2095 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:34 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..1905 191..2095 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:09 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..1905 191..2095 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:36 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..2299 2..2300 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:41 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..2299 2..2300 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:38 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..2289 12..2300 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:34 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..2299 2..2300 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:09 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
CG11906-RA 1..2289 12..2300 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:02 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19281418..19282067 1651..2300 100 <- Minus
2R 19282130..19282307 1473..1650 100 <- Minus
2R 19282369..19282711 1130..1472 100 <- Minus
2R 19282772..19283479 422..1129 100 <- Minus
2R 19283552..19283971 1..421 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:02 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19281418..19282067 1651..2300 100 <- Minus
2R 19282130..19282307 1473..1650 100 <- Minus
2R 19282369..19282711 1130..1472 100 <- Minus
2R 19282772..19283479 422..1129 100 <- Minus
2R 19283552..19283971 1..421 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:02 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19281418..19282067 1651..2300 100 <- Minus
2R 19282130..19282307 1473..1650 100 <- Minus
2R 19282369..19282711 1130..1472 100 <- Minus
2R 19282772..19283479 422..1129 100 <- Minus
2R 19283552..19283971 1..421 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:38 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15168923..15169572 1651..2300 100 <- Minus
arm_2R 15169635..15169812 1473..1650 100 <- Minus
arm_2R 15169874..15170216 1130..1472 100 <- Minus
arm_2R 15170277..15170984 422..1129 100 <- Minus
arm_2R 15171057..15171476 1..421 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:55:09 Download gff for RE39769.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19282617..19283266 1651..2300 100 <- Minus
2R 19283329..19283506 1473..1650 100 <- Minus
2R 19283568..19283910 1130..1472 100 <- Minus
2R 19283971..19284678 422..1129 100 <- Minus
2R 19284751..19285170 1..421 99   Minus

RE39769.pep Sequence

Translation from 190 to 2094

> RE39769.pep
MQDATAPDPEPSSTNGNCSVEHDNRQDQDENHVGAEREAEANDANCTVCG
AAKASALLDLRSNHVMQRRLSRDWKIHADVIRSTLKAICVECVCKLNMHS
EVTRSLMQRMQRLQRSGGETTKVTTTTTSPSQHSPPIADAEVSTTLIESQ
EEVAHSGQSVRSRSSCSVLEVYLAQQPYSPSAKETEEKHAEGWKWRTRLE
CHECGRAYFRRDYYAQHLRRCSKTRRKQPRPSRVKCRVLNEASYDEEAPS
RAIRSSRIYYCRHCDAEFETLISKRQHERMKHQQRYPCDLCEAQLDTKYE
WEMHHTICQAKQEALAIVEQQEAGQTVMTSRVPRACSMRSRSRACSEAWD
RYDMDEEEEDEEDEEIESGGEELEEGEEDAMYARRMNFTGDWIVNHSRSN
SNSAGNLSLLYGDYGMVETHMTTDKEYDLYLLDLLKTQVRLKSFTCFTPD
CGYQTDTLVALMKHDYMEHWKMSWFYCHKCGDVFTSKVFLDYHMHLQNRG
LYICHKCREEFELQHQLDRHFQLHRKGINYHCNFCRLEFLSEAKLLAHCK
KLGHSPNDEPLISIDRSLSIVNCHVPRSSDYSRIVKSYEEREFYIPRIPM
PSTQPMHLPQHKPFRFAIGICDFEERNPNCVGCH*

RE39769.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13292-PA 607 GF13292-PA 1..607 1..634 1944 63.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20918-PA 632 GG20918-PA 1..632 1..634 2754 87.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22696-PA 617 GH22696-PA 1..616 1..633 1506 54.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11906-PA 634 CG11906-PA 1..634 1..634 3447 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20624-PA 610 GI20624-PA 1..609 1..633 1674 56.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16834-PA 503 GL16834-PA 64..502 188..633 1412 60 Plus
Dper\GL16834-PA 503 GL16834-PA 3..80 8..92 183 51.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11272-PB 630 GA11272-PB 3..629 8..633 1945 63.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13166-PA 449 GM13166-PA 1..449 1..450 1935 89.4 Plus
Dsec\GM19843-PA 338 GM19843-PA 1..310 1..337 1366 84.9 Plus
Dsec\GM13167-PA 163 GM13167-PA 1..163 472..634 871 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25333-PA 633 GD25333-PA 1..633 1..634 3341 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19664-PA 626 GJ19664-PA 4..625 6..633 1658 56.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20945-PA 629 GK20945-PA 1..628 1..633 1470 53.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13856-PA 739 GE13856-PA 104..739 1..634 2790 87.7 Plus

RE39769.hyp Sequence

Translation from 190 to 2094

> RE39769.hyp
MQDATAPDPEPSSTNGNCSVEHDNRQDQDENHVGAEREAEANDANCTVCG
AAKASALLDLRSNHVMQRRLSRDWKIHADVIRSTLKAICVECVCKLNMHS
EVTRSLMQRMQRLQRSGGETTKVTTTTTSPSQHSPPIADAEVSTTLIESQ
EEVAHSGQSVRSRSSCSVLEVYLAQQPYSPSAKETEEKHAEGWKWRTRLE
CHECGRAYFRRDYYAQHLRRCSKTRRKQPRPSRVKCRVLNEASYDEEAPS
RAIRSSRIYYCRHCDAEFETLISKRQHERMKHQQRYPCDLCEAQLDTKYE
WEMHHTICQAKQEALAIVEQQEAGQTVMTSRVPRACSMRSRSRACSEAWD
RYDMDEEEEDEEDEEIESGGEELEEGEEDAMYARRMNFTGDWIVNHSRSN
SNSAGNLSLLYGDYGMVETHMTTDKEYDLYLLDLLKTQVRLKSFTCFTPD
CGYQTDTLVALMKHDYMEHWKMSWFYCHKCGDVFTSKVFLDYHMHLQNRG
LYICHKCREEFELQHQLDRHFQLHRKGINYHCNFCRLEFLSEAKLLAHCK
KLGHSPNDEPLISIDRSLSIVNCHVPRSSDYSRIVKSYEEREFYIPRIPM
PSTQPMHLPQHKPFRFAIGICDFEERNPNCVGCH*

RE39769.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11906-PA 634 CG11906-PA 1..634 1..634 3447 100 Plus