Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE39877.complete Sequence
2779 bp (2779 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071365
> RE39877.complete
AGTTAGAATTTAGCAGCGAACGCGATGTGATCGAAGCGGAACTGAACTAC
AGCCTTCTTATCCTGATATTACGGAGCCTTCGTCGCTGGATCGCACCAAG
GACCCGGCCAGAAAATTGCATTTAGCTCGTGCTTAACTAGAGGCCCACTA
ACCAAATTAGTCGATAAGAAATGCTTTAGTAATACTAGCTGTAATACCAT
ATTTGTATGTAGTTTGGCTCTTAGTTGATCTATGTTATGCTCGTGCTTAT
TATTATTATTATCTAATTCGTACATTAAATAAAATGCTTTGAGTTTTGCA
ATTTTAATTTACGCTTTTTAATATTTGAGCTAAATGAGAAGGAGTAGCAG
CTATTGGATCGAATCATCAGTATGTTTCTTAACAGGGTACGCCCGGTTCC
AATGGATATCCTGAAAAATGAACACAAGCGCACACGCACACACCCACATA
CACGCAAGCTGGCGAATAGCCAGGGCGATAAAGGTTAGAGGGAAGCACTT
CAGCTGGAGAGTGAGCCTGGTCGAGATCCTGATCCTGGGATGCCAATGGG
ACTGGGACAGATAGCCACAGAGGAAAAAAGCGCCAACCCAAAAACCATGA
ATATGCGATTGTTGTCCGACGATGTTCGTAGATGTCAGCCATAAGATATT
TCCATAGACACGCAGGCAGCGAAGGAGCAGGAGGAGCAGGACACCCGTAT
AGCAGCAACCACGATTGAGTTGCTAGCTTCGTCAGACACCAGGCCAGACT
TCGAGGGGGATGAGGACCTAAAGGATACTGGCTCAGGATACTCGAAAGTA
GGCTGTTACTGCACAAGGGTATCTCAAGAAAAAAAAAAAACATGAAAGTA
TATGCAAACTTACTGACGGAGCACGATTTAAAATATCACTCAATCGAAAC
TTATTTTCAGATAAGCTTAAAAATAAATGGGATCAACTACATAAATTCAT
ATTTTAAAAGAAATGTTTAGTTTCTAATATCATATTCACTTAATTTAAAA
ATCTATTTTCAACAATGTGTAGTTACCAAGAATTTTTACTTTCTTATTTC
ACTTCATCAGTATAAGTTTTAGAGGTTTGTTAAATGTTGTTCTTAGGCAG
CTTCATTGCGTTTTGCTACAGTATTAAATCTTGTTTGGATGACCTTATGT
ATCACCCTAGCGATTTCGATTTGCACCCTTCTCGCTCCAGTCGTCGTATC
GAAGTAACTGCCTACTTCCTCGATGTCCTCGAATGCCTCCAGCTGGGCTG
GCCCCTCGTCCTTCGCTTCATATCCTGTCAGGAGCTGACTTTTTCCTGTT
GCCGCTGCTTCCTTCCTTCCTTTCTTCTGGCTCTTATCTTCGTTTAACTT
TCTACCATGTTATGGCCCGTTATCTGTCTGCCCGTGTACGTGTCCTTCGT
GTCGGTGTGTGTTCGGTTTCTATGTGTGTGTGTGTGTGTGTGTGTGCCTC
CTCGTCTCTGTTTGCATTTTTGAGCAAATCAAGTGAAATTACATTTTTCT
ATGCGATGCTCTTAATGTTATTTGCATACGTATCCTGCAGGCTACAATAT
TTACAAATGAATGCAGTCCGGTGCCGTTCGCTTGGTCCTTGGTCCTCGGT
CCTTGGGGGCTTGGTCCTTTGGAGAATCAGACAAGCGGCTGTTGAACCAA
CCACCTTAACTGCCCAACTTCCCAGCAGACCAACCGCCCAGCCGAACTAA
CTACGTTTGCGAAAATTCTTTCATATCCTTTTCAACCATCGTTACGTGCC
CTCAAAGTGCCATTTTGTCACTGGGTCCTTTTTCTGCTACTTCCACTTCT
TCTCGCACTCATTCCGCCAGCTGTCATTTGCATTTGCCTTTCCTCCTTCC
CACTAACTGGCATTAATATTTGTTTTCGTTTGATAATTTTCTTTTGCTGC
CTTTTATACTTTTAAGTGCACGTCCTGCCATTTCCAGGACCCTTTCTCCC
CATCTCAGCTATTTTTCCAACTAGTTTCTATCTGCGTCTCTGTCGCTCGC
CTCCTTGCCTTGGCCTCATCTTATTGGACTGCATAGTAAGTGGCAGCAGC
CAAGTGAAAAAAGGACGACAAGGACGATGAAGAAGAGGAATGCCGACGAA
AAAAAAACCAAGCCACATTTAAATGTGCTCCGCCCCTTTTCTATTTTAAA
AATGCAAAGCATTTGCTTGGCTTTGCTTTGCTTTGGCCTGCCTCCTGCTT
CTGCTCCTGCTTCTTGCCCAGGACCTTCTCTCTTCTTCTTCGCGGTTTCG
TCCTGCTGCTGGCTCTTTCTTTTAATTTATTTTATATCGCTGCCTCCTTT
TTCTGCGCGACGACGAATGCGAAGCCAAAACCGAACGCTTTTGCAAAAAA
GATGGAAACGAAGGACTTGGCTTGAGGTCGCCTTGACTCGCCTTCACCAA
TAAGATTTTCGCTAGGTAACATTTGAAAAAAGGATATCGTGAAATGGTCG
GGCTATATAACAGGAGGAGGGAGGTCAACGGGTACTTTTAATTAATTGTT
GCTAAGCAATTTTATGAAATTCAATCAGAGTTTTGACTGGGAGTACCTCC
CCAAAAGTAAGATATTATAAAATCGGTTTCTTCACAATAAAGTAATAAAG
TAAAAAAAATGACAAAAATTAAGCAAATAAAATGAATATATAAAATATTG
ATACAAACTTTGTAAACTTAACTAGTTTTATTCATAATTCTTATTTATAA
TTTCATTTGGTTAAGGCTTATTCATAAATTATTTGTGTTAAAAATTAAAT
CTGATTAATTCAATAAAAAAAAAAAAAAA
RE39877.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31386-RA | 2845 | CG31386-RA | 71..2835 | 1..2766 | 13745 | 99.8 | Plus |
CG31386.a | 2647 | CG31386.a | 257..2637 | 385..2766 | 11840 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 7094952..7097117 | 2764..598 | 10635 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 7112775..7113072 | 386..89 | 1490 | 100 | Minus |
chr3R | 27901430 | chr3R | 7103141..7103354 | 597..384 | 1040 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 7131032..7131096 | 65..1 | 295 | 96.9 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11269413..11271580 | 2766..598 | 10765 | 99.9 | Minus |
3R | 32079331 | 3R | 11287251..11287548 | 386..89 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 11277630..11277843 | 597..384 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 11305544..11305608 | 65..1 | 310 | 98.5 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 11010244..11012411 | 2766..598 | 10775 | 99.8 | Minus |
3R | 31820162 | 3R | 11028082..11028379 | 386..89 | 1490 | 100 | Minus |
3R | 31820162 | 3R | 11018461..11018674 | 597..384 | 1070 | 100 | Minus |
3R | 31820162 | 3R | 11046375..11046439 | 65..1 | 310 | 98.4 | Minus |
Blast to na_te.dros performed 2019-03-15 14:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1058..1228 | 149..325 | 156 | 61.9 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 7102..7233 | 2759..2630 | 149 | 60.9 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1064..1143 | 248..325 | 134 | 65 | Plus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1010..1190 | 996..829 | 127 | 57.7 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1058..1216 | 165..325 | 123 | 57.9 | Plus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 4054..4125 | 1010..942 | 118 | 66.7 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7..154 | 275..121 | 118 | 56.8 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7045..7192 | 275..121 | 118 | 56.8 | Minus |
opus | 7521 | opus OPUS 7521bp | 6127..6246 | 1136..1015 | 117 | 60.5 | Minus |
RE39877.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:14:26 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 7094952..7097117 | 598..2764 | 99 | <- | Minus |
chr3R | 7103141..7103352 | 386..597 | 99 | <- | Minus |
chr3R | 7112776..7113072 | 89..385 | 100 | == | Minus |
chr3R | 7131032..7131096 | 1..65 | 96 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:24:02 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-RA | 1..468 | 1233..1700 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:36 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-RA | 1..468 | 1233..1700 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:34 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-RA | 1..468 | 1233..1700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:24:01 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-RA | 1..2763 | 1..2764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:36 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-RA | 1..2763 | 1..2764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:34 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-RA | 1..2763 | 1..2764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:26 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11269415..11271580 | 598..2764 | 99 | <- | Minus |
3R | 11277630..11277841 | 386..597 | 100 | <- | Minus |
3R | 11287252..11287548 | 89..385 | 100 | == | Minus |
3R | 11305544..11305608 | 1..65 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:26 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11269415..11271580 | 598..2764 | 99 | <- | Minus |
3R | 11277630..11277841 | 386..597 | 100 | <- | Minus |
3R | 11287252..11287548 | 89..385 | 100 | == | Minus |
3R | 11305544..11305608 | 1..65 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:26 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11269415..11271580 | 598..2764 | 99 | <- | Minus |
3R | 11277630..11277841 | 386..597 | 100 | <- | Minus |
3R | 11287252..11287548 | 89..385 | 100 | == | Minus |
3R | 11305544..11305608 | 1..65 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:24:02 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7131266..7131330 | 1..65 | 98 | | Minus |
arm_3R | 7112974..7113270 | 89..385 | 100 | == | Minus |
arm_3R | 7095137..7097302 | 598..2764 | 99 | <- | Minus |
arm_3R | 7103352..7103563 | 386..597 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:24:02 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7131266..7131330 | 1..65 | 98 | | Minus |
arm_3R | 7112974..7113270 | 89..385 | 100 | == | Minus |
arm_3R | 7095137..7097302 | 598..2764 | 99 | <- | Minus |
arm_3R | 7103352..7103563 | 386..597 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:24:02 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7131266..7131330 | 1..65 | 98 | | Minus |
arm_3R | 7112974..7113270 | 89..385 | 100 | == | Minus |
arm_3R | 7095137..7097302 | 598..2764 | 99 | <- | Minus |
arm_3R | 7103352..7103563 | 386..597 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:42 Download gff for
RE39877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11018461..11018672 | 386..597 | 100 | <- | Minus |
3R | 11028083..11028379 | 89..385 | 100 | == | Minus |
3R | 11046375..11046439 | 1..65 | 98 | | Minus |
3R | 11010246..11012411 | 598..2764 | 99 | <- | Minus |
RE39877.hyp Sequence
Translation from 1209 to 1676
> RE39877.hyp
MPPAGLAPRPSLHILSGADFFLLPLLPSFLSSGSYLRLTFYHVMARYLSA
RVRVLRVGVCSVSMCVCVCVCASSSLFAFLSKSSEITFFYAMLLMLFAYV
SCRLQYLQMNAVRCRSLGPWSSVLGGLVLWRIRQAAVEPTTLTAQLPSRP
TAQPN*
Sequence RE39877.hyp has no blast hits.
RE39877.pep Sequence
Translation from 1232 to 1699
> RE39877.pep
MPPAGLAPRPSLHILSGADFFLLPLLPSFLSSGSYLRLTFYHVMARYLSA
RVRVLRVGVCSVSMCVCVCVCASSSLFAFLSKSSEITFFYAMLLMLFAYV
SCRLQYLQMNAVRCRSLGPWSSVLGGLVLWRIRQAAVEPTTLTAQLPSRP
TAQPN*
RE39877.pep Blast Records
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI16932-PA | 117 | GI16932-PA | 37..106 | 34..110 | 188 | 61 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19408-PA | 139 | GM19408-PA | 1..130 | 1..135 | 527 | 91.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20667-PA | 155 | GD20667-PA | 1..155 | 1..155 | 756 | 97.4 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ17102-PA | 129 | GJ17102-PA | 85..123 | 82..120 | 142 | 74.4 | Plus |