Clone RE39877 Report

Search the DGRC for RE39877

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:398
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG31386-RA
Protein status:RE39877.pep:
Sequenced Size:2779

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31386 2001-12-14 Blastp of sequenced clone
CG17734 2002-01-01 Sim4 clustering to Release 2
CG31386 2003-01-01 Sim4 clustering to Release 3
CG31386 2008-04-29 Release 5.5 accounting
CG31386 2008-08-15 Release 5.9 accounting
CG31386 2008-12-18 5.12 accounting

Clone Sequence Records

RE39877.complete Sequence

2779 bp (2779 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071365

> RE39877.complete
AGTTAGAATTTAGCAGCGAACGCGATGTGATCGAAGCGGAACTGAACTAC
AGCCTTCTTATCCTGATATTACGGAGCCTTCGTCGCTGGATCGCACCAAG
GACCCGGCCAGAAAATTGCATTTAGCTCGTGCTTAACTAGAGGCCCACTA
ACCAAATTAGTCGATAAGAAATGCTTTAGTAATACTAGCTGTAATACCAT
ATTTGTATGTAGTTTGGCTCTTAGTTGATCTATGTTATGCTCGTGCTTAT
TATTATTATTATCTAATTCGTACATTAAATAAAATGCTTTGAGTTTTGCA
ATTTTAATTTACGCTTTTTAATATTTGAGCTAAATGAGAAGGAGTAGCAG
CTATTGGATCGAATCATCAGTATGTTTCTTAACAGGGTACGCCCGGTTCC
AATGGATATCCTGAAAAATGAACACAAGCGCACACGCACACACCCACATA
CACGCAAGCTGGCGAATAGCCAGGGCGATAAAGGTTAGAGGGAAGCACTT
CAGCTGGAGAGTGAGCCTGGTCGAGATCCTGATCCTGGGATGCCAATGGG
ACTGGGACAGATAGCCACAGAGGAAAAAAGCGCCAACCCAAAAACCATGA
ATATGCGATTGTTGTCCGACGATGTTCGTAGATGTCAGCCATAAGATATT
TCCATAGACACGCAGGCAGCGAAGGAGCAGGAGGAGCAGGACACCCGTAT
AGCAGCAACCACGATTGAGTTGCTAGCTTCGTCAGACACCAGGCCAGACT
TCGAGGGGGATGAGGACCTAAAGGATACTGGCTCAGGATACTCGAAAGTA
GGCTGTTACTGCACAAGGGTATCTCAAGAAAAAAAAAAAACATGAAAGTA
TATGCAAACTTACTGACGGAGCACGATTTAAAATATCACTCAATCGAAAC
TTATTTTCAGATAAGCTTAAAAATAAATGGGATCAACTACATAAATTCAT
ATTTTAAAAGAAATGTTTAGTTTCTAATATCATATTCACTTAATTTAAAA
ATCTATTTTCAACAATGTGTAGTTACCAAGAATTTTTACTTTCTTATTTC
ACTTCATCAGTATAAGTTTTAGAGGTTTGTTAAATGTTGTTCTTAGGCAG
CTTCATTGCGTTTTGCTACAGTATTAAATCTTGTTTGGATGACCTTATGT
ATCACCCTAGCGATTTCGATTTGCACCCTTCTCGCTCCAGTCGTCGTATC
GAAGTAACTGCCTACTTCCTCGATGTCCTCGAATGCCTCCAGCTGGGCTG
GCCCCTCGTCCTTCGCTTCATATCCTGTCAGGAGCTGACTTTTTCCTGTT
GCCGCTGCTTCCTTCCTTCCTTTCTTCTGGCTCTTATCTTCGTTTAACTT
TCTACCATGTTATGGCCCGTTATCTGTCTGCCCGTGTACGTGTCCTTCGT
GTCGGTGTGTGTTCGGTTTCTATGTGTGTGTGTGTGTGTGTGTGTGCCTC
CTCGTCTCTGTTTGCATTTTTGAGCAAATCAAGTGAAATTACATTTTTCT
ATGCGATGCTCTTAATGTTATTTGCATACGTATCCTGCAGGCTACAATAT
TTACAAATGAATGCAGTCCGGTGCCGTTCGCTTGGTCCTTGGTCCTCGGT
CCTTGGGGGCTTGGTCCTTTGGAGAATCAGACAAGCGGCTGTTGAACCAA
CCACCTTAACTGCCCAACTTCCCAGCAGACCAACCGCCCAGCCGAACTAA
CTACGTTTGCGAAAATTCTTTCATATCCTTTTCAACCATCGTTACGTGCC
CTCAAAGTGCCATTTTGTCACTGGGTCCTTTTTCTGCTACTTCCACTTCT
TCTCGCACTCATTCCGCCAGCTGTCATTTGCATTTGCCTTTCCTCCTTCC
CACTAACTGGCATTAATATTTGTTTTCGTTTGATAATTTTCTTTTGCTGC
CTTTTATACTTTTAAGTGCACGTCCTGCCATTTCCAGGACCCTTTCTCCC
CATCTCAGCTATTTTTCCAACTAGTTTCTATCTGCGTCTCTGTCGCTCGC
CTCCTTGCCTTGGCCTCATCTTATTGGACTGCATAGTAAGTGGCAGCAGC
CAAGTGAAAAAAGGACGACAAGGACGATGAAGAAGAGGAATGCCGACGAA
AAAAAAACCAAGCCACATTTAAATGTGCTCCGCCCCTTTTCTATTTTAAA
AATGCAAAGCATTTGCTTGGCTTTGCTTTGCTTTGGCCTGCCTCCTGCTT
CTGCTCCTGCTTCTTGCCCAGGACCTTCTCTCTTCTTCTTCGCGGTTTCG
TCCTGCTGCTGGCTCTTTCTTTTAATTTATTTTATATCGCTGCCTCCTTT
TTCTGCGCGACGACGAATGCGAAGCCAAAACCGAACGCTTTTGCAAAAAA
GATGGAAACGAAGGACTTGGCTTGAGGTCGCCTTGACTCGCCTTCACCAA
TAAGATTTTCGCTAGGTAACATTTGAAAAAAGGATATCGTGAAATGGTCG
GGCTATATAACAGGAGGAGGGAGGTCAACGGGTACTTTTAATTAATTGTT
GCTAAGCAATTTTATGAAATTCAATCAGAGTTTTGACTGGGAGTACCTCC
CCAAAAGTAAGATATTATAAAATCGGTTTCTTCACAATAAAGTAATAAAG
TAAAAAAAATGACAAAAATTAAGCAAATAAAATGAATATATAAAATATTG
ATACAAACTTTGTAAACTTAACTAGTTTTATTCATAATTCTTATTTATAA
TTTCATTTGGTTAAGGCTTATTCATAAATTATTTGTGTTAAAAATTAAAT
CTGATTAATTCAATAAAAAAAAAAAAAAA

RE39877.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31386-RA 2845 CG31386-RA 71..2835 1..2766 13745 99.8 Plus
CG31386.a 2647 CG31386.a 257..2637 385..2766 11840 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7094952..7097117 2764..598 10635 99.5 Minus
chr3R 27901430 chr3R 7112775..7113072 386..89 1490 100 Minus
chr3R 27901430 chr3R 7103141..7103354 597..384 1040 99.1 Minus
chr3R 27901430 chr3R 7131032..7131096 65..1 295 96.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11269413..11271580 2766..598 10765 99.9 Minus
3R 32079331 3R 11287251..11287548 386..89 1490 100 Minus
3R 32079331 3R 11277630..11277843 597..384 1070 100 Minus
3R 32079331 3R 11305544..11305608 65..1 310 98.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11010244..11012411 2766..598 10775 99.8 Minus
3R 31820162 3R 11028082..11028379 386..89 1490 100 Minus
3R 31820162 3R 11018461..11018674 597..384 1070 100 Minus
3R 31820162 3R 11046375..11046439 65..1 310 98.4 Minus
Blast to na_te.dros performed 2019-03-15 14:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1058..1228 149..325 156 61.9 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 7102..7233 2759..2630 149 60.9 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1064..1143 248..325 134 65 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1010..1190 996..829 127 57.7 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1058..1216 165..325 123 57.9 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 4054..4125 1010..942 118 66.7 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7..154 275..121 118 56.8 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7045..7192 275..121 118 56.8 Minus
opus 7521 opus OPUS 7521bp 6127..6246 1136..1015 117 60.5 Minus

RE39877.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:14:26 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7094952..7097117 598..2764 99 <- Minus
chr3R 7103141..7103352 386..597 99 <- Minus
chr3R 7112776..7113072 89..385 100 == Minus
chr3R 7131032..7131096 1..65 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:24:02 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
CG31386-RA 1..468 1233..1700 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:36 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
CG31386-RA 1..468 1233..1700 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:34 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
CG31386-RA 1..468 1233..1700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:24:01 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
CG31386-RA 1..2763 1..2764 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:36 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
CG31386-RA 1..2763 1..2764 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:34 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
CG31386-RA 1..2763 1..2764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:26 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11269415..11271580 598..2764 99 <- Minus
3R 11277630..11277841 386..597 100 <- Minus
3R 11287252..11287548 89..385 100 == Minus
3R 11305544..11305608 1..65 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:26 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11269415..11271580 598..2764 99 <- Minus
3R 11277630..11277841 386..597 100 <- Minus
3R 11287252..11287548 89..385 100 == Minus
3R 11305544..11305608 1..65 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:26 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11269415..11271580 598..2764 99 <- Minus
3R 11277630..11277841 386..597 100 <- Minus
3R 11287252..11287548 89..385 100 == Minus
3R 11305544..11305608 1..65 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:24:02 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7131266..7131330 1..65 98   Minus
arm_3R 7112974..7113270 89..385 100 == Minus
arm_3R 7095137..7097302 598..2764 99 <- Minus
arm_3R 7103352..7103563 386..597 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:24:02 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7131266..7131330 1..65 98   Minus
arm_3R 7112974..7113270 89..385 100 == Minus
arm_3R 7095137..7097302 598..2764 99 <- Minus
arm_3R 7103352..7103563 386..597 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:24:02 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7131266..7131330 1..65 98   Minus
arm_3R 7112974..7113270 89..385 100 == Minus
arm_3R 7095137..7097302 598..2764 99 <- Minus
arm_3R 7103352..7103563 386..597 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:42 Download gff for RE39877.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11018461..11018672 386..597 100 <- Minus
3R 11028083..11028379 89..385 100 == Minus
3R 11046375..11046439 1..65 98   Minus
3R 11010246..11012411 598..2764 99 <- Minus

RE39877.hyp Sequence

Translation from 1209 to 1676

> RE39877.hyp
MPPAGLAPRPSLHILSGADFFLLPLLPSFLSSGSYLRLTFYHVMARYLSA
RVRVLRVGVCSVSMCVCVCVCASSSLFAFLSKSSEITFFYAMLLMLFAYV
SCRLQYLQMNAVRCRSLGPWSSVLGGLVLWRIRQAAVEPTTLTAQLPSRP
TAQPN*
Sequence RE39877.hyp has no blast hits.

RE39877.pep Sequence

Translation from 1232 to 1699

> RE39877.pep
MPPAGLAPRPSLHILSGADFFLLPLLPSFLSSGSYLRLTFYHVMARYLSA
RVRVLRVGVCSVSMCVCVCVCASSSLFAFLSKSSEITFFYAMLLMLFAYV
SCRLQYLQMNAVRCRSLGPWSSVLGGLVLWRIRQAAVEPTTLTAQLPSRP
TAQPN*

RE39877.pep Blast Records

Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16932-PA 117 GI16932-PA 37..106 34..110 188 61 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19408-PA 139 GM19408-PA 1..130 1..135 527 91.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20667-PA 155 GD20667-PA 1..155 1..155 756 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17102-PA 129 GJ17102-PA 85..123 82..120 142 74.4 Plus