BDGP Sequence Production Resources |
Search the DGRC for RE40017
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 400 |
Well: | 17 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG33523-RB |
Protein status: | RE40017.pep: validated not full length |
Sequenced Size: | 2396 |
Gene | Date | Evidence |
---|---|---|
CG33523 | 2002-10-19 | Blastp of sequenced clone |
CG10977 | 2003-01-01 | Sim4 clustering to Release 3 |
CG33523 | 2008-04-29 | Release 5.5 accounting |
CG33523 | 2008-08-15 | Release 5.9 accounting |
CG33523 | 2008-12-18 | 5.12 accounting |
2396 bp (2396 high quality bases) assembled on 2002-10-19
GenBank Submission: BT001638
> RE40017.complete AGTCTTGCCACAAGCTTGGTAGCGAACGAGTGCGAAAACTAACTGGCAGC ATGGGCGTCAAGGTCAAGGAAACGACACCCCAGCAAATCGAGGAGCTGCG CGATAGGTTCAATCGCAAATATGCCTCATCCCCTCCGGAGCACCTTTCCA TCCGACCGATATTGATCGTATTCGCAACGATCATCTGTGGCTTCAAAGGT TTCTGGAAATGTATGATCTCGACATGGAGACCTCCTTTAATTCGCTGTGG GAAACCTGTATCTTGCGTCAGTCAACTGGGGCAAACGATATCGATGAGAG CGAGTTGAACCAGGAGTATTTGAAGGAGGGATCCGTGTTTGTGCACAACA CTGATGTGGATGGCAAGCCGTTGTTGGTATTCCGCGTTAAGATGCACAGT AAGTCCAAGAACCTGGACGAACTGATACGCATCGTGGTGTACTGGGTGGA AAGGACTCAGAGGGAGCAGCATCTGACCCAGTTGACCATATTCTTCGACA TGTCGGGCACGAGTTTGGCCTCCATGGATCTGGAGTTTGTGAAACGCATT GTGGAGACATTTAAGCAGTTCTATCCCAATAGCTTGAACTACATTTTGGT ATATGAACTGGGCTGGGTACTAAATGCTGCTTTTAAGGTCATCAAGGCGG TGCTGCCACCCAAAGCGGTTGAGATTTTAAAAATGATATCGAAAAAGGAC ATCAACCAGTACATTAACAAGGATAACTGCCTGGCCATCTGGGGTGGCGA GGATAACTACGAATTTAGCTTTGTGCCGGAGGCTAAAAAGGTCATTTCCA AACCGGTGGCTGCCAATGCTGGCGATGATGACCAATTCGCGGACAAAAAG GTCACCTTTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAA CAAGATGCACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATT TTGTCAACTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCT ATTGCCACCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAA GTTCCGTGTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCA CCATCAACATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAG GATAAGTTCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGG CGCCGATGTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATG TGGAGCAGCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCG CAGCTAGATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAA GAAGTCCGGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGG CATTCACCCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTG TTTGCCGGCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGC TACCTGTCCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAATAATATT TACTTAGCCCGTGCAATTTGACCAGGCAGGAGCTAGACATTGCCGCTCGC GATAGCCACAACAATAACGAAGACGACTGCGACTGTCCAGAGCTGGAGAA CTGTGCCTGTGCTGTTGATTTGATGAATCTAGGTCTGGACTGTGCCGATA CGATGGACCAATACGATGGCGAATGCCTCGAGGCACTGATACAGGCGCAT CTGCAGCTGTGCCTCAGCTGTCAGGGCACTGGTGATTGGCAGCTGGGCGG CGTTGCTGCCGGCGGCCATTTGCTGGGATTCATCGCATTCGCAAGGAAGA TGGTGCGCGTCGTTCTTTCGCTATCGCTGCTGTGCGGCATCTTGTTCGTG AGCTTCTACCTGGGAAGCAACTACGGCGGAAACTCCACCACCACTACCAT AACCACCTCCCTAGCCACAGTCGACTCAGGCAGAGGCAATCGTCAGCCGT GTTACTACTCGTAGTGAAGCCAAAACCCTCAACTGTGCATGCCAGGGTGG TTCGATTTGTTCAGCAGTAAATGCAACTTGTTCACCTCTGTACACGTAAT AATCCATTTTGACCCTTGCCAGGTATGAAAACTACAAATATTAAAGCCTT CTTACATACTTCAATGGCTTGCATTCATGAATTCCCGGGTCCTGCGAATT GTTTAGACACCTTTGCTTTTAAAGGTAATTTTAAGATGTTTCCCTTCATT GCAAATCGAACCACCCTCCAAGCAAATACATATTTTTGTATAAATCTTAA GACCTACCATAAGAGTAACAATTTCGTGTTTCCTGATATTATTGAGTAAA TGATGTCTCGCGCTTACGAGACAATCTCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33523.g | 2671 | CG33523.g | 152..2534 | 1..2382 | 11875 | 99.9 | Plus |
CG33523-RD | 3071 | CG33523-RD | 427..2809 | 1..2382 | 11875 | 99.9 | Plus |
CG33523.f | 2448 | CG33523.f | 68..2311 | 139..2382 | 11220 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 5921700..5922716 | 1364..2380 | 4950 | 99.1 | Plus |
chr3L | 24539361 | chr3L | 5917419..5917906 | 139..626 | 2410 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 5921298..5921636 | 1026..1364 | 1680 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 5917984..5918210 | 626..852 | 1090 | 98.7 | Plus |
chr3L | 24539361 | chr3L | 5916629..5916766 | 1..138 | 675 | 99.3 | Plus |
chr3L | 24539361 | chr3L | 5921132..5921236 | 923..1027 | 525 | 100 | Plus |
chr3L | 24539361 | chr3L | 5920818..5920893 | 849..924 | 380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 5929104..5930122 | 1364..2382 | 5095 | 100 | Plus |
3L | 28110227 | 3L | 5924835..5925322 | 139..626 | 2440 | 100 | Plus |
3L | 28110227 | 3L | 5928702..5929040 | 1026..1364 | 1695 | 100 | Plus |
3L | 28110227 | 3L | 5925400..5925626 | 626..852 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 5924055..5924192 | 1..138 | 690 | 100 | Plus |
3L | 28110227 | 3L | 5928536..5928640 | 923..1027 | 525 | 100 | Plus |
3L | 28110227 | 3L | 5928222..5928297 | 849..924 | 380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 5922204..5923222 | 1364..2382 | 5095 | 100 | Plus |
3L | 28103327 | 3L | 5917935..5918422 | 139..626 | 2440 | 100 | Plus |
3L | 28103327 | 3L | 5921802..5922140 | 1026..1364 | 1695 | 100 | Plus |
3L | 28103327 | 3L | 5918500..5918726 | 626..852 | 1135 | 100 | Plus |
3L | 28103327 | 3L | 5917155..5917292 | 1..138 | 690 | 100 | Plus |
3L | 28103327 | 3L | 5921636..5921740 | 923..1027 | 525 | 100 | Plus |
3L | 28103327 | 3L | 5921322..5921397 | 849..924 | 380 | 100 | Plus |
3L | 28103327 | 3L | 5916521..5916590 | 692..761 | 140 | 80 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 5917985..5918208 | 627..850 | 98 | -> | Plus |
chr3L | 5920820..5920892 | 851..923 | 100 | -> | Plus |
chr3L | 5921133..5921236 | 924..1027 | 100 | -> | Plus |
chr3L | 5916629..5916769 | 1..140 | 98 | -> | Plus |
chr3L | 5917421..5917906 | 141..626 | 99 | -> | Plus |
chr3L | 5921300..5921635 | 1028..1363 | 99 | -> | Plus |
chr3L | 5921700..5922716 | 1364..2380 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33523-RD | 1..1497 | 51..1546 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33523-RD | 1..1497 | 51..1546 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33523-RF | 1..1965 | 51..2014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33523-RD | 1..1497 | 51..1546 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33B-RF | 1..1965 | 51..2014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33523-RD | 1..2381 | 1..2380 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33523-RD | 1..2381 | 1..2380 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33523-RD | 3..2383 | 1..2380 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33523-RD | 1..2381 | 1..2380 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vap-33B-RD | 194..2574 | 1..2380 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5924055..5924195 | 1..140 | 99 | -> | Plus |
3L | 5924837..5925322 | 141..626 | 100 | -> | Plus |
3L | 5925401..5925624 | 627..850 | 100 | -> | Plus |
3L | 5928224..5928296 | 851..923 | 100 | -> | Plus |
3L | 5928537..5928640 | 924..1027 | 100 | -> | Plus |
3L | 5928704..5929039 | 1028..1363 | 100 | -> | Plus |
3L | 5929104..5930120 | 1364..2380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5924055..5924195 | 1..140 | 99 | -> | Plus |
3L | 5924837..5925322 | 141..626 | 100 | -> | Plus |
3L | 5925401..5925624 | 627..850 | 100 | -> | Plus |
3L | 5928224..5928296 | 851..923 | 100 | -> | Plus |
3L | 5928537..5928640 | 924..1027 | 100 | -> | Plus |
3L | 5928704..5929039 | 1028..1363 | 100 | -> | Plus |
3L | 5929104..5930120 | 1364..2380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5924055..5924195 | 1..140 | 99 | -> | Plus |
3L | 5924837..5925322 | 141..626 | 100 | -> | Plus |
3L | 5925401..5925624 | 627..850 | 100 | -> | Plus |
3L | 5928224..5928296 | 851..923 | 100 | -> | Plus |
3L | 5928537..5928640 | 924..1027 | 100 | -> | Plus |
3L | 5928704..5929039 | 1028..1363 | 100 | -> | Plus |
3L | 5929104..5930120 | 1364..2380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 5917155..5917295 | 1..140 | 99 | -> | Plus |
arm_3L | 5917937..5918422 | 141..626 | 100 | -> | Plus |
arm_3L | 5918501..5918724 | 627..850 | 100 | -> | Plus |
arm_3L | 5921324..5921396 | 851..923 | 100 | -> | Plus |
arm_3L | 5921637..5921740 | 924..1027 | 100 | -> | Plus |
arm_3L | 5921804..5922139 | 1028..1363 | 100 | -> | Plus |
arm_3L | 5922204..5923220 | 1364..2380 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5917937..5918422 | 141..626 | 100 | -> | Plus |
3L | 5918501..5918724 | 627..850 | 100 | -> | Plus |
3L | 5921324..5921396 | 851..923 | 100 | -> | Plus |
3L | 5921637..5921740 | 924..1027 | 100 | -> | Plus |
3L | 5921804..5922139 | 1028..1363 | 100 | -> | Plus |
3L | 5922204..5923220 | 1364..2380 | 100 | Plus | |
3L | 5917155..5917295 | 1..140 | 99 | -> | Plus |
Translation from 2 to 1545
> RE40017.hyp SCHKLGSERVRKLTGSMGVKVKETTPQQIEELRDRFNRKYASSPPAAPFH PTDIDRIRNDHLWLQRFLEMYDLDMETSFNSLWETCILRQSTGANDIDES ELNQEYLKEGSVFVHNTDVDGKPLLVFRVKMHSKSKNLDELIRIVVYWVE RTQREQHLTQLTIFFDMSGTSLASMDLEFVKRIVETFKQFYPNSLNYILV YELGWVLNAAFKVIKAVLPPKAVEILKMISKKDINQYINKDNCLAIWGGE DNYEFSFVPEAKKVISKPVAANAGDDDQFADKKVTFVDSAPMVLKETNIN KMHTPSEGMLHINPKDFVNFNSKNAEATMTIKSIATSAVTYKIQTTSPEK FRVRPRCGIIQPNQEATINIWLKSEHKLSDDSKDKFLVMAMVAPGGECGG ADVTELWRSKSPTSADVEQHRLVCRFDENKSKAQLDCASKSSKASVDCSK KSGAGVDPATAMERQLAFTQNLQYVTLALLFLLFAGFGFLMYQQLGQHAA TCPKATAYSCAKRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vap-33B-PF | 654 | CG33523-PF | 1..498 | 17..514 | 2592 | 100 | Plus |
Vap-33B-PD | 498 | CG33523-PD | 1..498 | 17..514 | 2592 | 100 | Plus |
Vap-33B-PE | 285 | CG33523-PE | 1..271 | 17..287 | 1404 | 98.9 | Plus |
Vap-33B-PA | 234 | CG33523-PA | 3..234 | 283..514 | 1199 | 99.6 | Plus |
Vap-33B-PC | 240 | CG33523-PC | 10..240 | 284..514 | 1197 | 100 | Plus |
Translation from 208 to 1545
> RE40017.pep MYDLDMETSFNSLWETCILRQSTGANDIDESELNQEYLKEGSVFVHNTDV DGKPLLVFRVKMHSKSKNLDELIRIVVYWVERTQREQHLTQLTIFFDMSG TSLASMDLEFVKRIVETFKQFYPNSLNYILVYELGWVLNAAFKVIKAVLP PKAVEILKMISKKDINQYINKDNCLAIWGGEDNYEFSFVPEAKKVISKPV AANAGDDDQFADKKVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVN FNSKNAEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATIN IWLKSEHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQ HRLVCRFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFT QNLQYVTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24005-PA | 662 | GF24005-PA | 54..504 | 1..440 | 1700 | 73.4 | Plus |
Dana\GF24004-PA | 240 | GF24004-PA | 53..239 | 1..188 | 581 | 53.7 | Plus |
Dana\GF23828-PA | 176 | GF23828-PA | 26..142 | 240..356 | 183 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15302-PA | 497 | GG15302-PA | 54..497 | 1..445 | 2062 | 88.3 | Plus |
Dere\GG15300-PA | 241 | GG15300-PA | 53..240 | 1..188 | 568 | 52.1 | Plus |
Dere\GG13971-PA | 166 | GG13971-PA | 8..122 | 241..355 | 192 | 32.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14689-PA | 482 | GH14689-PA | 55..482 | 2..445 | 1335 | 56.3 | Plus |
Dgri\GH14688-PA | 243 | GH14688-PA | 54..240 | 2..188 | 586 | 52.4 | Plus |
Dgri\GH14569-PA | 223 | GH14569-PA | 49..217 | 7..172 | 147 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33523-PF | 654 | CG33523-PF | 54..498 | 1..445 | 2307 | 100 | Plus |
CG33523-PD | 498 | CG33523-PD | 54..498 | 1..445 | 2307 | 100 | Plus |
CG33523-PA | 234 | CG33523-PA | 3..234 | 214..445 | 1199 | 99.6 | Plus |
CG33523-PC | 240 | CG33523-PC | 10..240 | 215..445 | 1197 | 100 | Plus |
CG33523-PE | 285 | CG33523-PE | 54..271 | 1..218 | 1119 | 98.6 | Plus |
CG33523-PB | 206 | CG33523-PB | 1..206 | 240..445 | 1068 | 100 | Plus |
CG32407-PB | 241 | CG32407-PB | 53..240 | 1..188 | 558 | 51.1 | Plus |
CG32407-PA | 241 | CG32407-PA | 53..240 | 1..188 | 558 | 51.1 | Plus |
CG6527-PB | 166 | CG6527-PB | 8..141 | 241..374 | 186 | 28.4 | Plus |
CG6527-PA | 166 | CG6527-PA | 8..141 | 241..374 | 186 | 28.4 | Plus |
CG32485-PA | 222 | CG32485-PA | 49..216 | 7..172 | 151 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13304-PA | 504 | GI13304-PA | 54..504 | 1..445 | 1423 | 62.7 | Plus |
Dmoj\GI13303-PA | 243 | GI13303-PA | 54..240 | 2..188 | 583 | 52.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21079-PA | 498 | GL21079-PA | 54..497 | 1..445 | 1533 | 66.3 | Plus |
Dper\GL21069-PA | 241 | GL21069-PA | 54..240 | 2..188 | 594 | 54.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28323-PA | 498 | GA28323-PA | 54..497 | 1..445 | 1526 | 66.1 | Plus |
Dpse\GA16879-PA | 241 | GA16879-PA | 54..240 | 2..188 | 594 | 54.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14735-PA | 497 | GM14735-PA | 54..497 | 1..445 | 2153 | 92.6 | Plus |
Dsec\GM14734-PA | 241 | GM14734-PA | 53..240 | 1..188 | 575 | 52.7 | Plus |
Dsec\GM24808-PA | 162 | GM24808-PA | 8..141 | 241..374 | 191 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13915-PA | 240 | GD13915-PA | 10..240 | 215..445 | 1217 | 97 | Plus |
Dsim\GD13914-PA | 236 | GD13914-PA | 1..208 | 6..214 | 997 | 87.6 | Plus |
Dsim\GD13913-PA | 241 | GD13913-PA | 53..240 | 1..188 | 573 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12072-PA | 487 | GJ12072-PA | 54..487 | 1..445 | 1349 | 59.2 | Plus |
Dvir\GJ12071-PA | 243 | GJ12071-PA | 54..242 | 2..190 | 635 | 56.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16664-PA | 638 | GK16664-PA | 54..429 | 1..357 | 1327 | 66.6 | Plus |
Dwil\GK16663-PA | 241 | GK16663-PA | 54..240 | 2..188 | 579 | 52.4 | Plus |
Dwil\GK12362-PA | 144 | GK12362-PA | 3..122 | 238..356 | 155 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21523-PA | 641 | GE21523-PA | 54..493 | 1..440 | 2096 | 90.5 | Plus |
Dyak\GE21522-PA | 241 | GE21522-PA | 53..240 | 1..188 | 583 | 53.2 | Plus |
Dyak\GE20270-PA | 174 | GE20270-PA | 8..122 | 241..355 | 190 | 31.3 | Plus |