Clone RE40017 Report

Search the DGRC for RE40017

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:400
Well:17
Vector:pFlc-1
Associated Gene/TranscriptCG33523-RB
Protein status:RE40017.pep: validated not full length
Sequenced Size:2396

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33523 2002-10-19 Blastp of sequenced clone
CG10977 2003-01-01 Sim4 clustering to Release 3
CG33523 2008-04-29 Release 5.5 accounting
CG33523 2008-08-15 Release 5.9 accounting
CG33523 2008-12-18 5.12 accounting

Clone Sequence Records

RE40017.complete Sequence

2396 bp (2396 high quality bases) assembled on 2002-10-19

GenBank Submission: BT001638

> RE40017.complete
AGTCTTGCCACAAGCTTGGTAGCGAACGAGTGCGAAAACTAACTGGCAGC
ATGGGCGTCAAGGTCAAGGAAACGACACCCCAGCAAATCGAGGAGCTGCG
CGATAGGTTCAATCGCAAATATGCCTCATCCCCTCCGGAGCACCTTTCCA
TCCGACCGATATTGATCGTATTCGCAACGATCATCTGTGGCTTCAAAGGT
TTCTGGAAATGTATGATCTCGACATGGAGACCTCCTTTAATTCGCTGTGG
GAAACCTGTATCTTGCGTCAGTCAACTGGGGCAAACGATATCGATGAGAG
CGAGTTGAACCAGGAGTATTTGAAGGAGGGATCCGTGTTTGTGCACAACA
CTGATGTGGATGGCAAGCCGTTGTTGGTATTCCGCGTTAAGATGCACAGT
AAGTCCAAGAACCTGGACGAACTGATACGCATCGTGGTGTACTGGGTGGA
AAGGACTCAGAGGGAGCAGCATCTGACCCAGTTGACCATATTCTTCGACA
TGTCGGGCACGAGTTTGGCCTCCATGGATCTGGAGTTTGTGAAACGCATT
GTGGAGACATTTAAGCAGTTCTATCCCAATAGCTTGAACTACATTTTGGT
ATATGAACTGGGCTGGGTACTAAATGCTGCTTTTAAGGTCATCAAGGCGG
TGCTGCCACCCAAAGCGGTTGAGATTTTAAAAATGATATCGAAAAAGGAC
ATCAACCAGTACATTAACAAGGATAACTGCCTGGCCATCTGGGGTGGCGA
GGATAACTACGAATTTAGCTTTGTGCCGGAGGCTAAAAAGGTCATTTCCA
AACCGGTGGCTGCCAATGCTGGCGATGATGACCAATTCGCGGACAAAAAG
GTCACCTTTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAA
CAAGATGCACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATT
TTGTCAACTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCT
ATTGCCACCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAA
GTTCCGTGTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCA
CCATCAACATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAG
GATAAGTTCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGG
CGCCGATGTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATG
TGGAGCAGCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCG
CAGCTAGATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAA
GAAGTCCGGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGG
CATTCACCCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTG
TTTGCCGGCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGC
TACCTGTCCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAATAATATT
TACTTAGCCCGTGCAATTTGACCAGGCAGGAGCTAGACATTGCCGCTCGC
GATAGCCACAACAATAACGAAGACGACTGCGACTGTCCAGAGCTGGAGAA
CTGTGCCTGTGCTGTTGATTTGATGAATCTAGGTCTGGACTGTGCCGATA
CGATGGACCAATACGATGGCGAATGCCTCGAGGCACTGATACAGGCGCAT
CTGCAGCTGTGCCTCAGCTGTCAGGGCACTGGTGATTGGCAGCTGGGCGG
CGTTGCTGCCGGCGGCCATTTGCTGGGATTCATCGCATTCGCAAGGAAGA
TGGTGCGCGTCGTTCTTTCGCTATCGCTGCTGTGCGGCATCTTGTTCGTG
AGCTTCTACCTGGGAAGCAACTACGGCGGAAACTCCACCACCACTACCAT
AACCACCTCCCTAGCCACAGTCGACTCAGGCAGAGGCAATCGTCAGCCGT
GTTACTACTCGTAGTGAAGCCAAAACCCTCAACTGTGCATGCCAGGGTGG
TTCGATTTGTTCAGCAGTAAATGCAACTTGTTCACCTCTGTACACGTAAT
AATCCATTTTGACCCTTGCCAGGTATGAAAACTACAAATATTAAAGCCTT
CTTACATACTTCAATGGCTTGCATTCATGAATTCCCGGGTCCTGCGAATT
GTTTAGACACCTTTGCTTTTAAAGGTAATTTTAAGATGTTTCCCTTCATT
GCAAATCGAACCACCCTCCAAGCAAATACATATTTTTGTATAAATCTTAA
GACCTACCATAAGAGTAACAATTTCGTGTTTCCTGATATTATTGAGTAAA
TGATGTCTCGCGCTTACGAGACAATCTCCCAAAAAAAAAAAAAAAA

RE40017.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523.g 2671 CG33523.g 152..2534 1..2382 11875 99.9 Plus
CG33523-RD 3071 CG33523-RD 427..2809 1..2382 11875 99.9 Plus
CG33523.f 2448 CG33523.f 68..2311 139..2382 11220 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5921700..5922716 1364..2380 4950 99.1 Plus
chr3L 24539361 chr3L 5917419..5917906 139..626 2410 99.6 Plus
chr3L 24539361 chr3L 5921298..5921636 1026..1364 1680 99.7 Plus
chr3L 24539361 chr3L 5917984..5918210 626..852 1090 98.7 Plus
chr3L 24539361 chr3L 5916629..5916766 1..138 675 99.3 Plus
chr3L 24539361 chr3L 5921132..5921236 923..1027 525 100 Plus
chr3L 24539361 chr3L 5920818..5920893 849..924 380 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5929104..5930122 1364..2382 5095 100 Plus
3L 28110227 3L 5924835..5925322 139..626 2440 100 Plus
3L 28110227 3L 5928702..5929040 1026..1364 1695 100 Plus
3L 28110227 3L 5925400..5925626 626..852 1135 100 Plus
3L 28110227 3L 5924055..5924192 1..138 690 100 Plus
3L 28110227 3L 5928536..5928640 923..1027 525 100 Plus
3L 28110227 3L 5928222..5928297 849..924 380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5922204..5923222 1364..2382 5095 100 Plus
3L 28103327 3L 5917935..5918422 139..626 2440 100 Plus
3L 28103327 3L 5921802..5922140 1026..1364 1695 100 Plus
3L 28103327 3L 5918500..5918726 626..852 1135 100 Plus
3L 28103327 3L 5917155..5917292 1..138 690 100 Plus
3L 28103327 3L 5921636..5921740 923..1027 525 100 Plus
3L 28103327 3L 5921322..5921397 849..924 380 100 Plus
3L 28103327 3L 5916521..5916590 692..761 140 80 Plus
Blast to na_te.dros performed on 2019-03-16 04:58:02 has no hits.

RE40017.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:59:03 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5917985..5918208 627..850 98 -> Plus
chr3L 5920820..5920892 851..923 100 -> Plus
chr3L 5921133..5921236 924..1027 100 -> Plus
chr3L 5916629..5916769 1..140 98 -> Plus
chr3L 5917421..5917906 141..626 99 -> Plus
chr3L 5921300..5921635 1028..1363 99 -> Plus
chr3L 5921700..5922716 1364..2380 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:14:50 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 1..1497 51..1546 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:09:40 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 1..1497 51..1546 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:47:02 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RF 1..1965 51..2014 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:35 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 1..1497 51..1546 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:55:38 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RF 1..1965 51..2014 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:30:38 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 1..2381 1..2380 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:09:39 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 1..2381 1..2380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:02 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 3..2383 1..2380 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:00:35 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 1..2381 1..2380 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:55:38 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RD 194..2574 1..2380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:03 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5924055..5924195 1..140 99 -> Plus
3L 5924837..5925322 141..626 100 -> Plus
3L 5925401..5925624 627..850 100 -> Plus
3L 5928224..5928296 851..923 100 -> Plus
3L 5928537..5928640 924..1027 100 -> Plus
3L 5928704..5929039 1028..1363 100 -> Plus
3L 5929104..5930120 1364..2380 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:03 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5924055..5924195 1..140 99 -> Plus
3L 5924837..5925322 141..626 100 -> Plus
3L 5925401..5925624 627..850 100 -> Plus
3L 5928224..5928296 851..923 100 -> Plus
3L 5928537..5928640 924..1027 100 -> Plus
3L 5928704..5929039 1028..1363 100 -> Plus
3L 5929104..5930120 1364..2380 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:03 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5924055..5924195 1..140 99 -> Plus
3L 5924837..5925322 141..626 100 -> Plus
3L 5925401..5925624 627..850 100 -> Plus
3L 5928224..5928296 851..923 100 -> Plus
3L 5928537..5928640 924..1027 100 -> Plus
3L 5928704..5929039 1028..1363 100 -> Plus
3L 5929104..5930120 1364..2380 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:02 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5917155..5917295 1..140 99 -> Plus
arm_3L 5917937..5918422 141..626 100 -> Plus
arm_3L 5918501..5918724 627..850 100 -> Plus
arm_3L 5921324..5921396 851..923 100 -> Plus
arm_3L 5921637..5921740 924..1027 100 -> Plus
arm_3L 5921804..5922139 1028..1363 100 -> Plus
arm_3L 5922204..5923220 1364..2380 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:32:05 Download gff for RE40017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5917937..5918422 141..626 100 -> Plus
3L 5918501..5918724 627..850 100 -> Plus
3L 5921324..5921396 851..923 100 -> Plus
3L 5921637..5921740 924..1027 100 -> Plus
3L 5921804..5922139 1028..1363 100 -> Plus
3L 5922204..5923220 1364..2380 100   Plus
3L 5917155..5917295 1..140 99 -> Plus

RE40017.hyp Sequence

Translation from 2 to 1545

> RE40017.hyp
SCHKLGSERVRKLTGSMGVKVKETTPQQIEELRDRFNRKYASSPPAAPFH
PTDIDRIRNDHLWLQRFLEMYDLDMETSFNSLWETCILRQSTGANDIDES
ELNQEYLKEGSVFVHNTDVDGKPLLVFRVKMHSKSKNLDELIRIVVYWVE
RTQREQHLTQLTIFFDMSGTSLASMDLEFVKRIVETFKQFYPNSLNYILV
YELGWVLNAAFKVIKAVLPPKAVEILKMISKKDINQYINKDNCLAIWGGE
DNYEFSFVPEAKKVISKPVAANAGDDDQFADKKVTFVDSAPMVLKETNIN
KMHTPSEGMLHINPKDFVNFNSKNAEATMTIKSIATSAVTYKIQTTSPEK
FRVRPRCGIIQPNQEATINIWLKSEHKLSDDSKDKFLVMAMVAPGGECGG
ADVTELWRSKSPTSADVEQHRLVCRFDENKSKAQLDCASKSSKASVDCSK
KSGAGVDPATAMERQLAFTQNLQYVTLALLFLLFAGFGFLMYQQLGQHAA
TCPKATAYSCAKRK*

RE40017.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-PF 654 CG33523-PF 1..498 17..514 2592 100 Plus
Vap-33B-PD 498 CG33523-PD 1..498 17..514 2592 100 Plus
Vap-33B-PE 285 CG33523-PE 1..271 17..287 1404 98.9 Plus
Vap-33B-PA 234 CG33523-PA 3..234 283..514 1199 99.6 Plus
Vap-33B-PC 240 CG33523-PC 10..240 284..514 1197 100 Plus

RE40017.pep Sequence

Translation from 208 to 1545

> RE40017.pep
MYDLDMETSFNSLWETCILRQSTGANDIDESELNQEYLKEGSVFVHNTDV
DGKPLLVFRVKMHSKSKNLDELIRIVVYWVERTQREQHLTQLTIFFDMSG
TSLASMDLEFVKRIVETFKQFYPNSLNYILVYELGWVLNAAFKVIKAVLP
PKAVEILKMISKKDINQYINKDNCLAIWGGEDNYEFSFVPEAKKVISKPV
AANAGDDDQFADKKVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVN
FNSKNAEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATIN
IWLKSEHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQ
HRLVCRFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFT
QNLQYVTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*

RE40017.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24005-PA 662 GF24005-PA 54..504 1..440 1700 73.4 Plus
Dana\GF24004-PA 240 GF24004-PA 53..239 1..188 581 53.7 Plus
Dana\GF23828-PA 176 GF23828-PA 26..142 240..356 183 30.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15302-PA 497 GG15302-PA 54..497 1..445 2062 88.3 Plus
Dere\GG15300-PA 241 GG15300-PA 53..240 1..188 568 52.1 Plus
Dere\GG13971-PA 166 GG13971-PA 8..122 241..355 192 32.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14689-PA 482 GH14689-PA 55..482 2..445 1335 56.3 Plus
Dgri\GH14688-PA 243 GH14688-PA 54..240 2..188 586 52.4 Plus
Dgri\GH14569-PA 223 GH14569-PA 49..217 7..172 147 23.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PF 654 CG33523-PF 54..498 1..445 2307 100 Plus
CG33523-PD 498 CG33523-PD 54..498 1..445 2307 100 Plus
CG33523-PA 234 CG33523-PA 3..234 214..445 1199 99.6 Plus
CG33523-PC 240 CG33523-PC 10..240 215..445 1197 100 Plus
CG33523-PE 285 CG33523-PE 54..271 1..218 1119 98.6 Plus
CG33523-PB 206 CG33523-PB 1..206 240..445 1068 100 Plus
CG32407-PB 241 CG32407-PB 53..240 1..188 558 51.1 Plus
CG32407-PA 241 CG32407-PA 53..240 1..188 558 51.1 Plus
CG6527-PB 166 CG6527-PB 8..141 241..374 186 28.4 Plus
CG6527-PA 166 CG6527-PA 8..141 241..374 186 28.4 Plus
CG32485-PA 222 CG32485-PA 49..216 7..172 151 22.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13304-PA 504 GI13304-PA 54..504 1..445 1423 62.7 Plus
Dmoj\GI13303-PA 243 GI13303-PA 54..240 2..188 583 52.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21079-PA 498 GL21079-PA 54..497 1..445 1533 66.3 Plus
Dper\GL21069-PA 241 GL21069-PA 54..240 2..188 594 54.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28323-PA 498 GA28323-PA 54..497 1..445 1526 66.1 Plus
Dpse\GA16879-PA 241 GA16879-PA 54..240 2..188 594 54.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14735-PA 497 GM14735-PA 54..497 1..445 2153 92.6 Plus
Dsec\GM14734-PA 241 GM14734-PA 53..240 1..188 575 52.7 Plus
Dsec\GM24808-PA 162 GM24808-PA 8..141 241..374 191 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13915-PA 240 GD13915-PA 10..240 215..445 1217 97 Plus
Dsim\GD13914-PA 236 GD13914-PA 1..208 6..214 997 87.6 Plus
Dsim\GD13913-PA 241 GD13913-PA 53..240 1..188 573 52.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12072-PA 487 GJ12072-PA 54..487 1..445 1349 59.2 Plus
Dvir\GJ12071-PA 243 GJ12071-PA 54..242 2..190 635 56.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16664-PA 638 GK16664-PA 54..429 1..357 1327 66.6 Plus
Dwil\GK16663-PA 241 GK16663-PA 54..240 2..188 579 52.4 Plus
Dwil\GK12362-PA 144 GK12362-PA 3..122 238..356 155 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21523-PA 641 GE21523-PA 54..493 1..440 2096 90.5 Plus
Dyak\GE21522-PA 241 GE21522-PA 53..240 1..188 583 53.2 Plus
Dyak\GE20270-PA 174 GE20270-PA 8..122 241..355 190 31.3 Plus