BDGP Sequence Production Resources |
Search the DGRC for RE40051
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 400 |
Well: | 51 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Scgbeta-RA |
Protein status: | RE40051.pep: gold |
Preliminary Size: | 1167 |
Sequenced Size: | 1210 |
Gene | Date | Evidence |
---|---|---|
CG5657 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5657 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5657 | 2003-08-07 | Blastp of sequenced clone |
Scgbeta | 2008-04-29 | Release 5.5 accounting |
Scgbeta | 2008-08-15 | Release 5.9 accounting |
Scgbeta | 2008-12-18 | 5.12 accounting |
1210 bp (1210 high quality bases) assembled on 2003-08-07
GenBank Submission: AY071368
> RE40051.complete GTACATGCCCAATTTCCTTGCACTGAATACAGCAATTGTGCAAACGGTTT TTTGAGTTCAACTCGCCAGGAATTCAATTCAATCCAATGATGCACACATT CGAGAACACCTTCATCCGTGGACCATCGCCGTCATATTCCGACGACGCCA ACTCGGAGAACGCGCTCTCTGTGACGCTGCCCATTGGAGGAGTTGTGCCG GACTTGGACTTTTGTCGCGACGACTCGAAAACGGATACGGGCGATTACTT CGATGAGAAGTACAACAGCGACAGCTGCTCCCGCCTGCATCCGGGTCACC AGGGACGCAACACGTTCGCCTTCTGGACCATTGTGGTGTTGCTGCTGGTG CTGACCGTTGGCAATCTTCTGCTGACGCTCACCATTGTGGGTGTGCTTCG CCTGGGCAAAGGTGTCCAGGGCATGGAGGTGATACCCGAGGTGGATTTGG TGAAGTTCTACGGTACCACGGACTTGGAGCGCGTGCAGACGAACTCGATT GGCCAGATACACGGCTTCTCGGATGTCCCGGTGACCATCAGCAGTGATGC TGGTGACGGCGAGGGCGGCGTCCATGTGCGCGTCTTCCGCAATGGCAATG GAGCAGCCAGCGAACGCGATAGGATCGTCCTGAACAGGGAGGGTATCCTC GTGCAGGCCACGAACTTGTTCGAGGTCAAGGACCCCGTCGACAAGCAGCC GATTTTCACCACCCATCGTCCGCAGTATAACATTCCGGGCGGAGTGGAGG CGCTGCAGGCCAAAGTGGTTAGTGCCAGCGGCATCGTCAGTCCCATCGAC GAGTCCCTGGTGCTGGAGAGCGACGGACGCATGGCCATCAGGGGATCCGA GGGCGTCTACTTCGACGGAGCCAGCGTTGACATGCAGGCCGAGCACCACA TTCTCATCAACTCCACGCAGGGCGCCACCATCCTGGAGGCAGGCACGGGT ATCTTTCTGGACATGGACCGCATTCCCATCGTCAGCTCCGAGCTGGGTCT CCGCACGGGCAGTGTGCAGTACAAGATTTGCGTGTGCATGCCGCATGGAA CGCTCTTCCGGATCGCCATACCCAGGGTACACAACGGACCCAAGATCACA TGCGCCCACTTCAGCGGCAAGGACGATCCCTGCGAGATCAACTAAGTGCG TTTGGAAATAAAGTGCAGCGTTACGATTATCGTATCCCTAAAACAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scgbeta-RA | 1196 | Scgbeta-RA | 1..1196 | 1..1196 | 5980 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 8246625..8247818 | 1194..1 | 5910 | 99.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 12421233..12422429 | 1197..1 | 5985 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 12162064..12163260 | 1197..1 | 5985 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8246625..8247818 | 1..1194 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1059 | 87..1145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1059 | 87..1145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1059 | 87..1145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1059 | 87..1145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1059 | 87..1145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1194 | 1..1194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1194 | 1..1194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1194 | 1..1194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1194 | 1..1194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scgbeta-RA | 1..1194 | 1..1194 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12421236..12422429 | 1..1194 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12421236..12422429 | 1..1194 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12421236..12422429 | 1..1194 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8246958..8248151 | 1..1194 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12162067..12163260 | 1..1194 | 100 | Minus |
Translation from 86 to 1144
> RE40051.pep MMHTFENTFIRGPSPSYSDDANSENALSVTLPIGGVVPDLDFCRDDSKTD TGDYFDEKYNSDSCSRLHPGHQGRNTFAFWTIVVLLLVLTVGNLLLTLTI VGVLRLGKGVQGMEVIPEVDLVKFYGTTDLERVQTNSIGQIHGFSDVPVT ISSDAGDGEGGVHVRVFRNGNGAASERDRIVLNREGILVQATNLFEVKDP VDKQPIFTTHRPQYNIPGGVEALQAKVVSASGIVSPIDESLVLESDGRMA IRGSEGVYFDGASVDMQAEHHILINSTQGATILEAGTGIFLDMDRIPIVS SELGLRTGSVQYKICVCMPHGTLFRIAIPRVHNGPKITCAHFSGKDDPCE IN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17045-PA | 348 | GF17045-PA | 1..348 | 2..352 | 1628 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17128-PA | 352 | GG17128-PA | 1..352 | 1..352 | 1816 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17465-PA | 357 | GH17465-PA | 1..357 | 1..352 | 1304 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scgbeta-PA | 352 | CG5657-PA | 1..352 | 1..352 | 1832 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22789-PA | 352 | GI22789-PA | 1..352 | 2..352 | 1305 | 70.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27177-PA | 354 | GL27177-PA | 1..354 | 2..352 | 1523 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19038-PA | 354 | GA19038-PA | 1..354 | 2..352 | 1524 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26011-PA | 325 | GM26011-PA | 1..325 | 1..352 | 1663 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20569-PA | 352 | GD20569-PA | 1..352 | 1..352 | 1853 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22792-PA | 354 | GJ22792-PA | 1..353 | 2..351 | 1299 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12845-PA | 353 | GK12845-PA | 1..353 | 2..352 | 1548 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24519-PA | 352 | GE24519-PA | 1..352 | 1..352 | 1817 | 96.6 | Plus |
Translation from 86 to 1144
> RE40051.hyp MMHTFENTFIRGPSPSYSDDANSENALSVTLPIGGVVPDLDFCRDDSKTD TGDYFDEKYNSDSCSRLHPGHQGRNTFAFWTIVVLLLVLTVGNLLLTLTI VGVLRLGKGVQGMEVIPEVDLVKFYGTTDLERVQTNSIGQIHGFSDVPVT ISSDAGDGEGGVHVRVFRNGNGAASERDRIVLNREGILVQATNLFEVKDP VDKQPIFTTHRPQYNIPGGVEALQAKVVSASGIVSPIDESLVLESDGRMA IRGSEGVYFDGASVDMQAEHHILINSTQGATILEAGTGIFLDMDRIPIVS SELGLRTGSVQYKICVCMPHGTLFRIAIPRVHNGPKITCAHFSGKDDPCE IN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scgbeta-PA | 352 | CG5657-PA | 1..352 | 1..352 | 1832 | 100 | Plus |