Clone RE40051 Report

Search the DGRC for RE40051

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:400
Well:51
Vector:pFlc-1
Associated Gene/TranscriptScgbeta-RA
Protein status:RE40051.pep: gold
Preliminary Size:1167
Sequenced Size:1210

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5657 2002-01-01 Sim4 clustering to Release 2
CG5657 2003-01-01 Sim4 clustering to Release 3
CG5657 2003-08-07 Blastp of sequenced clone
Scgbeta 2008-04-29 Release 5.5 accounting
Scgbeta 2008-08-15 Release 5.9 accounting
Scgbeta 2008-12-18 5.12 accounting

Clone Sequence Records

RE40051.complete Sequence

1210 bp (1210 high quality bases) assembled on 2003-08-07

GenBank Submission: AY071368

> RE40051.complete
GTACATGCCCAATTTCCTTGCACTGAATACAGCAATTGTGCAAACGGTTT
TTTGAGTTCAACTCGCCAGGAATTCAATTCAATCCAATGATGCACACATT
CGAGAACACCTTCATCCGTGGACCATCGCCGTCATATTCCGACGACGCCA
ACTCGGAGAACGCGCTCTCTGTGACGCTGCCCATTGGAGGAGTTGTGCCG
GACTTGGACTTTTGTCGCGACGACTCGAAAACGGATACGGGCGATTACTT
CGATGAGAAGTACAACAGCGACAGCTGCTCCCGCCTGCATCCGGGTCACC
AGGGACGCAACACGTTCGCCTTCTGGACCATTGTGGTGTTGCTGCTGGTG
CTGACCGTTGGCAATCTTCTGCTGACGCTCACCATTGTGGGTGTGCTTCG
CCTGGGCAAAGGTGTCCAGGGCATGGAGGTGATACCCGAGGTGGATTTGG
TGAAGTTCTACGGTACCACGGACTTGGAGCGCGTGCAGACGAACTCGATT
GGCCAGATACACGGCTTCTCGGATGTCCCGGTGACCATCAGCAGTGATGC
TGGTGACGGCGAGGGCGGCGTCCATGTGCGCGTCTTCCGCAATGGCAATG
GAGCAGCCAGCGAACGCGATAGGATCGTCCTGAACAGGGAGGGTATCCTC
GTGCAGGCCACGAACTTGTTCGAGGTCAAGGACCCCGTCGACAAGCAGCC
GATTTTCACCACCCATCGTCCGCAGTATAACATTCCGGGCGGAGTGGAGG
CGCTGCAGGCCAAAGTGGTTAGTGCCAGCGGCATCGTCAGTCCCATCGAC
GAGTCCCTGGTGCTGGAGAGCGACGGACGCATGGCCATCAGGGGATCCGA
GGGCGTCTACTTCGACGGAGCCAGCGTTGACATGCAGGCCGAGCACCACA
TTCTCATCAACTCCACGCAGGGCGCCACCATCCTGGAGGCAGGCACGGGT
ATCTTTCTGGACATGGACCGCATTCCCATCGTCAGCTCCGAGCTGGGTCT
CCGCACGGGCAGTGTGCAGTACAAGATTTGCGTGTGCATGCCGCATGGAA
CGCTCTTCCGGATCGCCATACCCAGGGTACACAACGGACCCAAGATCACA
TGCGCCCACTTCAGCGGCAAGGACGATCCCTGCGAGATCAACTAAGTGCG
TTTGGAAATAAAGTGCAGCGTTACGATTATCGTATCCCTAAAACAAAAAA
AAAAAAAAAA

RE40051.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Scgbeta-RA 1196 Scgbeta-RA 1..1196 1..1196 5980 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8246625..8247818 1194..1 5910 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12421233..12422429 1197..1 5985 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12162064..12163260 1197..1 5985 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:17:25 has no hits.

RE40051.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:18:18 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8246625..8247818 1..1194 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:14:53 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1059 87..1145 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:16:07 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1059 87..1145 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:10:30 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1059 87..1145 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:42:12 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1059 87..1145 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:23 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1059 87..1145 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:48:09 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1194 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:16:07 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1194 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:30 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1194 1..1194 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:42:12 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1194 1..1194 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:23 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
Scgbeta-RA 1..1194 1..1194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:18 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12421236..12422429 1..1194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:18 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12421236..12422429 1..1194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:18 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12421236..12422429 1..1194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:30 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8246958..8248151 1..1194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:18:15 Download gff for RE40051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12162067..12163260 1..1194 100   Minus

RE40051.pep Sequence

Translation from 86 to 1144

> RE40051.pep
MMHTFENTFIRGPSPSYSDDANSENALSVTLPIGGVVPDLDFCRDDSKTD
TGDYFDEKYNSDSCSRLHPGHQGRNTFAFWTIVVLLLVLTVGNLLLTLTI
VGVLRLGKGVQGMEVIPEVDLVKFYGTTDLERVQTNSIGQIHGFSDVPVT
ISSDAGDGEGGVHVRVFRNGNGAASERDRIVLNREGILVQATNLFEVKDP
VDKQPIFTTHRPQYNIPGGVEALQAKVVSASGIVSPIDESLVLESDGRMA
IRGSEGVYFDGASVDMQAEHHILINSTQGATILEAGTGIFLDMDRIPIVS
SELGLRTGSVQYKICVCMPHGTLFRIAIPRVHNGPKITCAHFSGKDDPCE
IN*

RE40051.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17045-PA 348 GF17045-PA 1..348 2..352 1628 84.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17128-PA 352 GG17128-PA 1..352 1..352 1816 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17465-PA 357 GH17465-PA 1..357 1..352 1304 70 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Scgbeta-PA 352 CG5657-PA 1..352 1..352 1832 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22789-PA 352 GI22789-PA 1..352 2..352 1305 70.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27177-PA 354 GL27177-PA 1..354 2..352 1523 77.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19038-PA 354 GA19038-PA 1..354 2..352 1524 77.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26011-PA 325 GM26011-PA 1..325 1..352 1663 90.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20569-PA 352 GD20569-PA 1..352 1..352 1853 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22792-PA 354 GJ22792-PA 1..353 2..351 1299 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12845-PA 353 GK12845-PA 1..353 2..352 1548 79.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24519-PA 352 GE24519-PA 1..352 1..352 1817 96.6 Plus

RE40051.hyp Sequence

Translation from 86 to 1144

> RE40051.hyp
MMHTFENTFIRGPSPSYSDDANSENALSVTLPIGGVVPDLDFCRDDSKTD
TGDYFDEKYNSDSCSRLHPGHQGRNTFAFWTIVVLLLVLTVGNLLLTLTI
VGVLRLGKGVQGMEVIPEVDLVKFYGTTDLERVQTNSIGQIHGFSDVPVT
ISSDAGDGEGGVHVRVFRNGNGAASERDRIVLNREGILVQATNLFEVKDP
VDKQPIFTTHRPQYNIPGGVEALQAKVVSASGIVSPIDESLVLESDGRMA
IRGSEGVYFDGASVDMQAEHHILINSTQGATILEAGTGIFLDMDRIPIVS
SELGLRTGSVQYKICVCMPHGTLFRIAIPRVHNGPKITCAHFSGKDDPCE
IN*

RE40051.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Scgbeta-PA 352 CG5657-PA 1..352 1..352 1832 100 Plus