RE40068.complete Sequence
707 bp (707 high quality bases) assembled on 2002-01-09
GenBank Submission: AY075486
> RE40068.complete
AGTACCGAAACTTCAGCCACGATGAAACTACTGATTGCTCTGTTTGCACT
GGTGACCGCTGTGAACGCTCAGAATGGATTCGGCCAAGTTGGACAAGGAG
GATATGGAGGGCAAGGAGGATTTGGAGGATTCGGAGGAATCGGCGGGCAA
GCAGGTTTTGGTGGACAAATAGGATTCACTGGACAGGGTGGAGTTGGTGG
CCAGGTGGGAATTGGTCAAGGCGGAGTCCACCCGGGTCAAGGAGGATTCG
CTGGACAAGGTTCTCCAAACCAATATCAGCCTGGTTACGGAAGTCCTGTG
GGATCTGGCCATTTCCATGGAACTAATCCAGTTGAGTCCGGTCATTTTCA
CGAAAATCCTCATGAATATCCGGAACATCATGGCGATCATCACCGTGAAC
ATCATGAGCACCATGGACACCACGAACATCATGGACATCATAGACATTAG
TACAAATATGAGAATACCCATGACAAAATTAAAGGAATGTAATGCTATAG
TTCTCTACCGTAAATTCTTAAGAAACACTTGCTTGTTTCTGAAGTCTCTA
TTGTATCTAATGTCCAGAATTGATTTGTAAAAGTGATTCTTTATCTAAAA
CCCCCTTGAGATCCACTATACAACGTGCCTTCTTGAATTTCAGTATCTAA
AATGAAAAAAAAAACGGAGTCTCAATAAAAAAGTAAATAAGAAAAAAAAA
AAAAAAA
RE40068.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sala-RA | 966 | sala-RA | 140..834 | 1..695 | 3460 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 11485008..11485673 | 26..691 | 3300 | 99.7 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11486284..11486953 | 26..695 | 3305 | 99.6 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11486284..11486953 | 26..695 | 3305 | 99.5 | Plus |
2L | 23513712 | 2L | 11486189..11486221 | 1..33 | 165 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 16:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 4961..5001 | 489..449 | 106 | 73.2 | Minus |
RE40068.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:30:05 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 11484913..11484945 | 1..33 | 100 | -> | Plus |
chr2L | 11485016..11485673 | 34..691 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:14:54 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 1..429 | 22..450 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:51:38 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 1..429 | 22..450 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:02:42 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 1..429 | 22..450 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:17:45 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 1..429 | 22..450 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:15 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 1..429 | 22..450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:15:16 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 1..691 | 1..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:51:38 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 1..691 | 1..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:42 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 8..698 | 1..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:17:46 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 1..691 | 1..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:15 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 8..698 | 1..691 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:05 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11486189..11486221 | 1..33 | 100 | -> | Plus |
2L | 11486292..11486949 | 34..691 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:05 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11486189..11486221 | 1..33 | 100 | -> | Plus |
2L | 11486292..11486949 | 34..691 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:05 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11486189..11486221 | 1..33 | 100 | -> | Plus |
2L | 11486292..11486949 | 34..691 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:42 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11486189..11486221 | 1..33 | 100 | -> | Plus |
arm_2L | 11486292..11486949 | 34..691 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:51:51 Download gff for
RE40068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11486292..11486949 | 34..691 | 100 | | Plus |
2L | 11486189..11486221 | 1..33 | 100 | -> | Plus |
RE40068.hyp Sequence
Translation from 0 to 449
> RE40068.hyp
STETSATMKLLIALFALVTAVNAQNGFGQVGQGGYGGQGGFGGFGGIGGQ
AGFGGQIGFTGQGGVGGQVGIGQGGVHPGQGGFAGQGSPNQYQPGYGSPV
GSGHFHGTNPVESGHFHENPHEYPEHHGDHHREHHEHHGHHEHHGHHRH*
RE40068.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sala-PC | 142 | CG4922-PC | 1..142 | 8..149 | 826 | 100 | Plus |
sala-PA | 142 | CG4922-PA | 1..142 | 8..149 | 826 | 100 | Plus |
CG8157-PB | 113 | CG8157-PB | 1..111 | 8..145 | 238 | 48.2 | Plus |
CG8157-PA | 113 | CG8157-PA | 1..111 | 8..145 | 238 | 48.2 | Plus |
CG7299-PC | 177 | CG7299-PC | 68..131 | 24..90 | 203 | 61.2 | Plus |
RE40068.pep Sequence
Translation from 21 to 449
> RE40068.pep
MKLLIALFALVTAVNAQNGFGQVGQGGYGGQGGFGGFGGIGGQAGFGGQI
GFTGQGGVGGQVGIGQGGVHPGQGGFAGQGSPNQYQPGYGSPVGSGHFHG
TNPVESGHFHENPHEYPEHHGDHHREHHEHHGHHEHHGHHRH*
RE40068.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG23722-PA | 154 | GG23722-PA | 82..147 | 70..135 | 152 | 83.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sala-PC | 142 | CG4922-PC | 1..142 | 1..142 | 826 | 100 | Plus |
sala-PA | 142 | CG4922-PA | 1..142 | 1..142 | 826 | 100 | Plus |
CG8157-PB | 113 | CG8157-PB | 1..111 | 1..138 | 238 | 48.2 | Plus |
CG8157-PA | 113 | CG8157-PA | 1..111 | 1..138 | 238 | 48.2 | Plus |
CG7299-PC | 177 | CG7299-PC | 68..131 | 17..83 | 203 | 61.2 | Plus |
CG7299-PA | 177 | CG7299-PA | 68..131 | 17..83 | 203 | 61.2 | Plus |
CG7299-PC | 177 | CG7299-PC | 57..128 | 19..102 | 195 | 53.6 | Plus |
CG7299-PA | 177 | CG7299-PA | 57..128 | 19..102 | 195 | 53.6 | Plus |
prc-PB | 1713 | CG5700-PB | 938..1031 | 12..100 | 184 | 48.9 | Plus |
prc-PB | 1713 | CG5700-PB | 986..1073 | 14..96 | 176 | 48.9 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 296..387 | 16..100 | 176 | 46.8 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 296..387 | 16..100 | 176 | 46.8 | Plus |
nocte-PD | 2305 | CG17255-PD | 192..347 | 18..142 | 175 | 32.9 | Plus |
nocte-PB | 2309 | CG17255-PB | 192..347 | 18..142 | 175 | 32.9 | Plus |
nocte-PA | 2309 | CG17255-PA | 192..347 | 18..142 | 175 | 32.9 | Plus |
nocte-PC | 2309 | CG17255-PC | 192..347 | 18..142 | 175 | 32.9 | Plus |
CG7296-PB | 161 | CG7296-PB | 1..106 | 1..103 | 174 | 43.4 | Plus |
CG7296-PA | 161 | CG7296-PA | 1..106 | 1..103 | 174 | 43.4 | Plus |
CG10918-PA | 183 | CG10918-PA | 5..105 | 3..96 | 173 | 44.3 | Plus |
prc-PB | 1713 | CG5700-PB | 633..735 | 14..107 | 172 | 48.1 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 369..444 | 21..100 | 169 | 50 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 369..444 | 21..100 | 169 | 50 | Plus |
CG17105-PB | 103 | CG17105-PB | 1..81 | 1..77 | 166 | 45.7 | Plus |
CG17105-PA | 103 | CG17105-PA | 1..81 | 1..77 | 166 | 45.7 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 427..516 | 13..90 | 165 | 45.6 | Plus |
CG8160-PA | 212 | CG8160-PA | 1..98 | 1..92 | 163 | 42.1 | Plus |
CG8160-PA | 212 | CG8160-PA | 64..212 | 17..140 | 162 | 37 | Plus |
prc-PB | 1713 | CG5700-PB | 440..540 | 14..103 | 161 | 46.1 | Plus |
prc-PB | 1713 | CG5700-PB | 1003..1090 | 14..96 | 161 | 47.3 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 465..549 | 21..103 | 161 | 46 | Plus |
na-PG | 2224 | CG1517-PG | 26..147 | 19..142 | 159 | 34.1 | Plus |
na-PF | 2233 | CG1517-PF | 26..147 | 19..142 | 159 | 34.1 | Plus |
prc-PB | 1713 | CG5700-PB | 457..549 | 14..96 | 158 | 47.9 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 427..505 | 13..90 | 158 | 48.2 | Plus |
prc-PB | 1713 | CG5700-PB | 593..682 | 14..103 | 156 | 45.7 | Plus |
prc-PB | 1713 | CG5700-PB | 1032..1119 | 14..94 | 154 | 47.2 | Plus |
prc-PB | 1713 | CG5700-PB | 219..319 | 14..103 | 153 | 46.1 | Plus |
prc-PB | 1713 | CG5700-PB | 474..574 | 14..103 | 151 | 41.2 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 281..369 | 19..107 | 151 | 44.7 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 281..369 | 19..107 | 151 | 44.7 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 399..488 | 21..96 | 151 | 46.8 | Plus |
prc-PB | 1713 | CG5700-PB | 126..225 | 6..101 | 150 | 43.4 | Plus |
CG9757-PB | 127 | CG9757-PB | 51..112 | 26..94 | 150 | 56.5 | Plus |
CG9757-PA | 127 | CG9757-PA | 51..112 | 26..94 | 150 | 56.5 | Plus |
prc-PB | 1713 | CG5700-PB | 304..404 | 14..103 | 149 | 41.2 | Plus |
prc-PB | 1713 | CG5700-PB | 525..625 | 14..103 | 149 | 41.2 | Plus |
prc-PB | 1713 | CG5700-PB | 820..924 | 14..96 | 148 | 40 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 248..330 | 19..103 | 147 | 45.6 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 248..330 | 19..103 | 147 | 45.6 | Plus |
prc-PB | 1713 | CG5700-PB | 355..447 | 14..96 | 146 | 42.6 | Plus |
CG9757-PB | 127 | CG9757-PB | 59..126 | 19..94 | 146 | 57 | Plus |
CG9757-PA | 127 | CG9757-PA | 59..126 | 19..94 | 146 | 57 | Plus |
CG34166-PD | 82 | CG34166-PD | 1..79 | 1..90 | 146 | 47.8 | Plus |
CG34166-PC | 82 | CG34166-PC | 1..79 | 1..90 | 146 | 47.8 | Plus |
CG34166-PB | 82 | CG34166-PB | 1..79 | 1..90 | 146 | 47.8 | Plus |
CG34166-PA | 82 | CG34166-PA | 1..79 | 1..90 | 146 | 47.8 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 471..546 | 19..96 | 145 | 49.4 | Plus |
CG15140-PB | 335 | CG15140-PB | 221..319 | 18..116 | 145 | 38.5 | Plus |
CG17108-PA | 342 | CG17108-PA | 164..263 | 19..100 | 145 | 42.3 | Plus |
CG7296-PB | 161 | CG7296-PB | 55..115 | 19..80 | 142 | 54 | Plus |
CG7296-PA | 161 | CG7296-PA | 55..115 | 19..80 | 142 | 54 | Plus |
CG5172-PD | 172 | CG5172-PD | 13..122 | 3..124 | 142 | 41.5 | Plus |
Fib-PA | 344 | CG9888-PA | 25..119 | 17..111 | 142 | 42.7 | Plus |
CG9757-PB | 127 | CG9757-PB | 52..127 | 19..100 | 141 | 53.4 | Plus |
CG9757-PA | 127 | CG9757-PA | 52..127 | 19..100 | 141 | 53.4 | Plus |
CG9269-PA | 146 | CG9269-PA | 48..145 | 24..113 | 136 | 39.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19072-PA | 142 | GM19072-PA | 1..135 | 1..135 | 231 | 92.6 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\sala-PA | 142 | GD23778-PA | 1..135 | 1..135 | 226 | 91.9 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE18526-PA | 140 | GE18526-PA | 1..133 | 1..135 | 173 | 71.3 | Plus |