Clone RE40104 Report

Search the DGRC for RE40104

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:401
Well:4
Vector:pFlc-1
Associated Gene/Transcriptgrn-RA
Protein status:RE40104.pep: gold
Preliminary Size:3113
Sequenced Size:3465

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9656 2001-12-14 Blastp of sequenced clone
CG9656 2002-01-01 Sim4 clustering to Release 2
CG9656 2003-01-01 Sim4 clustering to Release 3
grn 2008-04-29 Release 5.5 accounting
grn 2008-08-15 Release 5.9 accounting
grn 2008-12-18 5.12 accounting
CG9656 2011-03-01 Transcript Validation

Clone Sequence Records

RE40104.complete Sequence

3465 bp (3465 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071369

> RE40104.complete
CAGTTCGATTTCAACTGTTGACGTGTTTGCAAGCGTGTTATCGGCGTGCG
TCCGCTAGTTTCGTTCGTATTTTGCTATCGATTTTCGTCTCGCCGCGACA
ATAACAAAGAAAGCTCGAAAAACGCGTCGGCAAAAATACACAAAAAGCGA
TCAAAGTGTACCAAAAATTAACAACAAATCAAATTATTGTAAAAAAAAAC
CCCAGTAAAAACAAGCAGAGTGATTGAAACAGTGTGCTTAAAATATAGAG
AAAGAGTTGAGTTGTTGAGTTGAGTGTTCTTTGTATATGAAAAATGCATA
GCTATCACTAAACAAAGAGCTAAATAAAAAGCGAAGACCACCCGACCGCA
GAGGGATACAGAACCGTCAGATTCCTGCCCCCCGGTAGAACAGAAAAACA
TTCAAGATTATACTCGAAATGGATATGACCTCAACAGCGGAGGCTGCCGC
TCGCAGCTGGTACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCG
GTGGCAATGGGGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCC
GGTAGCAGCCTGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTC
GGCGGGCAGCAGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGAT
CCGGACTGGACACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAAC
GGACACCACCGGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCAT
GCCCTCCACCCATGCCTCGCCTCAAGTGTGCCGGCCGCACTTCCACACCC
CGCTGAGTCCCTGGCTGACCAGCGAGCACAAGTCCTTCGCCCCCGCCAGC
GCCTGGAGCATGGGTCAGTTCGCCTGCCCGCAGGAGCCGCAGGTGGAGCA
CAAGCTGGGCCAGATGGGCCAGAGCCACCAGACGACGGCCGCCGGCCAGC
ATTCGTTCCCCTTCCCGCCGACGCCGCCAAAGGACTCCACGCCCGACTCC
GTGCAAACCGGTCCATCCGAGTACCAGGCCGTGATGAACGCGTTTATGCA
CCAGCAGGCCACGGGCTCTACCTCACTAACGGACGCCAGCTGTGCGTTGG
ATATCAAGCCGTCGATCCAGAACGGCAGTGCGAGCGGATCCTCCGGCAGC
GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGAGGGACGCGAGTG
TGTGAATTGTGGCGCCACATCGACGCCACTGTGGCGACGCGATGGAACGG
GACACTATCTGTGCAACGCCTGTGGCCTGTACTACAAAATGAACGGCCAG
AACCGACCCCTGATCAAGCCAAAGCGAAGACTGACCCTGCAATCGCTGCA
GAGTGCGGCCAAAAGGGCGGGCACATCCTGCGCCAACTGCAAGACCACAA
CCACAACCCTTTGGCGACGCAATGCCAGCGGTGAACCCGTGTGCAACGCC
TGCGGATTGTACTATAAGCTTCACAATGTCAATCGTCCACTCACCATGAA
AAAGGAGGGCATTCAGACGCGTAATCGCAAGCTGAGCTCCAAGTCCAAAA
AGAAGAAGGGTCTCGGTGGTGGCTGCCTGCCAATCGGTGGCCACCTGGGC
ATGGGCGACTTCAAGCCGCTGGATCCCTCGAAGGGATTCGGCGGTGGCTT
CTCTGCCTCCATGGCACAACATGGACACCTCTCGAGCGGACTGCATCCGG
CACATGCGCACATGCACGGCAGCTGGTACACCGGCGGCATGGGCGCTTTG
GGAGCCTCGAGCGGACTCCAGGGCGGCTTCTCCACCGCCGGCTCTCTCAG
CGGAGCGGTGGTGCCCCACTCGCAGCCGTACCACTTGGGTCTCAGTTCGA
TGGGCACCTGGCGCACTGACTACACGTGATGGAGCGGGAACAACCTGAAC
AACAATCTGTTCAGTTAGAGCCGCAAACTTGCCCCCACGCCGGAATCGAC
TTTTTCGAGTGGCAAATAGATCGGGACAAAACTAATCAAGACAACAAGAA
GTAAACTGACAAAACACAATGCCAAACTGAGGACTCCTTGGCCAGCAATT
GACAGTGGCACCGAACCCTTGACATCCCAGCGAAAATAATAATAATAATT
CGATGGAGTGTGGGTGGTGTGCCAACTGGACGAACGCTGGCTATTCCTAA
TTGTAAACATTGCGTGCAATTTTTAATTATTTAAGCTTTGTCGCTGTTGT
TGCTGCTGATGTTGTTGGCGAGGCAAGAGCCAAAAGGCGAGAGCCGGCAG
CAATAACAAAAGCCCCATTAAAATTAATTAAAGGGCTGCACATTACTTTT
ATTTTATTTTTCCTTTATGGCTTTTCTGTGAGTGTTTGTATAGTGTTTCC
TTATGTTTCATATTTCGCTTAATTAATTTAATTTCTCGCCGCAAATTCAG
CGTATTTAATTGTGCTTTATGAACTGCCATAAAACAGAATGAGGGAATGT
GAGGGGAATTTTCATAAATATTTATTGTGTACATATAACGGAAAACGAGA
ATCAAGCACACAGAGAACTAAAATTATTATATACAATAAACAAAAACAGT
TACAATGCACGTCCAAAAGTAAACATTTTTGTATAAATTAATAAAAAAAA
GAAAAGAACGTAGAAGTAAGTGAAGTTGCTTGTCCTAATTCGCAAAATGC
AATTGAAAATTGCACAAATACTTTAGAGCGTATGTCTACTGTAAACTAGT
TAAATTATTAGACTCTAAACAAAACAGACGTGATAAACAAAAAGTAAAAT
CTATATATACATAAATACATACATAAACATAACAAATTTCACTAGAGCGC
GCCATAAGCAATTGTAAAATAAATAATAACAAAACTAAAACAGTTAAGAA
GAAGGAATATCTTTTTGATGTAAAGCAAAGGCCGCCGTCAACTTTTAAAA
CTAAAAACACACACTTAAATGTTCAATGTTAATGCCTAAGTCTTAAAACT
ATACACACATAAACATTTGAAAGCCGTACATAGACTTAAAGGTAATGTAA
TAAATTTAATTAAATTAAATGTTAAAGGCAATTTGTAAAATACATTTGTT
AGCAATTTTTGTATAATTATAGTAAAAACCAGAGATGAAAAAAAGCACAA
AAAAAAGAAGATAGAATTAAACATAAAAGTAATACCCTAAGTTGTGTGTA
TAAAGCCAGATTAGTCCTAACCTAATTTATGTATGTTTATAAACAGAATA
CGATATGTAAAACTATATATATAAATATGATGTATTATGTGCTAAGTGTA
AACGATAAATGTATTGTAATTTGGCCATATTGATAGTTGAATATATATAA
ATCAAAGCAAAACTAATGTTTATTTAAAATCGAAACAAAAAATGGAAAGT
TGTATTAAATTTAATGGCAATCACCAGAAAAATACACAAAAAAAAATCAC
AAAAATAAATAAAAATAATTTATGAAGAAAAAAATATATATAAAAATACA
AAAAAAAAAAAAAAA

RE40104.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
grn-RA 3591 grn-RA 49..3507 1..3459 17280 99.9 Plus
grn-RB 4230 grn-RB 1874..4146 1187..3459 11350 99.9 Plus
grn-RB 4230 grn-RB 49..1235 1..1187 5935 100 Plus
pnr.b 2364 pnr.b 630..763 1187..1320 370 85 Plus
pnr.b 2364 pnr.b 867..952 1433..1518 190 81.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3973405..3975002 3449..1852 7930 99.7 Minus
chr3R 27901430 chr3R 4005372..4005867 740..245 2480 100 Minus
chr3R 27901430 chr3R 3993834..3994121 1028..741 1425 99.7 Minus
chr3R 27901430 chr3R 4007216..4007459 244..1 1220 100 Minus
chr3R 27901430 chr3R 3975306..3975495 1853..1664 950 100 Minus
chr3R 27901430 chr3R 3975585..3975771 1664..1478 935 100 Minus
chr3R 27901430 chr3R 3993375..3993537 1187..1025 815 100 Minus
chr3R 27901430 chr3R 3986966..3987113 1333..1186 740 100 Minus
chr3R 27901430 chr3R 3979292..3979438 1479..1333 735 100 Minus
chr3R 27901430 chr3R 11863636..11863769 1187..1320 355 84.3 Plus
chr3R 27901430 chr3R 11825242..11825366 1187..1311 250 80 Plus
chr3R 27901430 chr3R 11826379..11826519 1376..1516 225 77.3 Plus
chr3R 27901430 chr3R 11863935..11864020 1433..1518 190 81.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8147358..8148965 3459..1852 8025 99.9 Minus
3R 32079331 3R 8179355..8179850 740..245 2480 100 Minus
3R 32079331 3R 8167830..8168117 1028..741 1440 100 Minus
3R 32079331 3R 8181199..8181442 244..1 1220 100 Minus
3R 32079331 3R 8149269..8149458 1853..1664 950 100 Minus
3R 32079331 3R 8149547..8149733 1664..1478 935 100 Minus
3R 32079331 3R 8167371..8167533 1187..1025 815 100 Minus
3R 32079331 3R 8160963..8161110 1333..1186 740 100 Minus
3R 32079331 3R 8153256..8153402 1479..1333 735 100 Minus
3R 32079331 3R 16039052..16039185 1187..1320 370 85.1 Plus
3R 32079331 3R 16000639..16000763 1187..1311 250 80 Plus
3R 32079331 3R 16001776..16001916 1376..1516 225 77.3 Plus
3R 32079331 3R 16039351..16039436 1433..1518 190 81.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7888189..7889796 3459..1852 8025 99.9 Minus
3R 31820162 3R 7920186..7920681 740..245 2480 100 Minus
3R 31820162 3R 7908661..7908948 1028..741 1440 100 Minus
3R 31820162 3R 7922030..7922273 244..1 1220 100 Minus
3R 31820162 3R 7890100..7890289 1853..1664 950 100 Minus
3R 31820162 3R 7890378..7890564 1664..1478 935 100 Minus
3R 31820162 3R 7908202..7908364 1187..1025 815 100 Minus
3R 31820162 3R 7901794..7901941 1333..1186 740 100 Minus
3R 31820162 3R 7894087..7894233 1479..1333 735 100 Minus
3R 31820162 3R 15779883..15780016 1187..1320 370 85 Plus
3R 31820162 3R 15741470..15741594 1187..1311 250 80 Plus
3R 31820162 3R 15742643..15742747 1412..1516 210 80 Plus
3R 31820162 3R 15780182..15780267 1433..1518 190 81.3 Plus
Blast to na_te.dros performed 2019-03-16 05:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2288..2411 2865..2739 184 66.7 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 1876..2185 2662..2989 169 55 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6726..7104 2481..2860 163 53.7 Plus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 564..701 3308..3448 156 59.6 Plus
accord2 7650 accord2 QBERT 7650bp 6554..6619 3163..3097 134 68.7 Minus
S2 1735 S2 S2 1735bp 128..177 2805..2853 129 80.4 Plus
S2 1735 S2 S2 1735bp 1557..1606 2853..2805 129 80.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2403..2433 2217..2187 128 90.3 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 3883..4063 3249..3420 127 58.2 Plus
transib2 2844 transib2 TRANSIB2 2844bp 2604..2666 3289..3351 126 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1130..1181 2217..2168 120 73.1 Minus
accord2 7650 accord2 QBERT 7650bp 6981..7043 2878..2816 117 65.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2628..2671 2217..2172 117 76.1 Minus
1360 3409 1360 1360 3409bp 1136..1242 3335..3435 117 61.5 Plus
412 7567 412 412 7567bp 6954..7016 2538..2600 117 65.1 Plus

RE40104.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:50:44 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3973477..3975001 1853..3377 98 <- Minus
chr3R 3975307..3975494 1665..1852 100 <- Minus
chr3R 3975585..3975771 1478..1664 100 <- Minus
chr3R 3979294..3979437 1334..1477 100 <- Minus
chr3R 3986966..3987111 1188..1333 100 <- Minus
chr3R 3993375..3993534 1028..1187 100 <- Minus
chr3R 3993835..3994121 741..1027 99 <- Minus
chr3R 4005372..4005867 245..740 100 <- Minus
chr3R 4007216..4007459 1..244 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:33:42 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..1461 419..1879 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:19 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..1461 419..1879 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:29:17 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..1461 419..1879 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:32 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..1461 419..1879 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:51 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..1461 419..1879 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:33:41 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..3449 1..3449 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:19 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..3449 1..3449 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:17 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 3..3451 1..3449 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:32 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..3449 1..3449 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:51 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 3..3451 1..3449 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:44 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8149547..8149733 1478..1664 100 <- Minus
3R 8153258..8153401 1334..1477 100 <- Minus
3R 8160963..8161108 1188..1333 100 <- Minus
3R 8167371..8167530 1028..1187 100 <- Minus
3R 8149270..8149457 1665..1852 100 <- Minus
3R 8147368..8148964 1853..3449 100 <- Minus
3R 8167831..8168117 741..1027 100 <- Minus
3R 8179355..8179850 245..740 100 <- Minus
3R 8181199..8181442 1..244 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:44 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8149547..8149733 1478..1664 100 <- Minus
3R 8153258..8153401 1334..1477 100 <- Minus
3R 8160963..8161108 1188..1333 100 <- Minus
3R 8167371..8167530 1028..1187 100 <- Minus
3R 8149270..8149457 1665..1852 100 <- Minus
3R 8147368..8148964 1853..3449 100 <- Minus
3R 8167831..8168117 741..1027 100 <- Minus
3R 8179355..8179850 245..740 100 <- Minus
3R 8181199..8181442 1..244 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:44 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8149547..8149733 1478..1664 100 <- Minus
3R 8153258..8153401 1334..1477 100 <- Minus
3R 8160963..8161108 1188..1333 100 <- Minus
3R 8167371..8167530 1028..1187 100 <- Minus
3R 8149270..8149457 1665..1852 100 <- Minus
3R 8147368..8148964 1853..3449 100 <- Minus
3R 8167831..8168117 741..1027 100 <- Minus
3R 8179355..8179850 245..740 100 <- Minus
3R 8181199..8181442 1..244 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:17 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3973090..3974686 1853..3449 100 <- Minus
arm_3R 3974992..3975179 1665..1852 100 <- Minus
arm_3R 3975269..3975455 1478..1664 100 <- Minus
arm_3R 3978980..3979123 1334..1477 100 <- Minus
arm_3R 3986685..3986830 1188..1333 100 <- Minus
arm_3R 3993093..3993252 1028..1187 100 <- Minus
arm_3R 3993553..3993839 741..1027 100 <- Minus
arm_3R 4005077..4005572 245..740 100 <- Minus
arm_3R 4006921..4007164 1..244 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:13:59 Download gff for RE40104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7922030..7922273 1..244 100   Minus
3R 7888199..7889795 1853..3449 100 <- Minus
3R 7890101..7890288 1665..1852 100 <- Minus
3R 7890378..7890564 1478..1664 100 <- Minus
3R 7894089..7894232 1334..1477 100 <- Minus
3R 7901794..7901939 1188..1333 100 <- Minus
3R 7908202..7908361 1028..1187 100 <- Minus
3R 7908662..7908948 741..1027 100 <- Minus
3R 7920186..7920681 245..740 100 <- Minus

RE40104.pep Sequence

Translation from 418 to 1878

> RE40104.pep
MDMTSTAEAAARSWYDSPRLGGGGSSGGGNGGGVSPQTNGLGSAGSSLAH
SHHSLSSGASSAGSSVGVGSALGGGGGSGLDTSDMSAFYALESNGHHRRY
YPSYHQHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQ
FACPQEPQVEHKLGQMGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPS
EYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTS
TPKQREEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIK
PKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYK
LHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKP
LDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGL
QGGFSTAGSLSGAVVPHSQPYHLGLSSMGTWRTDYT*

RE40104.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16170-PA 703 GF16170-PA 451..703 237..486 1155 92.5 Plus
Dana\GF16170-PA 703 GF16170-PA 1..259 1..256 936 86.2 Plus
Dana\GF11891-PA 551 GF11891-PA 174..285 254..371 506 76.3 Plus
Dana\GF11880-PA 710 GF11880-PA 457..559 260..371 287 49.6 Plus
Dana\GF11857-PA 1271 GF11857-PA 810..885 312..386 274 67.1 Plus
Dana\GF15767-PA 810 GF15767-PA 647..727 300..379 208 52.4 Plus
Dana\GF11891-PA 551 GF11891-PA 229..294 255..322 162 45.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17473-PA 487 GG17473-PA 1..487 1..486 2526 99.4 Plus
Dere\GG16973-PA 535 GG16973-PA 167..275 257..371 507 77.4 Plus
Dere\GG16970-PA 749 GG16970-PA 441..596 201..371 271 38.6 Plus
Dere\GG16969-PA 1244 GG16969-PA 781..889 303..402 269 51.3 Plus
Dere\GG10108-PA 838 GG10108-PA 670..760 300..389 211 47.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19248-PA 696 GH19248-PA 460..696 250..486 1156 96.2 Plus
Dgri\GH19248-PA 696 GH19248-PA 1..255 1..256 948 85.4 Plus
Dgri\GH18759-PA 528 GH18759-PA 157..265 257..371 501 76.5 Plus
Dgri\GH18757-PA 978 GH18757-PA 497..572 303..380 269 63.4 Plus
Dgri\GH18758-PA 749 GH18758-PA 454..575 236..371 257 44.1 Plus
Dgri\GH13551-PA 911 GH13551-PA 746..807 320..379 209 64.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
grn-PA 486 CG9656-PA 1..486 1..486 2639 100 Plus
grn-PC 712 CG9656-PC 1..269 1..269 1378 95.9 Plus
grn-PB 699 CG9656-PB 1..269 1..269 1378 95.9 Plus
grn-PC 712 CG9656-PC 312..699 43..486 1309 62.7 Plus
grn-PB 699 CG9656-PB 312..699 43..486 1309 62.7 Plus
pnr-PC 537 CG3978-PC 147..299 239..405 509 61.1 Plus
pnr-PD 488 CG3978-PD 95..250 239..405 505 60.5 Plus
pnr-PB 488 CG3978-PB 95..250 239..405 505 60.5 Plus
pnr-PA 540 CG3978-PA 147..302 239..405 505 60.5 Plus
srp-PE 731 CG3992-PE 126..330 172..380 502 51.7 Plus
srp-PB 1249 CG3992-PB 644..848 172..380 502 51.7 Plus
GATAe-PC 731 CG10278-PC 267..574 50..371 298 30.7 Plus
GATAe-PB 731 CG10278-PB 267..574 50..371 298 30.7 Plus
GATAe-PA 746 CG10278-PA 282..589 50..371 298 30.7 Plus
srp-PG 469 CG3992-PG 276..455 312..485 270 42.1 Plus
srp-PF 746 CG3992-PF 276..345 312..380 261 71.4 Plus
srp-PD 746 CG3992-PD 276..345 312..380 261 71.4 Plus
srp-PA 1264 CG3992-PA 794..863 312..380 261 71.4 Plus
GATAd-PC 842 CG5034-PC 672..762 300..389 211 48.9 Plus
GATAd-PB 842 CG5034-PB 672..762 300..389 211 48.9 Plus
GATAd-PA 842 CG5034-PA 672..762 300..389 211 48.9 Plus
srp-PG 469 CG3992-PG 89..469 15..472 158 22.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24284-PA 378 GI24284-PA 1..378 111..486 1794 93.1 Plus
Dmoj\GI22649-PA 517 GI22649-PA 158..269 257..371 501 75.7 Plus
Dmoj\GI22648-PA 750 GI22648-PA 448..577 232..371 275 44 Plus
Dmoj\GI22647-PA 1005 GI22647-PA 485..561 303..381 264 61.4 Plus
Dmoj\GI18290-PA 469 GI18290-PA 407..458 320..371 201 63.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23278-PA 705 GL23278-PA 471..705 252..486 1154 97 Plus
Dper\GL23278-PA 705 GL23278-PA 1..259 1..256 966 87.8 Plus
Dper\GL12215-PA 532 GL12215-PA 156..264 257..371 508 77.4 Plus
Dper\GL12213-PA 760 GL12213-PA 490..592 262..371 265 46.4 Plus
Dper\GL12212-PA 1126 GL12212-PA 821..883 303..371 251 66.7 Plus
Dper\GL19159-PA 803 GL19159-PA 651..721 316..383 204 50.7 Plus
Dper\GL19159-PA 803 GL19159-PA 656..728 261..327 154 41.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21945-PB 488 GA21945-PB 1..488 1..486 2105 92.9 Plus
Dpse\GA21945-PA 699 GA21945-PA 465..699 252..486 1153 97 Plus
Dpse\GA21945-PA 699 GA21945-PA 1..258 1..256 966 87.7 Plus
Dpse\GA17817-PA 532 GA17817-PA 156..264 257..371 508 77.4 Plus
Dpse\GA17817-PB 496 GA17817-PB 114..228 254..371 503 75.4 Plus
Dpse\GA26230-PB 1295 GA26230-PB 757..865 257..371 490 73.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26366-PA 703 GM26366-PA 1..256 1..256 977 99.6 Plus
Dsec\GM24279-PA 494 GM24279-PA 165..273 257..371 508 77.4 Plus
Dsec\GM24276-PA 733 GM24276-PA 478..580 260..371 283 47.3 Plus
Dsec\GM24275-PA 1238 GM24275-PA 779..841 303..371 264 71 Plus
Dsec\GM18170-PA 844 GM18170-PA 676..766 300..389 213 48.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20889-PA 292 GD20889-PA 112..292 306..486 954 99.4 Plus
Dsim\GD19066-PA 736 GD19066-PA 477..579 260..371 285 47.3 Plus
Dsim\GD19064-PA 696 GD19064-PA 569..631 303..371 262 71 Plus
Dsim\GD23678-PA 844 GD23678-PA 676..766 300..389 213 48.9 Plus
Dsim\GD20889-PA 292 GD20889-PA 121..171 255..305 156 49 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23061-PA 686 GJ23061-PA 1..255 1..256 920 84.9 Plus
Dvir\GJ23378-PA 520 GJ23378-PA 158..266 257..371 502 76.5 Plus
Dvir\GJ23376-PA 1236 GJ23376-PA 700..775 303..380 272 64.6 Plus
Dvir\GJ23377-PA 771 GJ23377-PA 499..608 258..371 263 48.2 Plus
Dvir\GJ18119-PA 860 GJ18119-PA 693..758 316..379 205 57.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12883-PA 491 GK12883-PA 1..491 1..486 2008 91.7 Plus
Dwil\GK13255-PA 550 GK13255-PA 161..269 257..371 505 77.4 Plus
Dwil\GK13254-PA 746 GK13254-PA 472..575 262..371 271 49.1 Plus
Dwil\GK22843-PA 1047 GK22843-PA 710..772 303..371 266 69.6 Plus
Dwil\GK18561-PA 858 GK18561-PA 698..758 320..380 199 57.4 Plus
Dwil\GK13254-PA 746 GK13254-PA 516..562 252..298 162 55.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24873-PA 707 GE24873-PA 1..260 1..256 962 96.2 Plus
Dyak\GE24361-PA 540 GE24361-PA 171..279 257..371 506 77.4 Plus
Dyak\GE24358-PA 738 GE24358-PA 427..585 198..371 285 39.7 Plus
Dyak\GE24357-PA 1272 GE24357-PA 795..857 303..371 263 69.6 Plus
Dyak\GE18923-PA 838 GE18923-PA 670..760 300..389 212 48.9 Plus

RE40104.hyp Sequence

Translation from 418 to 1878

> RE40104.hyp
MDMTSTAEAAARSWYDSPRLGGGGSSGGGNGGGVSPQTNGLGSAGSSLAH
SHHSLSSGASSAGSSVGVGSALGGGGGSGLDTSDMSAFYALESNGHHRRY
YPSYHQHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQ
FACPQEPQVEHKLGQMGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPS
EYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTS
TPKQREEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIK
PKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYK
LHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKP
LDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGL
QGGFSTAGSLSGAVVPHSQPYHLGLSSMGTWRTDYT*

RE40104.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
grn-PA 486 CG9656-PA 1..486 1..486 2639 100 Plus
grn-PB 699 CG9656-PB 1..269 1..269 1378 95.9 Plus
grn-PC 712 CG9656-PC 1..269 1..269 1378 95.9 Plus
grn-PB 699 CG9656-PB 312..699 43..486 1309 62.7 Plus
grn-PC 712 CG9656-PC 312..699 43..486 1309 62.7 Plus
pnr-PC 537 CG3978-PC 147..299 239..405 509 61.1 Plus
pnr-PD 488 CG3978-PD 95..250 239..405 505 60.5 Plus