Clone RE40156 Report

Search the DGRC for RE40156

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:401
Well:56
Vector:pFlc-1
Associated Gene/TranscriptCG14598-RA
Protein status:RE40156.pep: gold
Preliminary Size:690
Sequenced Size:1240

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14598 2001-12-14 Blastp of sequenced clone
CG14598 2002-01-01 Sim4 clustering to Release 2
CG14598 2003-01-01 Sim4 clustering to Release 3
CG14598 2008-04-29 Release 5.5 accounting
CG14598 2008-08-15 Release 5.9 accounting
CG14598 2008-12-18 5.12 accounting

Clone Sequence Records

RE40156.complete Sequence

1240 bp (1240 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071371

> RE40156.complete
AGTTCGTTCAAAAATTTCAAAGTGTTCGGTACGGGACACAAGTTTTCCGC
CTTAAATAAACAAATAGGATTCCTAGCAAATATGTCACTGAAATACTTAC
TCATTGCTTGTGCAGTGCTGATCGGATTGTGTGGAGCTGATGTGTCAGAA
ATAAAGGCGGTTAAAGTGGATCTGCCTTTCAATGACTTGCTACCACCGCT
GCTGGATGAAGTGAGCACCACGACGACAACGACGACGACAACGACAACCA
CAACGACGACCACAACGGAGAAGCCAGCCACAACGCTGGCCACAAAGCCA
ACCAAGAAATCGTACTACCAGAAGCCAGCTCAGCTGGCAAAGGAGGATAA
GTTGAAGACCATTGTCATCAAGCAGGATGTTTCACAGCTCCCTTTGGATC
TACTGCCACCTTTCGAAGACGAGGTCAAGCCGGCGGAGGACAAGCTGCGG
CCAGTGGTTAATACTACGCCAAAACCCGTGGTTAGGATCTCTCAGCCGTC
TGTGCTCAAGGTCACTCCAAAGGCTGTTCCCAAGGTCACCCCGCCGCCTG
CTCCACGTCCGCAGTACTCTGTTCAACCAGCCCTAGCATCCCGCCCACAA
TACTCCGTTCATCCTGCTCCTCAAGCGATACACCCTCAGCCCACCCGTGC
TTCTGGTTTCGGAAGTGGATTCCAGTCCCGTTTCTCAAACTACTTCCTCA
CCAGTACCCCTCGACCCAGACGCGGTCCCCTGCCCACTATCACCCCTTTT
CCACGCTTCGTCAGACTGTAGGAATCCATTTAATTAGATTAGATAAGCAC
CATTCAAAGGCCGACTTAAAATATAAAATAAATTAGATACGACACAACTG
AGATAATGAGTGGAAACTATGCGGTATTATTTAAAAGCGACTGTTGAAGC
ATGAATTCACAACAAAGTATTCGAAGATTTCAAATGTTGATGGATTAAAT
AATTTATGAATGCACAAAAGTGACCATTTCGAATCATAGAGGCAACGCCA
TCTGTTGCTACTTCGTTATGTGAGGTTATCTGTTTTAAATTAACACCTTT
GTCAAGGGAAAAGTGGAAGAAGCGCAAAATTAATTCCTAAAATAATATTT
ATCGTAAAGGAAATTCATACACCCTTCTTAGGGACCAATGGATAGCGTTT
TACCTTTTCCAGAGCTTCATCGGCATGTTTTTAATTGTAGTACATATATT
TAAAATAAACTGCTAATGCAATGCAAAAAAAAAAAAAAAA

RE40156.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14598-RA 1419 CG14598-RA 94..1329 1..1236 6150 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3266888..3268014 97..1223 5530 99.4 Plus
chr3R 27901430 chr3R 3265805..3265900 1..96 480 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7440849..7441988 97..1236 5670 99.8 Plus
3R 32079331 3R 7439766..7439861 1..96 480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7181680..7182819 97..1236 5670 99.8 Plus
3R 31820162 3R 7180597..7180692 1..96 480 100 Plus
Blast to na_te.dros performed 2019-03-16 03:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 2564..2622 1148..1208 110 68.9 Plus

RE40156.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:30:46 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3265805..3265900 1..96 100 -> Plus
chr3R 3266888..3268014 97..1224 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:14:58 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 1..690 82..771 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:01 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 1..690 82..771 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:46:08 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 1..690 82..771 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:13 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 1..690 82..771 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:33 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 1..690 82..771 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:42:32 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 1..1223 1..1224 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:01 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 1..1223 1..1224 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:46:08 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 7..1229 1..1224 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:14 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 1..1223 1..1224 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:33 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
CG14598-RA 7..1229 1..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:46 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7439766..7439861 1..96 100 -> Plus
3R 7440849..7441975 97..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:46 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7439766..7439861 1..96 100 -> Plus
3R 7440849..7441975 97..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:46 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7439766..7439861 1..96 100 -> Plus
3R 7440849..7441975 97..1224 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:46:08 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3265488..3265583 1..96 100 -> Plus
arm_3R 3266571..3267697 97..1224 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:13:38 Download gff for RE40156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7181680..7182806 97..1224 99   Plus
3R 7180597..7180692 1..96 100 -> Plus

RE40156.hyp Sequence

Translation from 0 to 770

> RE40156.hyp
SSFKNFKVFGTGHKFSALNKQIGFLANMSLKYLLIACAVLIGLCGADVSE
IKAVKVDLPFNDLLPPLLDEVSTTTTTTTTTTTTTTTTTEKPATTLATKP
TKKSYYQKPAQLAKEDKLKTIVIKQDVSQLPLDLLPPFEDEVKPAEDKLR
PVVNTTPKPVVRISQPSVLKVTPKAVPKVTPPPAPRPQYSVQPALASRPQ
YSVHPAPQAIHPQPTRASGFGSGFQSRFSNYFLTSTPRPRRGPLPTITPF
PRFVRL*

RE40156.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14598-PA 229 CG14598-PA 1..229 28..256 1182 100 Plus

RE40156.pep Sequence

Translation from 81 to 770

> RE40156.pep
MSLKYLLIACAVLIGLCGADVSEIKAVKVDLPFNDLLPPLLDEVSTTTTT
TTTTTTTTTTTTEKPATTLATKPTKKSYYQKPAQLAKEDKLKTIVIKQDV
SQLPLDLLPPFEDEVKPAEDKLRPVVNTTPKPVVRISQPSVLKVTPKAVP
KVTPPPAPRPQYSVQPALASRPQYSVHPAPQAIHPQPTRASGFGSGFQSR
FSNYFLTSTPRPRRGPLPTITPFPRFVRL*

RE40156.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17677-PA 225 GF17677-PA 1..225 1..229 532 57 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14097-PA 223 GG14097-PA 1..223 1..229 782 81.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18309-PA 196 GH18309-PA 1..195 13..228 216 34.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14598-PA 229 CG14598-PA 1..229 1..229 1182 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24121-PA 190 GI24121-PA 1..189 1..228 205 35.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12446-PA 157 GL12446-PA 1..45 1..43 168 77.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13104-PA 227 GA13104-PA 1..226 1..228 469 53.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10963-PA 228 GM10963-PA 1..228 1..229 913 92.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19938-PA 227 GD19938-PA 1..227 1..229 839 90.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10943-PA 204 GJ10943-PA 1..204 1..229 185 35.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12013-PA 247 GK12013-PA 17..247 15..228 348 46.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24931-PA 227 GE24931-PA 1..227 1..229 831 81 Plus
Dyak\GE11182-PA 234 GE11182-PA 1..234 1..229 810 77.9 Plus