BDGP Sequence Production Resources |
Search the DGRC for RE40156
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 401 |
Well: | 56 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14598-RA |
Protein status: | RE40156.pep: gold |
Preliminary Size: | 690 |
Sequenced Size: | 1240 |
Gene | Date | Evidence |
---|---|---|
CG14598 | 2001-12-14 | Blastp of sequenced clone |
CG14598 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14598 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14598 | 2008-04-29 | Release 5.5 accounting |
CG14598 | 2008-08-15 | Release 5.9 accounting |
CG14598 | 2008-12-18 | 5.12 accounting |
1240 bp (1240 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071371
> RE40156.complete AGTTCGTTCAAAAATTTCAAAGTGTTCGGTACGGGACACAAGTTTTCCGC CTTAAATAAACAAATAGGATTCCTAGCAAATATGTCACTGAAATACTTAC TCATTGCTTGTGCAGTGCTGATCGGATTGTGTGGAGCTGATGTGTCAGAA ATAAAGGCGGTTAAAGTGGATCTGCCTTTCAATGACTTGCTACCACCGCT GCTGGATGAAGTGAGCACCACGACGACAACGACGACGACAACGACAACCA CAACGACGACCACAACGGAGAAGCCAGCCACAACGCTGGCCACAAAGCCA ACCAAGAAATCGTACTACCAGAAGCCAGCTCAGCTGGCAAAGGAGGATAA GTTGAAGACCATTGTCATCAAGCAGGATGTTTCACAGCTCCCTTTGGATC TACTGCCACCTTTCGAAGACGAGGTCAAGCCGGCGGAGGACAAGCTGCGG CCAGTGGTTAATACTACGCCAAAACCCGTGGTTAGGATCTCTCAGCCGTC TGTGCTCAAGGTCACTCCAAAGGCTGTTCCCAAGGTCACCCCGCCGCCTG CTCCACGTCCGCAGTACTCTGTTCAACCAGCCCTAGCATCCCGCCCACAA TACTCCGTTCATCCTGCTCCTCAAGCGATACACCCTCAGCCCACCCGTGC TTCTGGTTTCGGAAGTGGATTCCAGTCCCGTTTCTCAAACTACTTCCTCA CCAGTACCCCTCGACCCAGACGCGGTCCCCTGCCCACTATCACCCCTTTT CCACGCTTCGTCAGACTGTAGGAATCCATTTAATTAGATTAGATAAGCAC CATTCAAAGGCCGACTTAAAATATAAAATAAATTAGATACGACACAACTG AGATAATGAGTGGAAACTATGCGGTATTATTTAAAAGCGACTGTTGAAGC ATGAATTCACAACAAAGTATTCGAAGATTTCAAATGTTGATGGATTAAAT AATTTATGAATGCACAAAAGTGACCATTTCGAATCATAGAGGCAACGCCA TCTGTTGCTACTTCGTTATGTGAGGTTATCTGTTTTAAATTAACACCTTT GTCAAGGGAAAAGTGGAAGAAGCGCAAAATTAATTCCTAAAATAATATTT ATCGTAAAGGAAATTCATACACCCTTCTTAGGGACCAATGGATAGCGTTT TACCTTTTCCAGAGCTTCATCGGCATGTTTTTAATTGTAGTACATATATT TAAAATAAACTGCTAATGCAATGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14598-RA | 1419 | CG14598-RA | 94..1329 | 1..1236 | 6150 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 2564..2622 | 1148..1208 | 110 | 68.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 3265805..3265900 | 1..96 | 100 | -> | Plus |
chr3R | 3266888..3268014 | 97..1224 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 1..690 | 82..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 1..690 | 82..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 1..690 | 82..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 1..690 | 82..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 1..690 | 82..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 1..1223 | 1..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 1..1223 | 1..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 7..1229 | 1..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 1..1223 | 1..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14598-RA | 7..1229 | 1..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7439766..7439861 | 1..96 | 100 | -> | Plus |
3R | 7440849..7441975 | 97..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7439766..7439861 | 1..96 | 100 | -> | Plus |
3R | 7440849..7441975 | 97..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7439766..7439861 | 1..96 | 100 | -> | Plus |
3R | 7440849..7441975 | 97..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 3265488..3265583 | 1..96 | 100 | -> | Plus |
arm_3R | 3266571..3267697 | 97..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7181680..7182806 | 97..1224 | 99 | Plus | |
3R | 7180597..7180692 | 1..96 | 100 | -> | Plus |
Translation from 0 to 770
> RE40156.hyp SSFKNFKVFGTGHKFSALNKQIGFLANMSLKYLLIACAVLIGLCGADVSE IKAVKVDLPFNDLLPPLLDEVSTTTTTTTTTTTTTTTTTEKPATTLATKP TKKSYYQKPAQLAKEDKLKTIVIKQDVSQLPLDLLPPFEDEVKPAEDKLR PVVNTTPKPVVRISQPSVLKVTPKAVPKVTPPPAPRPQYSVQPALASRPQ YSVHPAPQAIHPQPTRASGFGSGFQSRFSNYFLTSTPRPRRGPLPTITPF PRFVRL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14598-PA | 229 | CG14598-PA | 1..229 | 28..256 | 1182 | 100 | Plus |
Translation from 81 to 770
> RE40156.pep MSLKYLLIACAVLIGLCGADVSEIKAVKVDLPFNDLLPPLLDEVSTTTTT TTTTTTTTTTTTEKPATTLATKPTKKSYYQKPAQLAKEDKLKTIVIKQDV SQLPLDLLPPFEDEVKPAEDKLRPVVNTTPKPVVRISQPSVLKVTPKAVP KVTPPPAPRPQYSVQPALASRPQYSVHPAPQAIHPQPTRASGFGSGFQSR FSNYFLTSTPRPRRGPLPTITPFPRFVRL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17677-PA | 225 | GF17677-PA | 1..225 | 1..229 | 532 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14097-PA | 223 | GG14097-PA | 1..223 | 1..229 | 782 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18309-PA | 196 | GH18309-PA | 1..195 | 13..228 | 216 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14598-PA | 229 | CG14598-PA | 1..229 | 1..229 | 1182 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24121-PA | 190 | GI24121-PA | 1..189 | 1..228 | 205 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12446-PA | 157 | GL12446-PA | 1..45 | 1..43 | 168 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13104-PA | 227 | GA13104-PA | 1..226 | 1..228 | 469 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10963-PA | 228 | GM10963-PA | 1..228 | 1..229 | 913 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19938-PA | 227 | GD19938-PA | 1..227 | 1..229 | 839 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10943-PA | 204 | GJ10943-PA | 1..204 | 1..229 | 185 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12013-PA | 247 | GK12013-PA | 17..247 | 15..228 | 348 | 46.9 | Plus |