Clone RE40325 Report

Search the DGRC for RE40325

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:403
Well:25
Vector:pFlc-1
Associated Gene/TranscriptCG30031-RA
Protein status:RE40325.pep: gold
Preliminary Size:742
Sequenced Size:826

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30028 2001-12-17 Blastp of sequenced clone
CG18211 2002-01-01 Sim4 clustering to Release 2
CG30028 2003-01-01 Sim4 clustering to Release 3
CG30031 2003-01-01 Sim4 clustering to Release 3
deltaTry 2008-04-29 Release 5.5 accounting
CG30031 2008-08-15 Release 5.9 accounting
CG30031 2008-12-18 5.12 accounting

Clone Sequence Records

RE40325.complete Sequence

826 bp (826 high quality bases) assembled on 2001-12-17

GenBank Submission: AY075487

> RE40325.complete
ATTGGATTCGCACCATGCTGAAGTTCGTGATCTTGTTGTCTGCAGTAGCC
TGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGATGG
CCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCAGA
TCTCCCTGCAGCGCAGTGGAAGCCACTCCTGCGGTGGATCCATCTACTCC
AGCAACGTCATCGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCTTC
CGTCCTGCAGATCCGTGCTGGATCCAGCTACTGGAGCTCCGGCGGTGTCA
CCTTCTCTGTGTCCTCCTTCAAGAACCACGAGGGCTACAACGCCAACACC
ATGGTCAACGACATTGCCATCATCAAGATCAACGGCGCCCTGACCTTCAG
CTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGGCG
CTGCGGCCTCCGTCTCCGGATGGGGCACTCTCTCCTACGGATCCAGCTCC
ATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGCCA
GTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAGCACCATGA
TCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTGGC
CCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATACGG
ATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCTCC
GCTCCTGGGTTATTAGCAATGCCTAAGAAGTATGCGAAATAAATTTCAGT
TTGGATATTGAAAAAAAAAAAAAAAA

RE40325.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTry-RA 810 gammaTry-RA 1..809 1..809 4045 100 Plus
deltaTry-RA 796 deltaTry-RA 1..779 15..793 3865 99.7 Plus
CG30031-RA 765 CG30031-RA 1..765 12..776 3825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7236512..7237320 809..1 4045 100 Minus
chr2R 21145070 chr2R 7238264..7239072 1..809 4045 100 Plus
chr2R 21145070 chr2R 7242769..7243561 1..793 3935 99.7 Plus
chr2R 21145070 chr2R 7241031..7241824 794..1 3835 98.9 Minus
chr2R 21145070 chr2R 7231798..7232544 760..14 2625 90.1 Minus
chr2R 21145070 chr2R 7233786..7234572 8..794 2465 87.5 Plus
chr2R 21145070 chr2R 7233146..7233465 367..48 325 73.4 Minus
chr2R 21145070 chr2R 7232771..7232893 742..620 300 82.9 Minus
chr2R 21145070 chr2R 9321707..9321799 141..233 180 79.6 Plus
chr2R 21145070 chr2R 9322160..9322261 594..695 180 78.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:54:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11349061..11349869 809..1 4045 100 Minus
2R 25286936 2R 11350813..11351621 1..809 4045 100 Plus
2R 25286936 2R 11355319..11356111 1..793 3935 99.7 Plus
2R 25286936 2R 11353580..11354373 794..1 3835 98.9 Minus
2R 25286936 2R 11344347..11345093 760..14 2640 90.2 Minus
2R 25286936 2R 11346335..11347121 8..794 2465 87.5 Plus
2R 25286936 2R 11345695..11346014 367..48 325 73.4 Minus
2R 25286936 2R 11345320..11345442 742..620 300 82.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11352012..11352820 1..809 4045 100 Plus
2R 25260384 2R 11350260..11351068 809..1 4045 100 Minus
2R 25260384 2R 11356518..11357310 1..793 3935 99.7 Plus
2R 25260384 2R 11354779..11355572 794..1 3835 98.8 Minus
2R 25260384 2R 11345546..11345918 760..388 1430 92.2 Minus
2R 25260384 2R 11347916..11348320 390..794 1290 87.9 Plus
2R 25260384 2R 11346007..11346292 299..14 1130 93 Minus
2R 25260384 2R 11347534..11347825 8..299 1085 91.4 Plus
2R 25260384 2R 11346556..11346641 705..620 280 88.3 Minus
2R 25260384 2R 11347838..11347890 312..364 235 96.2 Plus
2R 25260384 2R 11345932..11345994 374..312 225 90.4 Minus
2R 25260384 2R 13435549..13435641 141..233 180 79.5 Plus
2R 25260384 2R 11346894..11346947 367..314 180 88.8 Minus
2R 25260384 2R 13436002..13436103 594..695 165 77.4 Plus
Blast to na_te.dros performed on 2019-03-15 14:13:22 has no hits.

RE40325.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:14:33 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7238264..7239072 1..810 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:04 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 1..762 15..776 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:27:13 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTry-RA 1..762 15..776 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:24:18 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
deltaTry-RA 1..762 15..776 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:59 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 1..762 15..776 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:55:12 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 1..762 15..776 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:46 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTry-RA 1..809 1..810 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:27:13 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTry-RA 1..809 1..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:24:18 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTry-RA 2..810 1..809 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:59 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTry-RA 1..809 1..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:55:12 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 3..811 1..809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:33 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11350813..11351621 1..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:33 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11350813..11351621 1..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:14:33 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11350813..11351621 1..810 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:24:18 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7238318..7239126 1..810 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:35:25 Download gff for RE40325.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11352012..11352820 1..810 99   Plus

RE40325.hyp Sequence

Translation from 2 to 775

> RE40325.hyp
WIRTMLKFVILLSAVACALGGTVPEGLLPQLDGRIVGGSATTISSFPWQI
SLQRSGSHSCGGSIYSSNVIVTAAHCLQSVSASVLQIRAGSSYWSSGGVT
FSVSSFKNHEGYNANTMVNDIAIIKINGALTFSSTIKAIGLASSNPANGA
AASVSGWGTLSYGSSSIPSQLQYVNVNIVSQSQCASSTYGYGSQIRSTMI
CAAASGKDACQGDSGGPLVSGGVLVGVVSWGYGCAYSNYPGVYADVAALR
SWVISNA*

RE40325.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTry-PA 253 CG30028-PA 1..253 5..257 1291 100 Plus
deltaTry-PA 253 CG12351-PA 1..253 5..257 1291 100 Plus
CG30031-PA 253 CG30031-PA 1..253 5..257 1291 100 Plus
CG30025-PA 253 CG30025-PA 1..253 5..257 1288 99.6 Plus
alphaTry-PA 256 CG18444-PA 1..253 5..257 1178 88.9 Plus

RE40325.pep Sequence

Translation from 14 to 775

> RE40325.pep
MLKFVILLSAVACALGGTVPEGLLPQLDGRIVGGSATTISSFPWQISLQR
SGSHSCGGSIYSSNVIVTAAHCLQSVSASVLQIRAGSSYWSSGGVTFSVS
SFKNHEGYNANTMVNDIAIIKINGALTFSSTIKAIGLASSNPANGAAASV
SGWGTLSYGSSSIPSQLQYVNVNIVSQSQCASSTYGYGSQIRSTMICAAA
SGKDACQGDSGGPLVSGGVLVGVVSWGYGCAYSNYPGVYADVAALRSWVI
SNA*

RE40325.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12546-PA 256 GF12546-PA 1..253 1..253 1063 84.6 Plus
Dana\GF12547-PA 253 GF12547-PA 1..253 1..253 1059 87.7 Plus
Dana\GF12403-PA 256 GF12403-PA 1..253 1..253 1054 85.4 Plus
Dana\GF12402-PA 256 GF12402-PA 1..253 1..253 879 61.7 Plus
Dana\GF13692-PA 261 GF13692-PA 18..255 16..250 765 63 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\alphaTry-PA 256 GG22661-PA 1..253 1..253 1053 87 Plus
Dere\betaTry-PA 253 GG20194-PA 1..253 1..253 1052 89.3 Plus
Dere\gammaTry-PA 253 GG22658-PA 1..253 1..253 1037 87 Plus
Dere\deltaTry-PA 253 GG20195-PA 1..253 1..253 1030 86.2 Plus
Dere\epsilonTry-PA 256 GG22660-PA 1..253 1..253 873 62.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22926-PA 256 GH22926-PA 1..253 1..253 1049 79.4 Plus
Dgri\GH22924-PA 256 GH22924-PA 1..253 1..253 1044 78.7 Plus
Dgri\GH22925-PA 254 GH22925-PA 1..253 1..253 1005 80.6 Plus
Dgri\GH22927-PA 256 GH22927-PA 1..253 1..253 988 79.4 Plus
Dgri\GH22866-PA 255 GH22866-PA 1..252 1..253 879 63.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTry-PA 253 CG30028-PA 1..253 1..253 1291 100 Plus
deltaTry-PA 253 CG12351-PA 1..253 1..253 1291 100 Plus
CG30031-PA 253 CG30031-PA 1..253 1..253 1291 100 Plus
CG30025-PA 253 CG30025-PA 1..253 1..253 1288 99.6 Plus
alphaTry-PA 256 CG18444-PA 1..253 1..253 1178 88.9 Plus
betaTry-PB 253 CG18211-PB 1..253 1..253 1158 87.7 Plus
betaTry-PA 253 CG18211-PA 1..253 1..253 1158 87.7 Plus
epsilonTry-PA 256 CG18681-PA 1..249 1..249 848 63.1 Plus
Ser8-PA 260 CG4812-PA 3..254 2..250 743 58.5 Plus
CG17571-PB 258 CG17571-PB 4..252 1..250 633 51 Plus
CG17571-PA 258 CG17571-PA 4..252 1..250 633 51 Plus
thetaTry-PA 262 CG12385-PA 1..257 1..251 559 45.9 Plus
iotaTry-PA 252 CG7754-PA 26..249 29..253 553 45.1 Plus
CG17239-PB 248 CG17239-PB 3..238 2..250 529 44.2 Plus
CG17239-PA 248 CG17239-PA 3..238 2..250 529 44.2 Plus
Ser12-PA 245 CG17240-PA 2..240 1..251 487 42.9 Plus
CG11192-PB 279 CG11192-PB 5..259 3..249 470 40.6 Plus
lambdaTry-PA 272 CG12350-PA 7..257 5..250 468 42 Plus
zetaTry-PA 280 CG12387-PA 13..273 7..249 463 45.4 Plus
Try29F-PD 267 CG9564-PD 25..263 11..251 458 42.4 Plus
Try29F-PC 267 CG9564-PC 25..263 11..251 458 42.4 Plus
CG13430-PB 267 CG13430-PB 29..259 28..249 453 44 Plus
CG13430-PA 267 CG13430-PA 29..259 28..249 453 44 Plus
CG31954-PA 277 CG31954-PA 40..271 20..249 437 43.8 Plus
CG32269-PB 332 CG32269-PB 104..324 26..248 437 40.2 Plus
CG32269-PA 332 CG32269-PA 104..324 26..248 437 40.2 Plus
CG31681-PA 264 CG31681-PA 5..249 7..249 435 40.8 Plus
etaTry-PA 262 CG12386-PA 1..254 1..249 433 43.3 Plus
Send1-PA 255 CG17012-PA 8..241 7..251 426 41.9 Plus
CG8299-PA 260 CG8299-PA 28..256 31..253 426 40.3 Plus
CG7829-PA 253 CG7829-PA 9..245 5..249 422 39.5 Plus
Send2-PA 239 CG18125-PA 6..227 4..251 420 39.8 Plus
CG9676-PA 251 CG9676-PA 15..249 22..253 412 41.1 Plus
CG32270-PA 259 CG32270-PA 18..254 18..252 411 39.3 Plus
CG3650-PA 249 CG3650-PA 21..244 26..250 404 38.5 Plus
CG17234-PA 251 CG17234-PA 18..245 22..251 403 39.3 Plus
CG32271-PA 248 CG32271-PA 20..242 26..249 399 36 Plus
CG10405-PB 268 CG10405-PB 11..262 6..249 391 37.5 Plus
CG34458-PA 257 CG34458-PA 29..255 28..253 389 37.7 Plus
CG11836-PI 281 CG11836-PI 44..273 30..252 383 36.9 Plus
CG11836-PJ 333 CG11836-PJ 96..325 30..252 383 36.9 Plus
CG8172-PD 371 CG8172-PD 125..362 30..249 374 35.4 Plus
CG8172-PE 545 CG8172-PE 299..536 30..249 374 35.4 Plus
CG8172-PF 561 CG8172-PF 315..552 30..249 374 35.4 Plus
CG33159-PA 257 CG33159-PA 25..243 30..246 370 35.9 Plus
Phae1-PB 270 CG16996-PB 33..266 28..252 368 36.8 Plus
Phae1-PA 270 CG16996-PA 33..266 28..252 368 36.8 Plus
CG1304-PA 260 CG1304-PA 4..257 2..253 364 35.1 Plus
kappaTry-PC 263 CG12388-PC 9..253 14..249 364 35.7 Plus
CG3355-PA 314 CG3355-PA 75..305 30..252 355 35.4 Plus
CG32523-PA 262 CG32523-PA 10..260 5..253 351 36.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18413-PA 256 GI18413-PA 1..253 1..253 958 81 Plus
Dmoj\GI21244-PA 256 GI21244-PA 1..253 1..253 954 80.6 Plus
Dmoj\GI18414-PA 256 GI18414-PA 1..253 1..253 950 80.2 Plus
Dmoj\GI21243-PA 255 GI21243-PA 1..252 1..253 861 61.7 Plus
Dmoj\GI20607-PA 261 GI20607-PA 9..258 5..253 650 51.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17339-PA 256 GL17339-PA 1..253 1..253 1099 84.6 Plus
Dper\GL17143-PA 256 GL17143-PA 1..253 1..253 1095 87.4 Plus
Dper\GL17142-PA 256 GL17142-PA 1..253 1..253 1067 86.2 Plus
Dper\GL17338-PA 256 GL17338-PA 1..253 1..253 895 64 Plus
Dper\GL11685-PA 259 GL11685-PA 2..254 1..251 677 61.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14937-PA 256 GA14937-PA 1..253 1..253 1099 84.6 Plus
Dpse\GA24980-PA 256 GA24980-PA 1..253 1..253 1088 87 Plus
Dpse\GA24979-PA 256 GA24979-PA 1..253 1..253 1072 86.6 Plus
Dpse\GA15051-PA 256 GA15051-PA 1..253 1..253 907 64.4 Plus
Dpse\GA18449-PA 259 GA18449-PA 2..254 1..251 680 62.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20441-PA 256 GM20441-PA 1..253 1..253 1040 86.2 Plus
Dsec\GM21283-PA 266 GM21283-PA 1..263 1..253 720 54.3 Plus
Dsec\GM21468-PA 260 GM21468-PA 17..254 16..250 711 59.8 Plus
Dsec\GM20439-PA 378 GM20439-PA 1..133 1..133 676 94.7 Plus
Dsec\GM18246-PA 248 GM18246-PA 2..238 1..250 522 44 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15391-PA 253 GD15391-PA 1..253 1..253 1139 93.3 Plus
Dsim\GD25907-PA 485 GD25907-PA 232..482 3..253 985 85.3 Plus
Dsim\GD10793-PA 253 GD10793-PA 1..253 1..253 979 86.2 Plus
Dsim\GD25907-PA 485 GD25907-PA 1..230 1..230 816 64.8 Plus
Dsim\GD15412-PA 260 GD15412-PA 17..254 16..250 712 59.8 Plus
Dsim\GD21711-PA 258 GD21711-PA 4..255 1..253 650 51.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Try1-PA 256 GJ21500-PA 1..253 1..253 1019 83 Plus
Dvir\GJ21499-PA 256 GJ21499-PA 1..253 1..253 1019 83 Plus
Dvir\GJ21498-PA 256 GJ21498-PA 1..253 1..253 990 76.7 Plus
Dvir\GJ20849-PA 256 GJ20849-PA 1..253 1..253 975 83 Plus
Dvir\GJ21497-PA 309 GJ21497-PA 1..306 1..253 964 68.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21995-PA 256 GK21995-PA 1..253 1..253 1084 82.2 Plus
Dwil\GK19675-PA 256 GK19675-PA 1..253 1..253 1066 87 Plus
Dwil\GK19692-PA 256 GK19692-PA 1..253 1..253 1050 87.4 Plus
Dwil\GK19454-PA 256 GK19454-PA 1..253 1..253 1043 86.6 Plus
Dwil\GK19693-PA 256 GK19693-PA 1..253 1..253 1025 85 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13533-PA 256 GE13533-PA 1..253 1..253 1126 91.7 Plus
Dyak\GE12354-PA 256 GE12354-PA 1..253 1..253 1126 91.7 Plus
Dyak\GE12353-PA 253 GE12353-PA 1..253 1..253 1047 88.9 Plus
Dyak\alphaTry-PA 256 GE13535-PA 1..253 1..253 1013 87 Plus
Dyak\epsilonTry-PA 256 GE13534-PA 1..253 1..253 884 63.6 Plus