BDGP Sequence Production Resources |
Search the DGRC for RE40347
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 403 |
Well: | 47 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Sry-alpha-RA |
Protein status: | RE40347.pep: gold |
Preliminary Size: | 1593 |
Sequenced Size: | 1874 |
Gene | Date | Evidence |
---|---|---|
CG17957 | 2001-12-14 | Blastp of sequenced clone |
CG17957 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17957 | 2003-01-01 | Sim4 clustering to Release 3 |
Sry-alpha | 2008-04-29 | Release 5.5 accounting |
Sry-alpha | 2008-08-15 | Release 5.9 accounting |
Sry-alpha | 2008-12-18 | 5.12 accounting |
1874 bp (1874 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071374
> RE40347.complete ACTTTGTTGAACATTTCTGTTTCCCGGAGCACATCTGATAGAACAGCATG GAACAGCTATTGGCCCAATTACACACTTGCAGTGAGCTGATTGCAGAGGG CTACAGCAGCACCGGCAACATTGGCTGGCTGAACGAGTTCTGCGCCACTT TCCTGGACTTCGCCAGCGATCTGAAGGCTAGGCTGCCGGAGGTGGCGCCC AGTGGCGCAAACCTTGATGTGGAGACCATCTTCCTGTGCCTCACCCAGGT GGTAACCTGCATCACCCACCTAGAGCGGACCATCAGCATGGAGGCACCGC ATATGACCAGGCAGCACTTCCTCGACCGCTTGGACTGGTGCTTGCGGCGA CTGCTCGTCTCCTTGACGCAACTGGAAGGCAACGTGACCCCAGTCAAGAA CCTAGAGGATCACTCCTTCGTTGAGCTCATGGACCTGGCTCTGGACCACT TGGATGACTACATGGAGAAGCTGGCCCAGCAGAGAAACAACTCGCTGCAC ATTCTAGAAGAGAGCTTCACGGAAGACACCTACCAGCTGGCCAGCATAGT TAATCACATCGTTCGCCACGCCCTGGCCTTTGCCAATGTGGCCATTCATT CGGACAAGAAGGCTTTGACGGCTTTGTGCGAGACCTTGCTCGCCGAATGT GCCACTTTCCACGAGGAGGCGGGCGAGCCCAACAGTGGTCATCGGAAGCT GGAGGCCCTCTCCCTGGAACGTGCCCTCTATGCCCTGGAATCCTTTCTCA ATGAGGCGCTGCTGCACTTGCTGTTCGTCAGTCTGATAGATCTGGAAAAC GCTTCGGTGGAGAAGCTAAAGGATGCACTGCAAAGGGATCCTGCGGGAGC TCAGGAGCTAATCTCCGCATTCGACACGAACATGGATCGCATTCAGCAGA TTGGGGTTCTGGCCATAGCCTTCTCGCAGGACATCAAAACGAAGACGATT GTCAGGAGCTGCCTGGCCTCACTGGAATCCCTGGATGCGTGCATTGTGCC CGCTCTCCAGCTGCCAGAGTCCACTTCATCCGCACACCACGCGGAGGTCT TGCAGGAGCATTTTAACCAGGAGCTGCTGATCTTTAGGAACGTCATCCAC GAAATCATCGATAGCTGCTCCCTGATCAACAACTACCTGGACATGCTGGG CGAGAGGATCCACGTACAGGACAAAAGCCATCTGAAGCTGATTGTCCAGA GGGGCGGAGTGGTGGTGGATCACTTTCGGCTGCCCGTCAATTACTCGGGA CTCAGTGAAGATGGCAAGCGGGTGCACAAGGACCTCATTCTGATCCTGCG CGAGTGCCAGGCCGTGGTCAACCTGGACGTCCCAGTGGATCCCAAGCGCA TCGTGAAGCGCCTTAAGATACTGTACTCCGTGCTGGCCAAGCTGAGGGAC TTGATATGCAGGGATAATCTGGAGCCCGATTCCTCAGTTGCTTCCGAAGC TCAAGTGCCCTCAAGTGCAACCCGAACTTTTGTGCGGAGCAGTCGATCCT TTGGCAAACGGCATCGATCCTTTGTAAAACAAACCGGAAATTGCTCAGTT TTCGGGCCACAGGACTCACTTGCTGAATCCGGACACAGCGAAAGCGATCT TATTAGTTTCCAAATCACTGAGATTCTTAGGTTAGATTGAGTGGGGCGAG CCATATTCTAAATACGCGGGCTTATCTGTATGAGATTTTTTTTAATACTT CATTGGCTTGAAGTGCTTAATTAAGATTAAACATATCCTTACAAAGATTC TAATTAGCTACCTAAGTCAATTGTGTTCTTTACACTTATGTAATTACTTC ATTAAGTTGAAGCCATTCGCATAATTTATATAAAATACAATTAAAACATA CCATTACAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sry-alpha-RA | 1872 | Sry-alpha-RA | 1..1864 | 1..1864 | 9290 | 99.8 | Plus |
Sry-beta.c | 5242 | Sry-beta.c | 1501..3364 | 1..1864 | 9290 | 99.8 | Plus |
Sry-beta.b | 3347 | Sry-beta.b | 1501..3347 | 1..1847 | 9220 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25863630..25865485 | 1..1856 | 9265 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 30041215..30043078 | 1..1864 | 9290 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29782046..29783909 | 1..1864 | 9290 | 99.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25863630..25865449 | 1..1820 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RA | 1..1593 | 48..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RA | 1..1593 | 48..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RA | 1..1593 | 48..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RA | 1..1593 | 48..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RA | 1..1593 | 48..1640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RA | 1..1856 | 1..1857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RA | 1..1856 | 1..1857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RA | 1..1854 | 4..1857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RA | 1..1856 | 1..1857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sry-alpha-RB | 1497..3352 | 1..1857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30041215..30043070 | 1..1857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30041215..30043070 | 1..1857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30041215..30043070 | 1..1857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25866937..25868792 | 1..1857 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29782046..29783901 | 1..1857 | 99 | Plus |
Translation from 47 to 1639
> RE40347.pep MEQLLAQLHTCSELIAEGYSSTGNIGWLNEFCATFLDFASDLKARLPEVA PSGANLDVETIFLCLTQVVTCITHLERTISMEAPHMTRQHFLDRLDWCLR RLLVSLTQLEGNVTPVKNLEDHSFVELMDLALDHLDDYMEKLAQQRNNSL HILEESFTEDTYQLASIVNHIVRHALAFANVAIHSDKKALTALCETLLAE CATFHEEAGEPNSGHRKLEALSLERALYALESFLNEALLHLLFVSLIDLE NASVEKLKDALQRDPAGAQELISAFDTNMDRIQQIGVLAIAFSQDIKTKT IVRSCLASLESLDACIVPALQLPESTSSAHHAEVLQEHFNQELLIFRNVI HEIIDSCSLINNYLDMLGERIHVQDKSHLKLIVQRGGVVVDHFRLPVNYS GLSEDGKRVHKDLILILRECQAVVNLDVPVDPKRIVKRLKILYSVLAKLR DLICRDNLEPDSSVASEAQVPSSATRTFVRSSRSFGKRHRSFVKQTGNCS VFGPQDSLAESGHSESDLISFQITEILRLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19985-PA | 527 | GF19985-PA | 1..527 | 1..530 | 1939 | 70.5 | Plus |
Dana\GF12990-PA | 597 | GF12990-PA | 1..466 | 1..453 | 703 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11723-PA | 530 | GG11723-PA | 1..530 | 1..530 | 2610 | 93.4 | Plus |
Dere\GG10607-PA | 594 | GG10607-PA | 1..457 | 1..449 | 720 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19171-PA | 538 | GH19171-PA | 1..538 | 1..530 | 1245 | 49.6 | Plus |
Dgri\GH22684-PA | 564 | GH22684-PA | 1..462 | 1..451 | 685 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sry-alpha-PB | 530 | CG17957-PB | 1..530 | 1..530 | 2684 | 100 | Plus |
Sry-alpha-PA | 530 | CG17957-PA | 1..530 | 1..530 | 2684 | 100 | Plus |
Spt-PB | 591 | CG8247-PB | 1..457 | 1..449 | 715 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24207-PA | 521 | GI24207-PA | 1..520 | 1..529 | 1265 | 52.4 | Plus |
Dmoj\GI20612-PA | 586 | GI20612-PA | 1..460 | 1..460 | 720 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14022-PA | 551 | GL14022-PA | 1..551 | 1..530 | 1699 | 62.8 | Plus |
Dper\GL10405-PA | 596 | GL10405-PA | 1..466 | 1..453 | 702 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Sry-alpha-PA | 551 | GA14740-PA | 1..551 | 1..530 | 1699 | 63.1 | Plus |
Dpse\GA20927-PA | 596 | GA20927-PA | 1..466 | 1..453 | 712 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\Sry-alpha-PA | 529 | GM12854-PA | 1..529 | 1..530 | 2697 | 97 | Plus |
Dsec\GM20652-PA | 591 | GM20652-PA | 1..457 | 1..449 | 726 | 36.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Sry-alpha-PA | 530 | GD21496-PA | 1..530 | 1..530 | 2714 | 97 | Plus |
Dsim\GD10125-PA | 591 | GD10125-PA | 1..457 | 1..449 | 732 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Sry-alpha-PA | 537 | GJ10776-PA | 1..536 | 1..529 | 1293 | 50.9 | Plus |
Dvir\GJ21052-PA | 596 | GJ21052-PA | 1..468 | 1..460 | 742 | 37.5 | Plus |
Translation from 47 to 1639
> RE40347.hyp MEQLLAQLHTCSELIAEGYSSTGNIGWLNEFCATFLDFASDLKARLPEVA PSGANLDVETIFLCLTQVVTCITHLERTISMEAPHMTRQHFLDRLDWCLR RLLVSLTQLEGNVTPVKNLEDHSFVELMDLALDHLDDYMEKLAQQRNNSL HILEESFTEDTYQLASIVNHIVRHALAFANVAIHSDKKALTALCETLLAE CATFHEEAGEPNSGHRKLEALSLERALYALESFLNEALLHLLFVSLIDLE NASVEKLKDALQRDPAGAQELISAFDTNMDRIQQIGVLAIAFSQDIKTKT IVRSCLASLESLDACIVPALQLPESTSSAHHAEVLQEHFNQELLIFRNVI HEIIDSCSLINNYLDMLGERIHVQDKSHLKLIVQRGGVVVDHFRLPVNYS GLSEDGKRVHKDLILILRECQAVVNLDVPVDPKRIVKRLKILYSVLAKLR DLICRDNLEPDSSVASEAQVPSSATRTFVRSSRSFGKRHRSFVKQTGNCS VFGPQDSLAESGHSESDLISFQITEILRLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sry-alpha-PB | 530 | CG17957-PB | 1..530 | 1..530 | 2684 | 100 | Plus |
Sry-alpha-PA | 530 | CG17957-PA | 1..530 | 1..530 | 2684 | 100 | Plus |
Spt-PB | 591 | CG8247-PB | 1..457 | 1..449 | 715 | 36.6 | Plus |