Clone RE40372 Report

Search the DGRC for RE40372

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:403
Well:72
Vector:pFlc-1
Associated Gene/TranscriptCG31446-RA
Protein status:RE40372.pep: gold
Sequenced Size:883

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31446 2001-12-17 Blastp of sequenced clone
CG5399 2002-01-01 Sim4 clustering to Release 2
CG31446 2003-01-01 Sim4 clustering to Release 3
CG31446 2008-04-29 Release 5.5 accounting
CG31446 2008-08-15 Release 5.9 accounting
CG31446 2008-12-18 5.12 accounting

Clone Sequence Records

RE40372.complete Sequence

883 bp (883 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071375

> RE40372.complete
AGTTCTTGATCTGAAGCCGGGTCACAAGCAACACCTTCACAATGGTATCA
AATAGCACTTATGCTTTGGGTCTCCTTTGCATTTTGGTTTTTCTACAAGG
AAGTACACCGATCCTAGCCCAGAGTAATGATTATGTGGCCCTATGTAACT
TGACCGATAGCATTGCGGTCGATCTTGATCTGTTCTCTGGAATTTGGTGG
GAAGTGGCTCGTCAGCCGTCCGGCATTGATTTTTGCACTGAGGTGAATAT
TACGGTGCTGAATAAAACCGAGGATAATGTGCTGATCGATACCACATATG
CCGTATCTCCCGATTACCCGTGGGTGAATCAAACCATGAACGCAACCATC
ACTGTGGAGAATAACACGGCGGCCGCGGATGGCTACAACTTCACCTACTG
GAACCCACCTGGTTATACCACCTATACAGTGTACAAGGTCCTTTACACTG
ACTACACCGATGTGGCCTTCCTTTGTGGCTATACCAACAAGACGGATAAC
GGCACATCCTTTGGAATTATCCTTGCTAGGGATCGTACCCCCACCACACA
AATTTTGAATAAACTCGAGGGTCTTGGCTCTAGTATATCTTCAAACTTTT
TAAATGGCACCATGTCAGCGATAACTCAGGGCGAATCTTGCTATGCACCA
TCCGGATCCAATCCTTCGACCATTATTTCCACAATGTTGATTGCCATGGC
TATTATTCTTGGCATTTTTGCTGACCATCAAATAAATTAGATTATATCTT
GCAAGGTAGATAACAACAACGCACCGAAAATATGTTTTGTTATCTTAAAT
GTTCTTTAATTTTTGCCTTGTATATAAGGTCCATGTAAAAGCTCTAATAA
ATAAAATTCATTCATTAAAAAAAAAAAAAAAAA

RE40372.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446.b 1159 CG31446.b 95..961 1..867 4335 100 Plus
CG31446-RA 969 CG31446-RA 95..961 1..867 4335 100 Plus
CG31446.a 885 CG31446.a 1..639 1..639 3195 100 Plus
CG31446.a 885 CG31446.a 653..882 638..867 1150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11517949..11518404 182..637 2280 100 Plus
chr3R 27901430 chr3R 11518587..11518815 638..866 1145 100 Plus
chr3R 27901430 chr3R 11517710..11517891 1..182 910 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15693328..15693783 182..637 2280 100 Plus
3R 32079331 3R 15693966..15694195 638..867 1150 100 Plus
3R 32079331 3R 15693089..15693270 1..182 910 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15434159..15434614 182..637 2280 100 Plus
3R 31820162 3R 15434797..15435026 638..867 1150 100 Plus
3R 31820162 3R 15433920..15434101 1..182 910 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:37:13 has no hits.

RE40372.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:38:15 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11517710..11517891 1..182 100 -> Plus
chr3R 11517950..11518404 183..637 100 -> Plus
chr3R 11518587..11518815 638..866 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:06 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..699 42..740 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:15 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..699 42..740 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:19:44 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..699 42..740 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:00 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..699 42..740 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:15:25 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..699 42..740 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:47 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..866 1..866 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:15 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..866 1..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:19:44 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 4..869 1..866 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:00 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..866 1..866 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:25 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 4..869 1..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:15 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15693089..15693270 1..182 100 -> Plus
3R 15693329..15693783 183..637 100 -> Plus
3R 15693966..15694194 638..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:15 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15693089..15693270 1..182 100 -> Plus
3R 15693329..15693783 183..637 100 -> Plus
3R 15693966..15694194 638..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:38:15 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15693089..15693270 1..182 100 -> Plus
3R 15693329..15693783 183..637 100 -> Plus
3R 15693966..15694194 638..866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:19:44 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11518811..11518992 1..182 100 -> Plus
arm_3R 11519051..11519505 183..637 100 -> Plus
arm_3R 11519688..11519916 638..866 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:08 Download gff for RE40372.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15434160..15434614 183..637 100 -> Plus
3R 15434797..15435025 638..866 100   Plus
3R 15433920..15434101 1..182 100 -> Plus

RE40372.hyp Sequence

Translation from 41 to 739

> RE40372.hyp
MVSNSTYALGLLCILVFLQGSTPILAQSNDYVALCNLTDSIAVDLDLFSG
IWWEVARQPSGIDFCTEVNITVLNKTEDNVLIDTTYAVSPDYPWVNQTMN
ATITVENNTAAADGYNFTYWNPPGYTTYTVYKVLYTDYTDVAFLCGYTNK
TDNGTSFGIILARDRTPTTQILNKLEGLGSSISSNFLNGTMSAITQGESC
YAPSGSNPSTIISTMLIAMAIILGIFADHQIN*

RE40372.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-PA 232 CG31446-PA 1..232 1..232 1216 100 Plus
CG31446-PB 237 CG31446-PB 1..237 1..232 1200 97.9 Plus
CG5399-PB 218 CG5399-PB 5..215 8..223 161 30.9 Plus
CG5399-PA 218 CG5399-PA 5..215 8..223 161 30.9 Plus

RE40372.pep Sequence

Translation from 41 to 739

> RE40372.pep
MVSNSTYALGLLCILVFLQGSTPILAQSNDYVALCNLTDSIAVDLDLFSG
IWWEVARQPSGIDFCTEVNITVLNKTEDNVLIDTTYAVSPDYPWVNQTMN
ATITVENNTAAADGYNFTYWNPPGYTTYTVYKVLYTDYTDVAFLCGYTNK
TDNGTSFGIILARDRTPTTQILNKLEGLGSSISSNFLNGTMSAITQGESC
YAPSGSNPSTIISTMLIAMAIILGIFADHQIN*

RE40372.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18531-PA 230 GF18531-PA 18..227 12..225 734 68.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16938-PA 232 GG16938-PA 1..231 1..231 1046 86.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18209-PA 247 GH18209-PA 56..245 35..226 585 55.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-PA 232 CG31446-PA 1..232 1..232 1216 100 Plus
CG31446-PB 237 CG31446-PB 1..237 1..232 1200 97.9 Plus
CG5399-PB 218 CG5399-PB 5..215 8..223 161 30.9 Plus
CG5399-PA 218 CG5399-PA 5..215 8..223 161 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10162-PA 231 GI10162-PA 39..226 35..223 547 57.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12696-PA 169 GL12696-PA 27..160 28..161 530 73.9 Plus
Dper\GL12697-PA 224 GL12697-PA 48..222 48..223 150 32 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16255-PA 230 GA16255-PA 27..230 28..229 716 67.6 Plus
Dpse\GA18852-PA 224 GA18852-PA 48..222 48..223 161 32.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24247-PA 232 GM24247-PA 1..231 1..231 1153 95.7 Plus
Dsec\GM24248-PA 212 GM24248-PA 28..209 35..223 144 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19036-PA 171 GD19036-PA 1..124 1..124 626 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10864-PA 231 GJ10864-PA 33..226 20..223 610 58.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11407-PA 212 GK11407-PA 42..211 43..210 501 59.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24326-PA 232 GE24326-PA 1..231 1..231 985 85.3 Plus