BDGP Sequence Production Resources |
Search the DGRC for RE40372
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 403 |
Well: | 72 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31446-RA |
Protein status: | RE40372.pep: gold |
Sequenced Size: | 883 |
Gene | Date | Evidence |
---|---|---|
CG31446 | 2001-12-17 | Blastp of sequenced clone |
CG5399 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31446 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31446 | 2008-04-29 | Release 5.5 accounting |
CG31446 | 2008-08-15 | Release 5.9 accounting |
CG31446 | 2008-12-18 | 5.12 accounting |
883 bp (883 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071375
> RE40372.complete AGTTCTTGATCTGAAGCCGGGTCACAAGCAACACCTTCACAATGGTATCA AATAGCACTTATGCTTTGGGTCTCCTTTGCATTTTGGTTTTTCTACAAGG AAGTACACCGATCCTAGCCCAGAGTAATGATTATGTGGCCCTATGTAACT TGACCGATAGCATTGCGGTCGATCTTGATCTGTTCTCTGGAATTTGGTGG GAAGTGGCTCGTCAGCCGTCCGGCATTGATTTTTGCACTGAGGTGAATAT TACGGTGCTGAATAAAACCGAGGATAATGTGCTGATCGATACCACATATG CCGTATCTCCCGATTACCCGTGGGTGAATCAAACCATGAACGCAACCATC ACTGTGGAGAATAACACGGCGGCCGCGGATGGCTACAACTTCACCTACTG GAACCCACCTGGTTATACCACCTATACAGTGTACAAGGTCCTTTACACTG ACTACACCGATGTGGCCTTCCTTTGTGGCTATACCAACAAGACGGATAAC GGCACATCCTTTGGAATTATCCTTGCTAGGGATCGTACCCCCACCACACA AATTTTGAATAAACTCGAGGGTCTTGGCTCTAGTATATCTTCAAACTTTT TAAATGGCACCATGTCAGCGATAACTCAGGGCGAATCTTGCTATGCACCA TCCGGATCCAATCCTTCGACCATTATTTCCACAATGTTGATTGCCATGGC TATTATTCTTGGCATTTTTGCTGACCATCAAATAAATTAGATTATATCTT GCAAGGTAGATAACAACAACGCACCGAAAATATGTTTTGTTATCTTAAAT GTTCTTTAATTTTTGCCTTGTATATAAGGTCCATGTAAAAGCTCTAATAA ATAAAATTCATTCATTAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31446.b | 1159 | CG31446.b | 95..961 | 1..867 | 4335 | 100 | Plus |
CG31446-RA | 969 | CG31446-RA | 95..961 | 1..867 | 4335 | 100 | Plus |
CG31446.a | 885 | CG31446.a | 1..639 | 1..639 | 3195 | 100 | Plus |
CG31446.a | 885 | CG31446.a | 653..882 | 638..867 | 1150 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11517949..11518404 | 182..637 | 2280 | 100 | Plus |
chr3R | 27901430 | chr3R | 11518587..11518815 | 638..866 | 1145 | 100 | Plus |
chr3R | 27901430 | chr3R | 11517710..11517891 | 1..182 | 910 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15693328..15693783 | 182..637 | 2280 | 100 | Plus |
3R | 32079331 | 3R | 15693966..15694195 | 638..867 | 1150 | 100 | Plus |
3R | 32079331 | 3R | 15693089..15693270 | 1..182 | 910 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 15434159..15434614 | 182..637 | 2280 | 100 | Plus |
3R | 31820162 | 3R | 15434797..15435026 | 638..867 | 1150 | 100 | Plus |
3R | 31820162 | 3R | 15433920..15434101 | 1..182 | 910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11517710..11517891 | 1..182 | 100 | -> | Plus |
chr3R | 11517950..11518404 | 183..637 | 100 | -> | Plus |
chr3R | 11518587..11518815 | 638..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 1..699 | 42..740 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 1..699 | 42..740 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 1..699 | 42..740 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 1..699 | 42..740 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 1..699 | 42..740 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 1..866 | 1..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 1..866 | 1..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 4..869 | 1..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 1..866 | 1..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31446-RA | 4..869 | 1..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15693089..15693270 | 1..182 | 100 | -> | Plus |
3R | 15693329..15693783 | 183..637 | 100 | -> | Plus |
3R | 15693966..15694194 | 638..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15693089..15693270 | 1..182 | 100 | -> | Plus |
3R | 15693329..15693783 | 183..637 | 100 | -> | Plus |
3R | 15693966..15694194 | 638..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15693089..15693270 | 1..182 | 100 | -> | Plus |
3R | 15693329..15693783 | 183..637 | 100 | -> | Plus |
3R | 15693966..15694194 | 638..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11518811..11518992 | 1..182 | 100 | -> | Plus |
arm_3R | 11519051..11519505 | 183..637 | 100 | -> | Plus |
arm_3R | 11519688..11519916 | 638..866 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15434160..15434614 | 183..637 | 100 | -> | Plus |
3R | 15434797..15435025 | 638..866 | 100 | Plus | |
3R | 15433920..15434101 | 1..182 | 100 | -> | Plus |
Translation from 41 to 739
> RE40372.hyp MVSNSTYALGLLCILVFLQGSTPILAQSNDYVALCNLTDSIAVDLDLFSG IWWEVARQPSGIDFCTEVNITVLNKTEDNVLIDTTYAVSPDYPWVNQTMN ATITVENNTAAADGYNFTYWNPPGYTTYTVYKVLYTDYTDVAFLCGYTNK TDNGTSFGIILARDRTPTTQILNKLEGLGSSISSNFLNGTMSAITQGESC YAPSGSNPSTIISTMLIAMAIILGIFADHQIN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31446-PA | 232 | CG31446-PA | 1..232 | 1..232 | 1216 | 100 | Plus |
CG31446-PB | 237 | CG31446-PB | 1..237 | 1..232 | 1200 | 97.9 | Plus |
CG5399-PB | 218 | CG5399-PB | 5..215 | 8..223 | 161 | 30.9 | Plus |
CG5399-PA | 218 | CG5399-PA | 5..215 | 8..223 | 161 | 30.9 | Plus |
Translation from 41 to 739
> RE40372.pep MVSNSTYALGLLCILVFLQGSTPILAQSNDYVALCNLTDSIAVDLDLFSG IWWEVARQPSGIDFCTEVNITVLNKTEDNVLIDTTYAVSPDYPWVNQTMN ATITVENNTAAADGYNFTYWNPPGYTTYTVYKVLYTDYTDVAFLCGYTNK TDNGTSFGIILARDRTPTTQILNKLEGLGSSISSNFLNGTMSAITQGESC YAPSGSNPSTIISTMLIAMAIILGIFADHQIN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18531-PA | 230 | GF18531-PA | 18..227 | 12..225 | 734 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16938-PA | 232 | GG16938-PA | 1..231 | 1..231 | 1046 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18209-PA | 247 | GH18209-PA | 56..245 | 35..226 | 585 | 55.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31446-PA | 232 | CG31446-PA | 1..232 | 1..232 | 1216 | 100 | Plus |
CG31446-PB | 237 | CG31446-PB | 1..237 | 1..232 | 1200 | 97.9 | Plus |
CG5399-PB | 218 | CG5399-PB | 5..215 | 8..223 | 161 | 30.9 | Plus |
CG5399-PA | 218 | CG5399-PA | 5..215 | 8..223 | 161 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10162-PA | 231 | GI10162-PA | 39..226 | 35..223 | 547 | 57.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12696-PA | 169 | GL12696-PA | 27..160 | 28..161 | 530 | 73.9 | Plus |
Dper\GL12697-PA | 224 | GL12697-PA | 48..222 | 48..223 | 150 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16255-PA | 230 | GA16255-PA | 27..230 | 28..229 | 716 | 67.6 | Plus |
Dpse\GA18852-PA | 224 | GA18852-PA | 48..222 | 48..223 | 161 | 32.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24247-PA | 232 | GM24247-PA | 1..231 | 1..231 | 1153 | 95.7 | Plus |
Dsec\GM24248-PA | 212 | GM24248-PA | 28..209 | 35..223 | 144 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19036-PA | 171 | GD19036-PA | 1..124 | 1..124 | 626 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10864-PA | 231 | GJ10864-PA | 33..226 | 20..223 | 610 | 58.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11407-PA | 212 | GK11407-PA | 42..211 | 43..210 | 501 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24326-PA | 232 | GE24326-PA | 1..231 | 1..231 | 985 | 85.3 | Plus |