BDGP Sequence Production Resources |
Search the DGRC for RE40480
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 404 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Dip3-RA |
Protein status: | RE40480.pep: gold |
Preliminary Size: | 1452 |
Sequenced Size: | 1447 |
Gene | Date | Evidence |
---|---|---|
CG12767 | 2001-12-14 | Blastp of sequenced clone |
CG12767 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12767 | 2003-01-01 | Sim4 clustering to Release 3 |
Dip3 | 2008-04-29 | Release 5.5 accounting |
Dip3 | 2008-08-15 | Release 5.9 accounting |
Dip3 | 2008-12-18 | 5.12 accounting |
1447 bp (1447 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071378
> RE40480.complete GTAAATCGGTCGCAGCAACATAAACTTTTAGAATCGCCAGCGAGAGCCGT CTTAAAAGTGCGAATACAAACAGAAGGAAAAGCGGCCGCCTATGGCAACC TGACTAGCAAAACATTCGAAAGCAATTGGCCAAAGTTAGGACGAAATGAG CCGAAAGAACGGAAACCAGGACACCTTTCCCAAGACGGAGAAGATGCAGC GCTACTACGCGGAGCGCGAGACCACAGGACCCGAGTTCGACGATCGCCTG ATAAAGCTTGTGCGCGCCAATCCGGCCATCTATGATGTCAGCCATCCGCA CTATCGCCGTAATCCGGTGCGGGTGGACATATGGGATCGCATTGCCAACG AACTGGGCGCCTCCTCCCGATTTCTGCAAACCAAATGGAAGAACATACGA TACAACTATCTGCAGGAGGTCAAGGCGATTGAGACGGGCCAGGCGAATCC GAACGTACGCAAGCGGCGCTTCACTGAGGATCTATCCTTTCTGCAGAACA CGGCCCAAACCTACAATGTGAAGAAATCCCAGAGCTACGTGGCCCAACAG AATGGAATGGGAAGTGACAACGACAGCAATAGCTTTTTGTATCCCGATCC GGAGCACCTAAAGATCGACGCCTCCGAGGGCTACGACATCATCGAGCTGG ACAACAGCGACGATGGCTCAAATAGCGACGACAACGAGATTGTGCCCGAG TTGCAGCTGGTCATGGGAGAGTCCAAGCAGCAATTATCCCTGCCGACGAC ACTGAACGGCACCAGCAGCAGCAATCACAGCCACGAACATGACCAAGCCA GCTCGCCGGCCTCCTCGCCCCTGCTAACGCCGATGGTTGTAATGGGCAAT GGCTATGGCCAGGAGGTGCATCTAGAACAGCAGCAGACACAGGAGCAAAA GCCGTTCAAGAATAGCTCGCTGTCCAACGGAGAAGTGACCATTGAGCCCA TTTACAAGCCTGCGGCTATCAGACGCGCATTACCCAGCGATTTTCTGACC AATCCCTTCAAGCGCAAGGCAACCCAAGCGCCGCTTCAGACCCAAGTGAC GTCGTCCTTCAACGATCCCATCGAGCTCTACTGCCTATCGCTGGTGGACA CACTGCGCAGCATGCGGAGATCGGAACGGGAGCGGGTCAAGTTCGAGTTC GCCAACATTCTGAAGGACGCCAAGTACAAGGACGAAAGCTAAGGCGTCAT AGTCATCATTCTATACGTACAATTCTCGATTAGTATCCTTAGTGGTAGAC AACGCACTCGAACACTTCCCACACTCCCCCTTCATTTATGTATTTACATA CTTGCAAACAACTTGTAACTCTACGTTTCGAGTCCTAGGCTAAGGTTCTA GGTTAATTTGAGGCGATATGTGTCCATAGTCCATATCTCTTTAGTTGTAT CAACATTGAGTCGAATAAAATTATGCACAAAACAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dip3-RA | 1680 | Dip3-RA | 239..1673 | 1..1435 | 7175 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 14016295..14017362 | 366..1433 | 5190 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 14015648..14015886 | 1..239 | 1195 | 100 | Plus |
chr2R | 21145070 | chr2R | 14016091..14016217 | 239..365 | 635 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 18129179..18130248 | 366..1435 | 5350 | 100 | Plus |
2R | 25286936 | 2R | 18128532..18128770 | 1..239 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 18128975..18129101 | 239..365 | 635 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 18130378..18131447 | 366..1435 | 5350 | 100 | Plus |
2R | 25260384 | 2R | 18129731..18129969 | 1..239 | 1195 | 100 | Plus |
2R | 25260384 | 2R | 18130174..18130300 | 239..365 | 635 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 14015648..14015886 | 1..239 | 100 | -> | Plus |
chr2R | 14016092..14016217 | 240..365 | 100 | -> | Plus |
chr2R | 14016295..14017362 | 366..1433 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 1..1047 | 146..1192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 1..1047 | 146..1192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 1..1047 | 146..1192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 1..1047 | 146..1192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 1..1047 | 146..1192 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 33..1465 | 1..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 33..1465 | 1..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 39..1471 | 1..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 33..1465 | 1..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dip3-RA | 39..1471 | 1..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18128532..18128770 | 1..239 | 100 | -> | Plus |
2R | 18128976..18129101 | 240..365 | 100 | -> | Plus |
2R | 18129179..18130246 | 366..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18128532..18128770 | 1..239 | 100 | -> | Plus |
2R | 18128976..18129101 | 240..365 | 100 | -> | Plus |
2R | 18129179..18130246 | 366..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18128532..18128770 | 1..239 | 100 | -> | Plus |
2R | 18128976..18129101 | 240..365 | 100 | -> | Plus |
2R | 18129179..18130246 | 366..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 14016037..14016275 | 1..239 | 100 | -> | Plus |
arm_2R | 14016481..14016606 | 240..365 | 100 | -> | Plus |
arm_2R | 14016684..14017751 | 366..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18129731..18129969 | 1..239 | 100 | -> | Plus |
2R | 18130175..18130300 | 240..365 | 100 | -> | Plus |
2R | 18130378..18131445 | 366..1433 | 100 | Plus |
Translation from 145 to 1191
> RE40480.hyp MSRKNGNQDTFPKTEKMQRYYAERETTGPEFDDRLIKLVRANPAIYDVSH PHYRRNPVRVDIWDRIANELGASSRFLQTKWKNIRYNYLQEVKAIETGQA NPNVRKRRFTEDLSFLQNTAQTYNVKKSQSYVAQQNGMGSDNDSNSFLYP DPEHLKIDASEGYDIIELDNSDDGSNSDDNEIVPELQLVMGESKQQLSLP TTLNGTSSSNHSHEHDQASSPASSPLLTPMVVMGNGYGQEVHLEQQQTQE QKPFKNSSLSNGEVTIEPIYKPAAIRRALPSDFLTNPFKRKATQAPLQTQ VTSSFNDPIELYCLSLVDTLRSMRRSERERVKFEFANILKDAKYKDES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dip3-PA | 348 | CG12767-PA | 1..348 | 1..348 | 1807 | 100 | Plus |
Translation from 145 to 1191
> RE40480.pep MSRKNGNQDTFPKTEKMQRYYAERETTGPEFDDRLIKLVRANPAIYDVSH PHYRRNPVRVDIWDRIANELGASSRFLQTKWKNIRYNYLQEVKAIETGQA NPNVRKRRFTEDLSFLQNTAQTYNVKKSQSYVAQQNGMGSDNDSNSFLYP DPEHLKIDASEGYDIIELDNSDDGSNSDDNEIVPELQLVMGESKQQLSLP TTLNGTSSSNHSHEHDQASSPASSPLLTPMVVMGNGYGQEVHLEQQQTQE QKPFKNSSLSNGEVTIEPIYKPAAIRRALPSDFLTNPFKRKATQAPLQTQ VTSSFNDPIELYCLSLVDTLRSMRRSERERVKFEFANILKDAKYKDES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12650-PA | 342 | GF12650-PA | 8..342 | 16..348 | 1347 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21844-PA | 348 | GG21844-PA | 1..348 | 1..348 | 1674 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21050-PA | 368 | GH21050-PA | 5..368 | 16..348 | 1160 | 67 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dlip3-PA | 348 | CG12767-PA | 1..348 | 1..348 | 1807 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18651-PA | 362 | GI18651-PA | 1..362 | 17..348 | 1130 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11546-PA | 326 | GL11546-PA | 1..326 | 17..348 | 1276 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11800-PA | 326 | GA11800-PA | 1..326 | 17..348 | 1279 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21845-PA | 267 | GM21845-PA | 34..267 | 115..348 | 1054 | 92.3 | Plus |
Dsec\GM21845-PA | 267 | GM21845-PA | 1..31 | 1..31 | 166 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11339-PA | 348 | GD11339-PA | 1..348 | 1..348 | 1704 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21668-PA | 346 | GJ21668-PA | 1..346 | 17..348 | 1194 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19649-PA | 391 | GK19649-PA | 1..391 | 17..348 | 1103 | 61 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11923-PA | 348 | GE11923-PA | 1..348 | 1..348 | 1680 | 90.2 | Plus |