Clone RE40519 Report

Search the DGRC for RE40519

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:405
Well:19
Vector:pFlc-1
Associated Gene/TranscriptFkbp14-RA
Protein status:RE40519.pep: gold
Sequenced Size:1314

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9847 2004-03-31 Blastp of sequenced clone
Fkbp13 2008-04-29 Release 5.5 accounting
Fkbp13 2008-08-15 Release 5.9 accounting
Fkbp13 2008-12-18 5.12 accounting

Clone Sequence Records

RE40519.complete Sequence

1314 bp (1314 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012468

> RE40519.complete
AGTTAAACTTGAGCAATTGCTTGAATAGGTTGTGTGTCCTTCGTGTTCCA
TATATTTTTCGTTTTTGTTACATTTTTCAAAACGATTATTAGCTTAATAA
AAAATGAATAACTTTTTGGAATACATTTCGGTATTACATTGTTCCTCCAT
GTCGAAATCCAATCTCGTTATCTCGTGCCTTCTGCTGGTGGCCATCAGCA
ACAGCCTGGTCCGGGCTCAGGATCTGAAAGTGGAGGTGATCAGCACGCCG
GAGGTGTGCGAACAAAAGTCCAAGAACGGCGATTCCCTCACCATGCACTA
CACTGGAACTCTGCAGGCCGATGGCAAGAAATTCGACTCGAGCTTCGACC
GCGACCAGCCCTTCACATTCCAATTGGGCGCCGGCCAGGTGATTAAGGGT
TGGGATCAGGGTCTGCTCAACATGTGCGTGGGTGAGAAGCGCAAGCTGAC
CATTCCTCCCCAGCTGGGCTATGGTGACCAGGGTGCCGGCAACGTGATAC
CGCCCAAGGCCACCCTCCTCTTCGATGTGGAGCTGATCAACATCGGCAAT
GCCCCGCCCACCACCAATGTGTTCAAGGAGATCGACGATAATGCCGACAA
GCAGCTGAGTCGCGAAGAGGTCAGCGAGTATCTAAAGAAGCAGATGACCG
CCGTGGAGGGACAGGATTCCGAGGAGCTGAAGAACATGCTGGCTGAGAAC
GACAAGCTGGTGGAGGAGATCTTTCAGCACGAGGATAAGGATAAGAACGG
TTTCATCTCGCACGATGAGTTCTCGGGACCCAAACACGACGAGCTGTAGT
GCTCAATAATGGGGGTTCTTGGTTTGCCGTCAACATCGAAGGGACACGAG
TGCTTAAGTTATATAAAACCCAAATATATACACAAAAATAGAACATATAC
AACAGATGAGGCACGAGCCGAGCAATAAATCGAGTGCAACCAAATGCTTC
CCGATGTCATTTTGTATATAGCATACATATCAGCATCAGCATCAGCATCT
GCATCTGCATCTAAACACCAACACATTAGAGGAGTGCATTAGTAGTTTGT
GTGTCTGTAACCCCGGTACTAGACGTAGTTTAAATTATGTACAATCTGAG
AGAGAATGAACATCATTTTTATATACATTTATAGGTTGTTATATATTTTG
TGTCGGCTGCGGGTGGTGACGATTTTTAGACCCATCGTAAAGATAATATC
GTATAATATCGTATATTGTAAATCAGACACACTCTCAAGACGAAGTCAAT
TGAAACACTTTAAATTGAATAAAGAATTGCTATCAATAATTTAACAAGAA
AAAAAAAAAAAAAA

RE40519.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Fkbp13-RC 1365 Fkbp13-RC 1..1299 1..1299 6495 100 Plus
Fkbp13-RA 1402 Fkbp13-RA 184..1336 147..1299 5765 100 Plus
Fkbp13.a 1310 Fkbp13.a 630..1309 620..1299 3400 100 Plus
Fkbp13.a 1310 Fkbp13.a 145..619 147..621 2375 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17373680..17374360 1298..618 3330 99.3 Minus
chr2R 21145070 chr2R 17381629..17381824 342..147 950 99 Minus
chr2R 21145070 chr2R 17374530..17374720 621..431 940 99.5 Minus
chr2R 21145070 chr2R 17384269..17384414 146..1 730 100 Minus
chr2R 21145070 chr2R 17374784..17374876 433..341 465 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21487166..21487847 1299..618 3410 100 Minus
2R 25286936 2R 21495131..21495326 342..147 980 100 Minus
2R 25286936 2R 21488017..21488207 621..431 955 100 Minus
2R 25286936 2R 21497781..21497926 146..1 730 100 Minus
2R 25286936 2R 21488271..21488363 433..341 465 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21488365..21489046 1299..618 3410 100 Minus
2R 25260384 2R 21496330..21496525 342..147 980 100 Minus
2R 25260384 2R 21489216..21489406 621..431 955 100 Minus
2R 25260384 2R 21498980..21499125 146..1 730 100 Minus
2R 25260384 2R 21489470..21489562 433..341 465 100 Minus
Blast to na_te.dros performed 2019-03-16 12:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2410 970..1023 112 70.4 Plus

RE40519.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:21:00 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17374786..17374874 343..431 100 <- Minus
chr2R 17381629..17381824 147..342 98 <- Minus
chr2R 17384269..17384414 1..146 100   Minus
chr2R 17373680..17374358 620..1298 99 <- Minus
chr2R 17374532..17374719 432..619 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:53:30 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp13-RC 1..651 149..799 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:06 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp13-RC 1..651 149..799 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:11:46 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp14-RC 1..651 149..799 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:52 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp13-RB 1..696 104..799 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:46 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp14-RC 1..651 149..799 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:29 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp13-RC 1..1298 1..1298 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:06 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp13-RC 1..1298 1..1298 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:11:46 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp14-RC 4..1301 1..1298 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:53 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp13-RB 1..1292 1..1292 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:46 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
Fkbp14-RC 4..1301 1..1298 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:21:00 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21487167..21487845 620..1298 100 <- Minus
2R 21488019..21488206 432..619 100 <- Minus
2R 21488273..21488361 343..431 100 <- Minus
2R 21495131..21495326 147..342 100 <- Minus
2R 21497781..21497926 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:21:00 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21487167..21487845 620..1298 100 <- Minus
2R 21488019..21488206 432..619 100 <- Minus
2R 21488273..21488361 343..431 100 <- Minus
2R 21495131..21495326 147..342 100 <- Minus
2R 21497781..21497926 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:21:00 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21487167..21487845 620..1298 100 <- Minus
2R 21488019..21488206 432..619 100 <- Minus
2R 21488273..21488361 343..431 100 <- Minus
2R 21495131..21495326 147..342 100 <- Minus
2R 21497781..21497926 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:11:46 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17374672..17375350 620..1298 100 <- Minus
arm_2R 17375524..17375711 432..619 100 <- Minus
arm_2R 17375778..17375866 343..431 100 <- Minus
arm_2R 17382636..17382831 147..342 100 <- Minus
arm_2R 17385286..17385431 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:19 Download gff for RE40519.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21488366..21489044 620..1298 100 <- Minus
2R 21489218..21489405 432..619 100 <- Minus
2R 21489472..21489560 343..431 100 <- Minus
2R 21496330..21496525 147..342 100 <- Minus
2R 21498980..21499125 1..146 100   Minus

RE40519.pep Sequence

Translation from 103 to 798

> RE40519.pep
MNNFLEYISVLHCSSMSKSNLVISCLLLVAISNSLVRAQDLKVEVISTPE
VCEQKSKNGDSLTMHYTGTLQADGKKFDSSFDRDQPFTFQLGAGQVIKGW
DQGLLNMCVGEKRKLTIPPQLGYGDQGAGNVIPPKATLLFDVELINIGNA
PPTTNVFKEIDDNADKQLSREEVSEYLKKQMTAVEGQDSEELKNMLAEND
KLVEEIFQHEDKDKNGFISHDEFSGPKHDEL*

RE40519.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12094-PA 214 GF12094-PA 1..214 16..231 1068 94 Plus
Dana\GF18389-PA 137 GF18389-PA 3..128 23..147 305 54.3 Plus
Dana\GF11585-PA 108 GF11585-PA 18..107 57..147 269 53.8 Plus
Dana\GF14673-PA 440 GF14673-PA 32..168 58..191 234 38.1 Plus
Dana\GF23032-PA 358 GF23032-PA 265..357 54..147 210 48.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20775-PA 231 GG20775-PA 1..231 1..231 1163 95.2 Plus
Dere\GG18343-PA 138 GG18343-PA 1..129 16..147 291 50.4 Plus
Dere\GG21957-PA 108 GG21957-PA 18..107 57..147 269 53.8 Plus
Dere\GG20671-PA 355 GG20671-PA 262..351 54..144 234 48.4 Plus
Dere\GG10059-PA 439 GG10059-PA 31..117 58..145 220 46.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20056-PA 212 GH20056-PA 4..212 20..231 984 89.2 Plus
Dgri\GH18265-PA 138 GH18265-PA 7..130 21..147 308 55.5 Plus
Dgri\GH23096-PA 108 GH23096-PA 1..107 41..147 270 48.1 Plus
Dgri\GH11297-PA 441 GH11297-PA 32..118 58..145 219 46.6 Plus
Dgri\GH21813-PA 365 GH21813-PA 261..361 36..144 212 46.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Fkbp14-PF 216 CG9847-PF 1..216 16..231 1117 100 Plus
Fkbp14-PE 216 CG9847-PE 1..216 16..231 1117 100 Plus
Fkbp14-PC 216 CG9847-PC 1..216 16..231 1117 100 Plus
Fkbp14-PA 216 CG9847-PA 1..216 16..231 1117 100 Plus
Fkbp14-PD 220 CG9847-PD 1..220 16..231 1102 98.2 Plus
CG14715-PA 138 CG14715-PA 8..129 26..147 324 52.8 Plus
Fkbp12-PA 108 CG11001-PA 18..107 57..147 269 53.8 Plus
Fkbp39-PA 357 CG6226-PA 264..353 54..144 220 47.3 Plus
Fkbp59-PB 439 CG4535-PB 31..117 58..145 211 46.6 Plus
Fkbp59-PA 439 CG4535-PA 31..117 58..145 211 46.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20465-PA 424 GI20465-PA 205..424 8..231 1007 85.3 Plus
Dmoj\GI24072-PA 139 GI24072-PA 5..130 24..147 303 54.3 Plus
Dmoj\GI18922-PA 108 GI18922-PA 18..107 57..147 266 52.7 Plus
Dmoj\GI21928-PA 370 GI21928-PA 266..366 36..144 229 43.1 Plus
Dmoj\GI17716-PA 441 GI17716-PA 33..118 59..145 217 46 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17491-PA 214 GL17491-PA 19..214 36..231 1025 96.9 Plus
Dper\GL22120-PA 139 GL22120-PA 3..130 23..147 292 51.9 Plus
Dper\GL17641-PA 108 GL17641-PA 18..107 57..147 264 52.7 Plus
Dper\GL24296-PA 342 GL24296-PA 251..341 56..147 231 46.7 Plus
Dper\GL18937-PA 440 GL18937-PA 32..118 58..145 222 46.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22070-PA 214 GA22070-PA 19..214 36..231 1025 96.9 Plus
Dpse\GA13197-PA 139 GA13197-PA 3..130 23..147 292 51.9 Plus
Dpse\GA10702-PA 108 GA10702-PA 18..107 57..147 264 52.7 Plus
Dpse\GA26561-PA 341 GA26561-PA 250..340 56..147 231 46.7 Plus
Dpse\GA18239-PA 440 GA18239-PA 32..118 58..145 222 46.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15719-PA 231 GM15719-PA 1..231 1..231 1199 97.8 Plus
Dsec\GM23968-PA 138 GM23968-PA 6..129 26..147 294 54.4 Plus
Dsec\GM21945-PA 108 GM21945-PA 18..107 57..147 269 53.8 Plus
Dsec\GM25784-PA 349 GM25784-PA 256..345 54..144 231 47.3 Plus
Dsec\GM17712-PA 439 GM17712-PA 31..117 58..145 220 46.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25197-PA 231 GD25197-PA 1..231 1..231 1205 98.3 Plus
Dsim\GD18774-PA 138 GD18774-PA 1..129 16..147 297 51.1 Plus
Dsim\GD20361-PA 348 GD20361-PA 255..344 54..144 229 47.3 Plus
Dsim\GD23632-PA 402 GD23632-PA 31..117 58..145 217 46.6 Plus
Dsim\GD11442-PA 137 GD11442-PA 18..86 57..126 207 52.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22316-PA 212 GJ22316-PA 4..212 20..231 991 88.7 Plus
Dvir\GJ10892-PA 138 GJ10892-PA 7..130 21..147 300 54.7 Plus
Dvir\GJ19778-PA 108 GJ19778-PA 18..107 57..147 270 53.8 Plus
Dvir\GJ17544-PA 441 GJ17544-PA 32..118 58..145 217 45.5 Plus
Dvir\GJ14288-PA 359 GJ14288-PA 268..355 56..144 195 47.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20742-PA 211 GK20742-PA 1..211 16..231 1043 92.1 Plus
Dwil\GK22382-PA 139 GK22382-PA 7..131 21..147 287 51.6 Plus
Dwil\GK20673-PA 108 GK20673-PA 1..107 41..147 267 47.2 Plus
Dwil\GK23813-PA 440 GK23813-PA 32..118 58..145 227 46.6 Plus
Dwil\GK11959-PA 358 GK11959-PA 265..357 54..147 208 46.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Fkbp13-PA 231 GE13712-PA 1..231 1..231 1170 95.7 Plus
Dyak\GE24193-PA 138 GE24193-PA 3..129 23..147 295 53.1 Plus
Dyak\FK506-bp2-PA 108 GE12036-PA 18..107 57..147 269 53.8 Plus
Dyak\GE26389-PA 353 GE26389-PA 260..349 54..144 231 47.3 Plus
Dyak\FKBP59-PA 439 GE18873-PA 31..117 58..145 221 46.6 Plus

RE40519.hyp Sequence

Translation from 103 to 798

> RE40519.hyp
MNNFLEYISVLHCSSMSKSNLVISCLLLVAISNSLVRAQDLKVEVISTPE
VCEQKSKNGDSLTMHYTGTLQADGKKFDSSFDRDQPFTFQLGAGQVIKGW
DQGLLNMCVGEKRKLTIPPQLGYGDQGAGNVIPPKATLLFDVELINIGNA
PPTTNVFKEIDDNADKQLSREEVSEYLKKQMTAVEGQDSEELKNMLAEND
KLVEEIFQHEDKDKNGFISHDEFSGPKHDEL*

RE40519.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Fkbp14-PF 216 CG9847-PF 1..216 16..231 1117 100 Plus
Fkbp14-PE 216 CG9847-PE 1..216 16..231 1117 100 Plus
Fkbp14-PC 216 CG9847-PC 1..216 16..231 1117 100 Plus
Fkbp14-PA 216 CG9847-PA 1..216 16..231 1117 100 Plus
Fkbp14-PD 220 CG9847-PD 1..220 16..231 1102 98.2 Plus