Clone RE40534 Report

Search the DGRC for RE40534

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:405
Well:34
Vector:pFlc-1
Associated Gene/TranscriptCG1882-RA
Protein status:RE40534.pep: gold
Preliminary Size:1659
Sequenced Size:1968

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1882 2002-01-01 Sim4 clustering to Release 2
CG1882 2004-09-29 Blastp of sequenced clone
CG1882 2008-04-29 Release 5.5 accounting
CG1882 2008-08-15 Release 5.9 accounting
CG1882 2008-12-18 5.12 accounting

Clone Sequence Records

RE40534.complete Sequence

1968 bp (1968 high quality bases) assembled on 2004-09-29

GenBank Submission: BT016001

> RE40534.complete
AGTCGCTCTTCCCAGTAGACTTGCAGCAACAACAACAAGTATTTCACCAT
TAGAATAGATAACATGTAATTGCGACACGGAACTTGAATCAGAGCAAGCC
AGGCCACTTTCCGCGGAACACTAGCAGAAGTACAAAGTCATCCCAACTCG
GCAGTACTAGTGCTACAAATCCGAATTCACTCCCGTGTCAGTATTCATGA
AACTCTCGACTTTCGACGGGTACGCACGTATGTAGCGCGCAAATGTTGGC
AAAACATTATTGTTAGGATACCACACTCCCCCCGCACACACCCTAACCTT
GTGGCAATAGAAATCAGCAGTGAGAGATCAGATCGATCGGATCGTGAGCG
AGATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCGTGGTGGATCCAACG
GCCGCATCCACCAGCGTCACTATTTCGAACCTGCCACAGCCAACAGTTGC
GCTGGGATCGGAATCTAAATCGTCCATGGACCTAGAGGATCCCCGGAACA
ATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGACATCCAGCTCACCA
ACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGTACGTGAAGCTGCC
CTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTGGGCGAAGCGGATA
AGATCTGGACCATCAGCATGAATACCGAGTCCAAGGAGGTGCCGCTGGTG
CTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGGTGATGAACCTCGA
TGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGACATCCTCGGATTCG
GTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCTGGTGTGCGAGAAG
CAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGATGAACATCAACGA
CATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATTGCCTCCAGCTACG
CCCTCTCACATCCGGAGCGTGTGAAACACCTCATACTAGCCGATCCCTGG
GGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCAAAACAATACCGCT
CTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTAAATCCGTTGTGGG
CTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGTGCAAAAGACGCGG
CCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGGAGGATATCAACTT
GCTGCCGCAGTACATACACCAGTGCAATGCGCAGAATCCCAGCGGTGAGT
CCGCCTTCCACACAATGATGCAATCCTTTGGATGGGCCAAGCACCCCATG
ATTCACCGCATCAAGGACGTGCGCAGCGACATACCAATCACGTTCATCTA
CGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGAGAAGATCAAGTCGC
AGCGCGGCAGCAATATGGTGGACATCAAGATCGTGACGGGCGCCGGCCAC
CACGTATATGCCGACAAGCCGGACGTGTTCAACCGCTACGTGAACGAGAC
CTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGATAACGCCCCTGCAGC
TAATCCGCGAATCCACCGAGTCCGACGAGGAGCGCGAGCCCAGCCTGAGC
ACAGCGAAGACGGTCGAGGTCCAGCCAGAAGTCCAGCCGGTGCCCCAACC
TGTCACCGCAGCCGACACATCCACGCCGACCGCCGACGAACTGGCGGCGA
ACATCAAACCGAAGTGAGCAGAAGCAGCGGCATTCGCTGAGAACCAAACA
AAAATCACAGCTCGCCTGCCAGCCTGTATCTATTAGCTTAGTGTCTTTGC
CTAGTATTAAATGGTCATCTTATCCAATTAGCCGCTATTTTTACTCTACA
GTCAGAAATGAAGCCCTATTCTTATTTATATTTTTGAGATTTTCAAGTTA
TACGCACTGTTTTTAAATAGCTTAAATATATATCTATTTTTGTTAGCAAA
TCAAAAAAAAAAAAAAAA

RE40534.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RA 2368 CG1882-RA 80..2033 1..1954 9770 100 Plus
CG1882.c 2642 CG1882.c 80..2033 1..1954 9770 100 Plus
CG1882.a 2469 CG1882.a 80..2033 1..1954 9770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3700600..3702066 486..1952 7320 99.9 Plus
chr2R 21145070 chr2R 3699827..3700314 1..488 2425 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813279..7814747 486..1954 7345 100 Plus
2R 25286936 2R 7812506..7812993 1..488 2440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7814478..7815946 486..1954 7345 100 Plus
2R 25260384 2R 7813705..7814192 1..488 2440 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:44:15 has no hits.

RE40534.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:45:05 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3699827..3700313 1..487 99 -> Plus
chr2R 3700602..3702066 488..1952 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:19 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1365 353..1717 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:02 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1365 353..1717 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:31:29 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1365 353..1717 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:51 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1365 353..1717 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:01 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1365 353..1717 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:37:02 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1952 1..1952 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:01 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1952 1..1952 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:31:29 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 3..1954 1..1952 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:51 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1952 1..1952 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:01 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 3..1954 1..1952 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:45:05 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7812506..7812992 1..487 100 -> Plus
2R 7813281..7814745 488..1952 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:45:05 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7812506..7812992 1..487 100 -> Plus
2R 7813281..7814745 488..1952 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:45:05 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7812506..7812992 1..487 100 -> Plus
2R 7813281..7814745 488..1952 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:31:29 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3700011..3700497 1..487 100 -> Plus
arm_2R 3700786..3702250 488..1952 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:52:48 Download gff for RE40534.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7813705..7814191 1..487 100 -> Plus
2R 7814480..7815944 488..1952 100   Plus

RE40534.hyp Sequence

Translation from 352 to 1716

> RE40534.hyp
MSEPLALASGGVVDPTAASTSVTISNLPQPTVALGSESKSSMDLEDPRNN
RFFLWKWLCNWTSSSPTMLRAVEKKILSYVKLPYRGFFVDIGPAVGEADK
IWTISMNTESKEVPLVLLHGLGAGIALWVMNLDAFAKGRPVYAMDILGFG
RSSRPLFAKDALVCEKQFVKSVEEWRREMNINDMILLGHSMGGFIASSYA
LSHPERVKHLILADPWGFPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWA
LRAAGPFGQWVVQKTRPDIMRKFQSTIEEDINLLPQYIHQCNAQNPSGES
AFHTMMQSFGWAKHPMIHRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQ
RGSNMVDIKIVTGAGHHVYADKPDVFNRYVNETCDMYKVAGGKLITPLQL
IRESTESDEEREPSLSTAKTVEVQPEVQPVPQPVTAADTSTPTADELAAN
IKPK*

RE40534.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PG 454 CG1882-PG 1..454 1..454 2383 100 Plus
CG1882-PF 454 CG1882-PF 1..454 1..454 2383 100 Plus
CG1882-PA 454 CG1882-PA 1..454 1..454 2383 100 Plus
CG1882-PE 387 CG1882-PE 1..387 68..454 2031 100 Plus
CG1882-PB 387 CG1882-PB 1..387 68..454 2031 100 Plus

RE40534.pep Sequence

Translation from 352 to 1716

> RE40534.pep
MSEPLALASGGVVDPTAASTSVTISNLPQPTVALGSESKSSMDLEDPRNN
RFFLWKWLCNWTSSSPTMLRAVEKKILSYVKLPYRGFFVDIGPAVGEADK
IWTISMNTESKEVPLVLLHGLGAGIALWVMNLDAFAKGRPVYAMDILGFG
RSSRPLFAKDALVCEKQFVKSVEEWRREMNINDMILLGHSMGGFIASSYA
LSHPERVKHLILADPWGFPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWA
LRAAGPFGQWVVQKTRPDIMRKFQSTIEEDINLLPQYIHQCNAQNPSGES
AFHTMMQSFGWAKHPMIHRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQ
RGSNMVDIKIVTGAGHHVYADKPDVFNRYVNETCDMYKVAGGKLITPLQL
IRESTESDEEREPSLSTAKTVEVQPEVQPVPQPVTAADTSTPTADELAAN
IKPK*

RE40534.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13636-PA 463 GF13636-PA 1..463 1..454 2054 85.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23305-PA 454 GG23305-PA 1..454 1..454 2319 95.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20321-PA 444 GH20321-PA 23..415 41..427 1848 86.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PG 454 CG1882-PG 1..454 1..454 2383 100 Plus
CG1882-PF 454 CG1882-PF 1..454 1..454 2383 100 Plus
CG1882-PA 454 CG1882-PA 1..454 1..454 2383 100 Plus
CG1882-PE 387 CG1882-PE 1..387 68..454 2031 100 Plus
CG1882-PB 387 CG1882-PB 1..387 68..454 2031 100 Plus
CG1882-PD 387 CG1882-PD 1..387 68..454 2031 100 Plus
CG1882-PC 387 CG1882-PC 1..387 68..454 2031 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19993-PA 476 GI19993-PA 23..437 41..449 1833 81.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10842-PA 446 GL10842-PA 1..446 1..454 2036 85.1 Plus
Dper\GL25694-PA 343 GL25694-PA 25..338 56..384 691 40.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15096-PA 446 GA15096-PA 1..446 1..454 2036 85.1 Plus
Dpse\GA25396-PA 343 GA25396-PA 25..338 56..384 695 40.1 Plus
Dpse\GA29248-PA 343 GA29248-PA 25..338 56..384 691 39.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20984-PA 454 GM20984-PA 1..454 1..454 2394 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10511-PA 439 GD10511-PA 1..439 1..454 2265 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21242-PA 455 GJ21242-PA 23..415 41..430 1873 88 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22221-PA 460 GK22221-PA 22..460 30..454 1842 79 Plus
Dwil\GK14854-PA 358 GK14854-PA 6..341 31..385 671 37.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19151-PA 454 GE19151-PA 1..454 1..454 2340 96.3 Plus