BDGP Sequence Production Resources |
Search the DGRC for RE40534
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 405 |
Well: | 34 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1882-RA |
Protein status: | RE40534.pep: gold |
Preliminary Size: | 1659 |
Sequenced Size: | 1968 |
Gene | Date | Evidence |
---|---|---|
CG1882 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1882 | 2004-09-29 | Blastp of sequenced clone |
CG1882 | 2008-04-29 | Release 5.5 accounting |
CG1882 | 2008-08-15 | Release 5.9 accounting |
CG1882 | 2008-12-18 | 5.12 accounting |
1968 bp (1968 high quality bases) assembled on 2004-09-29
GenBank Submission: BT016001
> RE40534.complete AGTCGCTCTTCCCAGTAGACTTGCAGCAACAACAACAAGTATTTCACCAT TAGAATAGATAACATGTAATTGCGACACGGAACTTGAATCAGAGCAAGCC AGGCCACTTTCCGCGGAACACTAGCAGAAGTACAAAGTCATCCCAACTCG GCAGTACTAGTGCTACAAATCCGAATTCACTCCCGTGTCAGTATTCATGA AACTCTCGACTTTCGACGGGTACGCACGTATGTAGCGCGCAAATGTTGGC AAAACATTATTGTTAGGATACCACACTCCCCCCGCACACACCCTAACCTT GTGGCAATAGAAATCAGCAGTGAGAGATCAGATCGATCGGATCGTGAGCG AGATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCGTGGTGGATCCAACG GCCGCATCCACCAGCGTCACTATTTCGAACCTGCCACAGCCAACAGTTGC GCTGGGATCGGAATCTAAATCGTCCATGGACCTAGAGGATCCCCGGAACA ATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGACATCCAGCTCACCA ACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGTACGTGAAGCTGCC CTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTGGGCGAAGCGGATA AGATCTGGACCATCAGCATGAATACCGAGTCCAAGGAGGTGCCGCTGGTG CTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGGTGATGAACCTCGA TGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGACATCCTCGGATTCG GTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCTGGTGTGCGAGAAG CAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGATGAACATCAACGA CATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATTGCCTCCAGCTACG CCCTCTCACATCCGGAGCGTGTGAAACACCTCATACTAGCCGATCCCTGG GGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCAAAACAATACCGCT CTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTAAATCCGTTGTGGG CTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGTGCAAAAGACGCGG CCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGGAGGATATCAACTT GCTGCCGCAGTACATACACCAGTGCAATGCGCAGAATCCCAGCGGTGAGT CCGCCTTCCACACAATGATGCAATCCTTTGGATGGGCCAAGCACCCCATG ATTCACCGCATCAAGGACGTGCGCAGCGACATACCAATCACGTTCATCTA CGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGAGAAGATCAAGTCGC AGCGCGGCAGCAATATGGTGGACATCAAGATCGTGACGGGCGCCGGCCAC CACGTATATGCCGACAAGCCGGACGTGTTCAACCGCTACGTGAACGAGAC CTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGATAACGCCCCTGCAGC TAATCCGCGAATCCACCGAGTCCGACGAGGAGCGCGAGCCCAGCCTGAGC ACAGCGAAGACGGTCGAGGTCCAGCCAGAAGTCCAGCCGGTGCCCCAACC TGTCACCGCAGCCGACACATCCACGCCGACCGCCGACGAACTGGCGGCGA ACATCAAACCGAAGTGAGCAGAAGCAGCGGCATTCGCTGAGAACCAAACA AAAATCACAGCTCGCCTGCCAGCCTGTATCTATTAGCTTAGTGTCTTTGC CTAGTATTAAATGGTCATCTTATCCAATTAGCCGCTATTTTTACTCTACA GTCAGAAATGAAGCCCTATTCTTATTTATATTTTTGAGATTTTCAAGTTA TACGCACTGTTTTTAAATAGCTTAAATATATATCTATTTTTGTTAGCAAA TCAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3699827..3700313 | 1..487 | 99 | -> | Plus |
chr2R | 3700602..3702066 | 488..1952 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 1..1365 | 353..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 1..1365 | 353..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 1..1365 | 353..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 1..1365 | 353..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 1..1365 | 353..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 1..1952 | 1..1952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 1..1952 | 1..1952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 3..1954 | 1..1952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 1..1952 | 1..1952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1882-RA | 3..1954 | 1..1952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7812506..7812992 | 1..487 | 100 | -> | Plus |
2R | 7813281..7814745 | 488..1952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7812506..7812992 | 1..487 | 100 | -> | Plus |
2R | 7813281..7814745 | 488..1952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7812506..7812992 | 1..487 | 100 | -> | Plus |
2R | 7813281..7814745 | 488..1952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3700011..3700497 | 1..487 | 100 | -> | Plus |
arm_2R | 3700786..3702250 | 488..1952 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7813705..7814191 | 1..487 | 100 | -> | Plus |
2R | 7814480..7815944 | 488..1952 | 100 | Plus |
Translation from 352 to 1716
> RE40534.hyp MSEPLALASGGVVDPTAASTSVTISNLPQPTVALGSESKSSMDLEDPRNN RFFLWKWLCNWTSSSPTMLRAVEKKILSYVKLPYRGFFVDIGPAVGEADK IWTISMNTESKEVPLVLLHGLGAGIALWVMNLDAFAKGRPVYAMDILGFG RSSRPLFAKDALVCEKQFVKSVEEWRREMNINDMILLGHSMGGFIASSYA LSHPERVKHLILADPWGFPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWA LRAAGPFGQWVVQKTRPDIMRKFQSTIEEDINLLPQYIHQCNAQNPSGES AFHTMMQSFGWAKHPMIHRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQ RGSNMVDIKIVTGAGHHVYADKPDVFNRYVNETCDMYKVAGGKLITPLQL IRESTESDEEREPSLSTAKTVEVQPEVQPVPQPVTAADTSTPTADELAAN IKPK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1882-PG | 454 | CG1882-PG | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PF | 454 | CG1882-PF | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PA | 454 | CG1882-PA | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PE | 387 | CG1882-PE | 1..387 | 68..454 | 2031 | 100 | Plus |
CG1882-PB | 387 | CG1882-PB | 1..387 | 68..454 | 2031 | 100 | Plus |
Translation from 352 to 1716
> RE40534.pep MSEPLALASGGVVDPTAASTSVTISNLPQPTVALGSESKSSMDLEDPRNN RFFLWKWLCNWTSSSPTMLRAVEKKILSYVKLPYRGFFVDIGPAVGEADK IWTISMNTESKEVPLVLLHGLGAGIALWVMNLDAFAKGRPVYAMDILGFG RSSRPLFAKDALVCEKQFVKSVEEWRREMNINDMILLGHSMGGFIASSYA LSHPERVKHLILADPWGFPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWA LRAAGPFGQWVVQKTRPDIMRKFQSTIEEDINLLPQYIHQCNAQNPSGES AFHTMMQSFGWAKHPMIHRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQ RGSNMVDIKIVTGAGHHVYADKPDVFNRYVNETCDMYKVAGGKLITPLQL IRESTESDEEREPSLSTAKTVEVQPEVQPVPQPVTAADTSTPTADELAAN IKPK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13636-PA | 463 | GF13636-PA | 1..463 | 1..454 | 2054 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23305-PA | 454 | GG23305-PA | 1..454 | 1..454 | 2319 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20321-PA | 444 | GH20321-PA | 23..415 | 41..427 | 1848 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1882-PG | 454 | CG1882-PG | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PF | 454 | CG1882-PF | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PA | 454 | CG1882-PA | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PE | 387 | CG1882-PE | 1..387 | 68..454 | 2031 | 100 | Plus |
CG1882-PB | 387 | CG1882-PB | 1..387 | 68..454 | 2031 | 100 | Plus |
CG1882-PD | 387 | CG1882-PD | 1..387 | 68..454 | 2031 | 100 | Plus |
CG1882-PC | 387 | CG1882-PC | 1..387 | 68..454 | 2031 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19993-PA | 476 | GI19993-PA | 23..437 | 41..449 | 1833 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10842-PA | 446 | GL10842-PA | 1..446 | 1..454 | 2036 | 85.1 | Plus |
Dper\GL25694-PA | 343 | GL25694-PA | 25..338 | 56..384 | 691 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15096-PA | 446 | GA15096-PA | 1..446 | 1..454 | 2036 | 85.1 | Plus |
Dpse\GA25396-PA | 343 | GA25396-PA | 25..338 | 56..384 | 695 | 40.1 | Plus |
Dpse\GA29248-PA | 343 | GA29248-PA | 25..338 | 56..384 | 691 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20984-PA | 454 | GM20984-PA | 1..454 | 1..454 | 2394 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10511-PA | 439 | GD10511-PA | 1..439 | 1..454 | 2265 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21242-PA | 455 | GJ21242-PA | 23..415 | 41..430 | 1873 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22221-PA | 460 | GK22221-PA | 22..460 | 30..454 | 1842 | 79 | Plus |
Dwil\GK14854-PA | 358 | GK14854-PA | 6..341 | 31..385 | 671 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19151-PA | 454 | GE19151-PA | 1..454 | 1..454 | 2340 | 96.3 | Plus |