BDGP Sequence Production Resources |
Search the DGRC for RE40543
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 405 |
Well: | 43 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5869-RA |
Protein status: | RE40543.pep: gold |
Sequenced Size: | 1039 |
Gene | Date | Evidence |
---|---|---|
CG5869 | 2004-04-27 | Blastp of sequenced clone |
CG5869 | 2008-04-29 | Release 5.5 accounting |
CG5869 | 2008-08-15 | Release 5.9 accounting |
CG5869 | 2008-12-18 | 5.12 accounting |
1039 bp (1039 high quality bases) assembled on 2004-04-27
GenBank Submission: BT014645
> RE40543.complete GTTATTTGGCGTTCAGTGAACGGTCTCACTGCAGGAACAACAAAACAAAA CTCAGAATAAACGACAGTATTTAAACGATTCCTTAAGGACAAGTGATATT GCATTCCTACAATTAACTGTCAAAAATTCGGTAGTGCAGCACACTTTACA GATCGCATCCCTAACTTCATAGCTAAAGTTATGAGTGATAACCAGATATG CGACATAAGCAACGAAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCA AGAGCAAAAATAATGCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAA ACGGTGGTGCTGGACGAGTTCATCGACGATATTTCGGTGGACGAGCTGCA GGATACATTGCCAGGACACCAGCCCCGATATGTCATCTATACGTATAAAA TGGTCCATGACGATCAGCGCATTTCGTACCCAATGTGCTTCATATTCTAC ACACCCAGGGATAGCCAGATCGAATTGCAGATGATGTACGCCTGCACGAA GAGCGCTCTTCAGCGCGAAGTAGATCTCACACGCGTCTACGAGATACGCG AACTAGACGAACTCACCGAGGAGTGGCTGAAAGCCAAGCTCAAGTAGAGA GGTTTCGATCTCTGGGATCAATCAATCCGGGCCGTTGTCAAAAGCAATAT TTTATGATAGTTCTCTGATTGATTTTTGAGCTTTTTATATACATATTCAA ACTGGATTAAGCCGATACCAACGATGCATACCAATACCAAACAAACCAAT ATTGAGATACTACAATTTTTACCTACAGAAAACACAAATCAAGCTTAGTT TATACAACAATGACATTTTTATATCGACGACAAGTATGCGACAAGTACGC GCGGGGAGTTTTTAGTGATTTTAGTTCTTGCATTTAAGTAATAATCTTAA TAGAAGCTGTGCTTGCCAAATTTCTACATGTATTTATTGTAAAGATATAA AAGCAAACATGACAAAATATTCCATTTTATATAGACAAACTAAATAAAAG TGTTCAATATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5869-RA | 1062 | CG5869-RA | 21..1034 | 2..1015 | 5055 | 99.9 | Plus |
CG17328-RA | 1539 | CG17328-RA | 1382..1539 | 1015..858 | 790 | 100 | Minus |
CG17328.a | 1342 | CG17328.a | 1236..1342 | 1015..909 | 535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 16300518..16301063 | 1011..466 | 2730 | 100 | Minus |
chr2L | 23010047 | chr2L | 16301123..16301313 | 468..278 | 955 | 100 | Minus |
chr2L | 23010047 | chr2L | 16301633..16301814 | 183..2 | 895 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 16301380..16301474 | 277..183 | 475 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 16301659..16302208 | 1015..466 | 2750 | 100 | Minus |
2L | 23513712 | 2L | 16302261..16302451 | 468..278 | 955 | 100 | Minus |
2L | 23513712 | 2L | 16302771..16302952 | 183..2 | 895 | 99.5 | Minus |
2L | 23513712 | 2L | 16302518..16302612 | 277..183 | 475 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 16301659..16302208 | 1015..466 | 2750 | 100 | Minus |
2L | 23513712 | 2L | 16302261..16302451 | 468..278 | 955 | 100 | Minus |
2L | 23513712 | 2L | 16302771..16302952 | 183..2 | 895 | 99.4 | Minus |
2L | 23513712 | 2L | 16302518..16302612 | 277..183 | 475 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 16301380..16301473 | 184..277 | 100 | <- | Minus |
chr2L | 16301633..16301814 | 1..183 | 98 | Minus | |
chr2L | 16300518..16301060 | 469..1011 | 100 | <- | Minus |
chr2L | 16301123..16301313 | 278..468 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 1..417 | 181..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 1..417 | 181..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 1..417 | 181..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 1..417 | 181..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 1..417 | 181..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 1..1010 | 2..1011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 1..1010 | 2..1011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 2..1012 | 1..1011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 1..1010 | 2..1011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5869-RA | 2..1012 | 1..1011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16301663..16302205 | 469..1011 | 100 | <- | Minus |
2L | 16302261..16302451 | 278..468 | 100 | <- | Minus |
2L | 16302518..16302611 | 184..277 | 100 | <- | Minus |
2L | 16302771..16302952 | 1..183 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16301663..16302205 | 469..1011 | 100 | <- | Minus |
2L | 16302261..16302451 | 278..468 | 100 | <- | Minus |
2L | 16302518..16302611 | 184..277 | 100 | <- | Minus |
2L | 16302771..16302952 | 1..183 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16301663..16302205 | 469..1011 | 100 | <- | Minus |
2L | 16302261..16302451 | 278..468 | 100 | <- | Minus |
2L | 16302518..16302611 | 184..277 | 100 | <- | Minus |
2L | 16302771..16302952 | 1..183 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 16302771..16302952 | 1..183 | 98 | Minus | |
arm_2L | 16302261..16302451 | 278..468 | 100 | <- | Minus |
arm_2L | 16302518..16302611 | 184..277 | 100 | <- | Minus |
arm_2L | 16301663..16302205 | 469..1011 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16301663..16302205 | 469..1011 | 100 | <- | Minus |
2L | 16302261..16302451 | 278..468 | 100 | <- | Minus |
2L | 16302518..16302611 | 184..277 | 100 | <- | Minus |
2L | 16302771..16302952 | 1..183 | 98 | Minus |
Translation from 180 to 596
> RE40543.hyp MSDNQICDISNEVLEELKKFRFSKSKNNAALILKVDREKQTVVLDEFIDD ISVDELQDTLPGHQPRYVIYTYKMVHDDQRISYPMCFIFYTPRDSQIELQ MMYACTKSALQREVDLTRVYEIRELDELTEEWLKAKLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5869-PA | 138 | CG5869-PA | 1..138 | 1..138 | 713 | 100 | Plus |
Translation from 180 to 596
> RE40543.pep MSDNQICDISNEVLEELKKFRFSKSKNNAALILKVDREKQTVVLDEFIDD ISVDELQDTLPGHQPRYVIYTYKMVHDDQRISYPMCFIFYTPRDSQIELQ MMYACTKSALQREVDLTRVYEIRELDELTEEWLKAKLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15327-PA | 138 | GF15327-PA | 1..138 | 1..138 | 699 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24175-PA | 138 | GG24175-PA | 1..138 | 1..138 | 712 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11432-PA | 138 | GH11432-PA | 1..138 | 1..138 | 702 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GMF-PA | 138 | CG5869-PA | 1..138 | 1..138 | 713 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14715-PA | 143 | GI14715-PA | 7..143 | 2..138 | 678 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14094-PA | 142 | GL14094-PA | 6..142 | 2..138 | 692 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19191-PA | 137 | GA19191-PA | 1..137 | 2..138 | 689 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17913-PA | 138 | GM17913-PA | 1..138 | 1..138 | 727 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21923-PA | 138 | GD21923-PA | 1..138 | 1..138 | 727 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17165-PA | 137 | GJ17165-PA | 1..137 | 2..138 | 684 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24743-PA | 138 | GK24743-PA | 1..138 | 1..138 | 667 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19369-PA | 138 | GE19369-PA | 1..138 | 1..138 | 720 | 98.6 | Plus |