Clone RE40543 Report

Search the DGRC for RE40543

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:405
Well:43
Vector:pFlc-1
Associated Gene/TranscriptCG5869-RA
Protein status:RE40543.pep: gold
Sequenced Size:1039

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5869 2004-04-27 Blastp of sequenced clone
CG5869 2008-04-29 Release 5.5 accounting
CG5869 2008-08-15 Release 5.9 accounting
CG5869 2008-12-18 5.12 accounting

Clone Sequence Records

RE40543.complete Sequence

1039 bp (1039 high quality bases) assembled on 2004-04-27

GenBank Submission: BT014645

> RE40543.complete
GTTATTTGGCGTTCAGTGAACGGTCTCACTGCAGGAACAACAAAACAAAA
CTCAGAATAAACGACAGTATTTAAACGATTCCTTAAGGACAAGTGATATT
GCATTCCTACAATTAACTGTCAAAAATTCGGTAGTGCAGCACACTTTACA
GATCGCATCCCTAACTTCATAGCTAAAGTTATGAGTGATAACCAGATATG
CGACATAAGCAACGAAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCA
AGAGCAAAAATAATGCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAA
ACGGTGGTGCTGGACGAGTTCATCGACGATATTTCGGTGGACGAGCTGCA
GGATACATTGCCAGGACACCAGCCCCGATATGTCATCTATACGTATAAAA
TGGTCCATGACGATCAGCGCATTTCGTACCCAATGTGCTTCATATTCTAC
ACACCCAGGGATAGCCAGATCGAATTGCAGATGATGTACGCCTGCACGAA
GAGCGCTCTTCAGCGCGAAGTAGATCTCACACGCGTCTACGAGATACGCG
AACTAGACGAACTCACCGAGGAGTGGCTGAAAGCCAAGCTCAAGTAGAGA
GGTTTCGATCTCTGGGATCAATCAATCCGGGCCGTTGTCAAAAGCAATAT
TTTATGATAGTTCTCTGATTGATTTTTGAGCTTTTTATATACATATTCAA
ACTGGATTAAGCCGATACCAACGATGCATACCAATACCAAACAAACCAAT
ATTGAGATACTACAATTTTTACCTACAGAAAACACAAATCAAGCTTAGTT
TATACAACAATGACATTTTTATATCGACGACAAGTATGCGACAAGTACGC
GCGGGGAGTTTTTAGTGATTTTAGTTCTTGCATTTAAGTAATAATCTTAA
TAGAAGCTGTGCTTGCCAAATTTCTACATGTATTTATTGTAAAGATATAA
AAGCAAACATGACAAAATATTCCATTTTATATAGACAAACTAAATAAAAG
TGTTCAATATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RE40543.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-RA 1062 CG5869-RA 21..1034 2..1015 5055 99.9 Plus
CG17328-RA 1539 CG17328-RA 1382..1539 1015..858 790 100 Minus
CG17328.a 1342 CG17328.a 1236..1342 1015..909 535 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16300518..16301063 1011..466 2730 100 Minus
chr2L 23010047 chr2L 16301123..16301313 468..278 955 100 Minus
chr2L 23010047 chr2L 16301633..16301814 183..2 895 99.5 Minus
chr2L 23010047 chr2L 16301380..16301474 277..183 475 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16301659..16302208 1015..466 2750 100 Minus
2L 23513712 2L 16302261..16302451 468..278 955 100 Minus
2L 23513712 2L 16302771..16302952 183..2 895 99.5 Minus
2L 23513712 2L 16302518..16302612 277..183 475 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16301659..16302208 1015..466 2750 100 Minus
2L 23513712 2L 16302261..16302451 468..278 955 100 Minus
2L 23513712 2L 16302771..16302952 183..2 895 99.4 Minus
2L 23513712 2L 16302518..16302612 277..183 475 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:30:10 has no hits.

RE40543.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:30:53 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16301380..16301473 184..277 100 <- Minus
chr2L 16301633..16301814 1..183 98   Minus
chr2L 16300518..16301060 469..1011 100 <- Minus
chr2L 16301123..16301313 278..468 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:20 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 1..417 181..597 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:48:01 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 1..417 181..597 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:46:19 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 1..417 181..597 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:29:10 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 1..417 181..597 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:45 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 1..417 181..597 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:57:41 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 1..1010 2..1011 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:48:00 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 1..1010 2..1011 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:46:19 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 2..1012 1..1011 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:29:10 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 1..1010 2..1011 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:45 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 2..1012 1..1011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:53 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16301663..16302205 469..1011 100 <- Minus
2L 16302261..16302451 278..468 100 <- Minus
2L 16302518..16302611 184..277 100 <- Minus
2L 16302771..16302952 1..183 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:53 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16301663..16302205 469..1011 100 <- Minus
2L 16302261..16302451 278..468 100 <- Minus
2L 16302518..16302611 184..277 100 <- Minus
2L 16302771..16302952 1..183 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:53 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16301663..16302205 469..1011 100 <- Minus
2L 16302261..16302451 278..468 100 <- Minus
2L 16302518..16302611 184..277 100 <- Minus
2L 16302771..16302952 1..183 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:46:19 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16302771..16302952 1..183 98   Minus
arm_2L 16302261..16302451 278..468 100 <- Minus
arm_2L 16302518..16302611 184..277 100 <- Minus
arm_2L 16301663..16302205 469..1011 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:06:19 Download gff for RE40543.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16301663..16302205 469..1011 100 <- Minus
2L 16302261..16302451 278..468 100 <- Minus
2L 16302518..16302611 184..277 100 <- Minus
2L 16302771..16302952 1..183 98   Minus

RE40543.hyp Sequence

Translation from 180 to 596

> RE40543.hyp
MSDNQICDISNEVLEELKKFRFSKSKNNAALILKVDREKQTVVLDEFIDD
ISVDELQDTLPGHQPRYVIYTYKMVHDDQRISYPMCFIFYTPRDSQIELQ
MMYACTKSALQREVDLTRVYEIRELDELTEEWLKAKLK*

RE40543.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-PA 138 CG5869-PA 1..138 1..138 713 100 Plus

RE40543.pep Sequence

Translation from 180 to 596

> RE40543.pep
MSDNQICDISNEVLEELKKFRFSKSKNNAALILKVDREKQTVVLDEFIDD
ISVDELQDTLPGHQPRYVIYTYKMVHDDQRISYPMCFIFYTPRDSQIELQ
MMYACTKSALQREVDLTRVYEIRELDELTEEWLKAKLK*

RE40543.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15327-PA 138 GF15327-PA 1..138 1..138 699 94.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24175-PA 138 GG24175-PA 1..138 1..138 712 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11432-PA 138 GH11432-PA 1..138 1..138 702 94.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
GMF-PA 138 CG5869-PA 1..138 1..138 713 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14715-PA 143 GI14715-PA 7..143 2..138 678 92.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14094-PA 142 GL14094-PA 6..142 2..138 692 94.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19191-PA 137 GA19191-PA 1..137 2..138 689 94.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17913-PA 138 GM17913-PA 1..138 1..138 727 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21923-PA 138 GD21923-PA 1..138 1..138 727 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17165-PA 137 GJ17165-PA 1..137 2..138 684 92.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24743-PA 138 GK24743-PA 1..138 1..138 667 89.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19369-PA 138 GE19369-PA 1..138 1..138 720 98.6 Plus