BDGP Sequence Production Resources |
Search the DGRC for RE40567
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 405 |
Well: | 67 |
Vector: | pFlc-1 |
Associated Gene/Transcript | nac-RA |
Protein status: | RE40567.pep: gold |
Preliminary Size: | 1014 |
Sequenced Size: | 1229 |
Gene | Date | Evidence |
---|---|---|
CG9620 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9620 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9620 | 2003-02-05 | Blastp of sequenced clone |
Gfr | 2008-04-29 | Release 5.5 accounting |
Gfr | 2008-08-15 | Release 5.9 accounting |
Gfr | 2008-12-18 | 5.12 accounting |
1229 bp (1229 high quality bases) assembled on 2003-02-05
GenBank Submission: BT003501
> RE40567.complete AGACCGGGTAGCAGATACGTGTAAAAATAAACGCACAATTACTTTTGGCT CGCACAAATTGCTCTGCAATTCCTAAAAACTCCGAAATGTACAAGAATCT GGAGGAGCACAACCGGCTGGTTAACAAATACCTAAAGATATTCTTCGTCG TGTCGCTCTACTGGTGCACCTCGATATTGACGGTATTCGTAAATAAGCAC CTGCTGAGCAGCGATACAGTAAACCTGGGAGCTCCGCTCTTTATGTCCTG GTTCCAATGCGTGGTTTCCACAGTGATATGTTTTGTGGCAAGTCGGCTGA GCAGGAAGTACCCCTCGGTATTTACGTTTCCCGAGGGAAATCCACTGGAC ATCGACACCTTCCGCAAGATCCTGCCTCTATCTGTGCTCTATACCCTGAT GATTGGGGCCAACAACCTGTCGCTGTCCTACGTCACAGTGGCCTTCTACT ACATCGGTCGCTCCCTAACAACCGTGTTTAGTGTGGTCCTCACTTACGTG ATTCTACGCCAACGAACCAGCTTCAAGTGCCTGCTGTGTTGTGGCGCTAT TGTCGTTGGATTCTGGCTGGGTGTGGACCAAGAAAGCCTGACGGAGGTCT TCTCCTGGCGGGGAACCATCTTTGGAGTGCTTAGTTCGCTTGCTTTGGCC ATGTTTTCTATTCAGACGAAGAAATCATTGGGTTATGTCAACCAGGAGGT ATGGCTGCTTAGCTACTACAATAATCTCTACTCCACGTTGCTCTTCCTGC CCCTGATCATCATCAATGGCGAGCTGGAGAGCATTATCACGTATCCGCAC CTGTGGGCTTCTTGGTTCTGGGCCGCGATGACGCTTAGTGGCCTTTGTGG CTTTGCCATTGGATTTGTCACTGCGCTGGAAATCAAGGTCACATCCGCCC TGACGCATAATATCTCGGGAACGGCCAAGGCCTGCGCTCAAACGGTGATC GCCACTCAGTACTACCATGACGTTCGATCGGCTCTCTGGTGGACCTCCAA TGTGGTGGTCCTGGTGGCCAGCGCCGCCTACACCCGTGTCAAGCAGCTGG AGATGATGCGCCAGCACCAACAACGCAGCACCGCCACCCAGAAGGCCTGA ATGCAATTAAAAGCTGCCAAAGTAAAGTAGACTGTTTAGGACTCTAGGAG ATGTAAGTTTAAAGTATGCACAAACAATCCATCAACAAAAATACATAGGC TTCTGTTTTAACTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4129083..4129809 | 889..163 | 3605 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 4128706..4129033 | 1213..886 | 1640 | 100 | Minus |
chr3R | 27901430 | chr3R | 4129866..4130031 | 166..1 | 830 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8043894..8044620 | 889..163 | 3635 | 100 | Minus |
3R | 31820162 | 3R | 8043515..8043844 | 1215..886 | 1650 | 100 | Minus |
3R | 31820162 | 3R | 8044677..8044842 | 166..1 | 830 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4128706..4129031 | 888..1213 | 100 | <- | Minus |
chr3R | 4129085..4129808 | 164..887 | 99 | <- | Minus |
chr3R | 4129869..4130031 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfr-RA | 1..1014 | 87..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfr-RA | 1..1014 | 87..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nac-RA | 1..1014 | 87..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfr-RA | 1..1014 | 87..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nac-RA | 1..1014 | 87..1100 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfr-RA | 1..1213 | 1..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfr-RA | 1..1213 | 1..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nac-RA | 13..1225 | 1..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gfr-RA | 1..1213 | 1..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nac-RA | 13..1225 | 1..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8302686..8303011 | 888..1213 | 100 | <- | Minus |
3R | 8303065..8303788 | 164..887 | 100 | <- | Minus |
3R | 8303849..8304011 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8302686..8303011 | 888..1213 | 100 | <- | Minus |
3R | 8303065..8303788 | 164..887 | 100 | <- | Minus |
3R | 8303849..8304011 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8302686..8303011 | 888..1213 | 100 | <- | Minus |
3R | 8303065..8303788 | 164..887 | 100 | <- | Minus |
3R | 8303849..8304011 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4128408..4128733 | 888..1213 | 100 | <- | Minus |
arm_3R | 4128787..4129510 | 164..887 | 100 | <- | Minus |
arm_3R | 4129571..4129733 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8044680..8044842 | 1..163 | 100 | Minus | |
3R | 8043517..8043842 | 888..1213 | 100 | <- | Minus |
3R | 8043896..8044619 | 164..887 | 100 | <- | Minus |
Translation from 86 to 1099
> RE40567.hyp MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAP LFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSV LYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLL CCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGY VNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTL SGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSAL WWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKA*
Translation from 86 to 1099
> RE40567.pep MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAP LFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSV LYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLL CCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGY VNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTL SGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSAL WWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16675-PA | 337 | GF16675-PA | 1..337 | 1..337 | 1703 | 95.5 | Plus |
Dana\GF24308-PA | 364 | GF24308-PA | 60..303 | 25..281 | 154 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17462-PA | 337 | GG17462-PA | 1..337 | 1..337 | 1756 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18913-PA | 337 | GH18913-PA | 1..337 | 1..337 | 1608 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nac-PA | 337 | CG9620-PA | 1..337 | 1..337 | 1744 | 100 | Plus |
frc-PB | 373 | CG3874-PB | 70..320 | 25..288 | 172 | 26.3 | Plus |
frc-PA | 373 | CG3874-PA | 70..320 | 25..288 | 172 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23412-PA | 337 | GI23412-PA | 1..337 | 1..337 | 1633 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24125-PA | 338 | GL24125-PA | 1..338 | 1..337 | 1479 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21918-PA | 337 | GA21918-PA | 1..337 | 1..337 | 1658 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26356-PA | 337 | GM26356-PA | 1..337 | 1..337 | 1768 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20878-PA | 187 | GD20878-PA | 1..184 | 1..184 | 961 | 99.5 | Plus |
Dsim\GD12404-PA | 373 | GD12404-PA | 70..313 | 25..281 | 150 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10619-PA | 337 | GJ10619-PA | 1..337 | 1..337 | 1646 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11707-PA | 337 | GK11707-PA | 1..337 | 1..337 | 1647 | 90.2 | Plus |