Clone RE40567 Report

Search the DGRC for RE40567

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:405
Well:67
Vector:pFlc-1
Associated Gene/Transcriptnac-RA
Protein status:RE40567.pep: gold
Preliminary Size:1014
Sequenced Size:1229

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9620 2002-01-01 Sim4 clustering to Release 2
CG9620 2003-01-01 Sim4 clustering to Release 3
CG9620 2003-02-05 Blastp of sequenced clone
Gfr 2008-04-29 Release 5.5 accounting
Gfr 2008-08-15 Release 5.9 accounting
Gfr 2008-12-18 5.12 accounting

Clone Sequence Records

RE40567.complete Sequence

1229 bp (1229 high quality bases) assembled on 2003-02-05

GenBank Submission: BT003501

> RE40567.complete
AGACCGGGTAGCAGATACGTGTAAAAATAAACGCACAATTACTTTTGGCT
CGCACAAATTGCTCTGCAATTCCTAAAAACTCCGAAATGTACAAGAATCT
GGAGGAGCACAACCGGCTGGTTAACAAATACCTAAAGATATTCTTCGTCG
TGTCGCTCTACTGGTGCACCTCGATATTGACGGTATTCGTAAATAAGCAC
CTGCTGAGCAGCGATACAGTAAACCTGGGAGCTCCGCTCTTTATGTCCTG
GTTCCAATGCGTGGTTTCCACAGTGATATGTTTTGTGGCAAGTCGGCTGA
GCAGGAAGTACCCCTCGGTATTTACGTTTCCCGAGGGAAATCCACTGGAC
ATCGACACCTTCCGCAAGATCCTGCCTCTATCTGTGCTCTATACCCTGAT
GATTGGGGCCAACAACCTGTCGCTGTCCTACGTCACAGTGGCCTTCTACT
ACATCGGTCGCTCCCTAACAACCGTGTTTAGTGTGGTCCTCACTTACGTG
ATTCTACGCCAACGAACCAGCTTCAAGTGCCTGCTGTGTTGTGGCGCTAT
TGTCGTTGGATTCTGGCTGGGTGTGGACCAAGAAAGCCTGACGGAGGTCT
TCTCCTGGCGGGGAACCATCTTTGGAGTGCTTAGTTCGCTTGCTTTGGCC
ATGTTTTCTATTCAGACGAAGAAATCATTGGGTTATGTCAACCAGGAGGT
ATGGCTGCTTAGCTACTACAATAATCTCTACTCCACGTTGCTCTTCCTGC
CCCTGATCATCATCAATGGCGAGCTGGAGAGCATTATCACGTATCCGCAC
CTGTGGGCTTCTTGGTTCTGGGCCGCGATGACGCTTAGTGGCCTTTGTGG
CTTTGCCATTGGATTTGTCACTGCGCTGGAAATCAAGGTCACATCCGCCC
TGACGCATAATATCTCGGGAACGGCCAAGGCCTGCGCTCAAACGGTGATC
GCCACTCAGTACTACCATGACGTTCGATCGGCTCTCTGGTGGACCTCCAA
TGTGGTGGTCCTGGTGGCCAGCGCCGCCTACACCCGTGTCAAGCAGCTGG
AGATGATGCGCCAGCACCAACAACGCAGCACCGCCACCCAGAAGGCCTGA
ATGCAATTAAAAGCTGCCAAAGTAAAGTAGACTGTTTAGGACTCTAGGAG
ATGTAAGTTTAAAGTATGCACAAACAATCCATCAACAAAAATACATAGGC
TTCTGTTTTAACTAAAAAAAAAAAAAAAA

RE40567.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gfr-RA 1328 Gfr-RA 116..1328 1..1213 6065 100 Plus
mRpL1-RA 1311 mRpL1-RA 1174..1311 1215..1078 690 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4129083..4129809 889..163 3605 99.7 Minus
chr3R 27901430 chr3R 4128706..4129033 1213..886 1640 100 Minus
chr3R 27901430 chr3R 4129866..4130031 166..1 830 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8303063..8303789 889..163 3635 100 Minus
3R 32079331 3R 8302684..8303013 1215..886 1650 100 Minus
3R 32079331 3R 8303846..8304011 166..1 830 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8043894..8044620 889..163 3635 100 Minus
3R 31820162 3R 8043515..8043844 1215..886 1650 100 Minus
3R 31820162 3R 8044677..8044842 166..1 830 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:58:13 has no hits.

RE40567.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:59:09 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4128706..4129031 888..1213 100 <- Minus
chr3R 4129085..4129808 164..887 99 <- Minus
chr3R 4129869..4130031 1..163 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:21 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
Gfr-RA 1..1014 87..1100 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:25 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
Gfr-RA 1..1014 87..1100 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:47:15 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
nac-RA 1..1014 87..1100 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:31 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
Gfr-RA 1..1014 87..1100 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:55:50 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
nac-RA 1..1014 87..1100 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:07:50 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
Gfr-RA 1..1213 1..1213 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:25 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
Gfr-RA 1..1213 1..1213 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:15 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
nac-RA 13..1225 1..1213 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:31 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
Gfr-RA 1..1213 1..1213 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:55:50 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
nac-RA 13..1225 1..1213 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:09 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8302686..8303011 888..1213 100 <- Minus
3R 8303065..8303788 164..887 100 <- Minus
3R 8303849..8304011 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:09 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8302686..8303011 888..1213 100 <- Minus
3R 8303065..8303788 164..887 100 <- Minus
3R 8303849..8304011 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:09 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8302686..8303011 888..1213 100 <- Minus
3R 8303065..8303788 164..887 100 <- Minus
3R 8303849..8304011 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:15 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4128408..4128733 888..1213 100 <- Minus
arm_3R 4128787..4129510 164..887 100 <- Minus
arm_3R 4129571..4129733 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:24 Download gff for RE40567.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8044680..8044842 1..163 100   Minus
3R 8043517..8043842 888..1213 100 <- Minus
3R 8043896..8044619 164..887 100 <- Minus

RE40567.hyp Sequence

Translation from 86 to 1099

> RE40567.hyp
MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAP
LFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSV
LYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLL
CCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGY
VNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTL
SGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSAL
WWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKA*

RE40567.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
nac-PA 337 CG9620-PA 1..337 1..337 1744 100 Plus
frc-PB 373 CG3874-PB 70..320 25..288 172 26.3 Plus
frc-PA 373 CG3874-PA 70..320 25..288 172 26.3 Plus

RE40567.pep Sequence

Translation from 86 to 1099

> RE40567.pep
MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAP
LFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSV
LYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLL
CCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGY
VNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTL
SGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSAL
WWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKA*

RE40567.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16675-PA 337 GF16675-PA 1..337 1..337 1703 95.5 Plus
Dana\GF24308-PA 364 GF24308-PA 60..303 25..281 154 27.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17462-PA 337 GG17462-PA 1..337 1..337 1756 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18913-PA 337 GH18913-PA 1..337 1..337 1608 89.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
nac-PA 337 CG9620-PA 1..337 1..337 1744 100 Plus
frc-PB 373 CG3874-PB 70..320 25..288 172 26.3 Plus
frc-PA 373 CG3874-PA 70..320 25..288 172 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23412-PA 337 GI23412-PA 1..337 1..337 1633 89 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24125-PA 338 GL24125-PA 1..338 1..337 1479 84.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21918-PA 337 GA21918-PA 1..337 1..337 1658 92 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26356-PA 337 GM26356-PA 1..337 1..337 1768 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20878-PA 187 GD20878-PA 1..184 1..184 961 99.5 Plus
Dsim\GD12404-PA 373 GD12404-PA 70..313 25..281 150 26.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10619-PA 337 GJ10619-PA 1..337 1..337 1646 91.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11707-PA 337 GK11707-PA 1..337 1..337 1647 90.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24861-PA 337 GE24861-PA 1..337 1..337 1766 99.1 Plus
Dyak\GE22149-PA 371 GE22149-PA 68..311 25..281 153 27.1 Plus