RE40656.complete Sequence
829 bp (829 high quality bases) assembled on 2003-08-12
GenBank Submission: BT011093
> RE40656.complete
ATCAGTCGACGCGGCAAAGTCAAGAGTGGATTTTGTGGATTAGCAGGAAC
ACCGAATCGAAGATATACACATTACATCACCATGAAGTTCTACCTGGGAT
TGGCGGCAGTAGTAGTTGCGATGGTTTCCCTAGCGAAGCCGGGAGAAGCC
ACCTTTGGCAAGCTTAATCTTCTTCTGGGCGGAGCCACTACGTCTGGCTA
TGGATCTGGATATGGCGGCGGCTATGGTTCTGGCTACGGCTATGGATCTG
GCTATGGATCAGGATATGGCGCCGGCTATGGATACGCTCCCGAGAACGTG
GTGAAGGTGATCAAGGTATCGGTGGTGCCAGGAGGTGGAATCGGAGGAGG
ATATGGCGGAAGCTATGGTGGAGGATATGGCGGCGGTTACACTGGCGGCT
ATGGCGGTGGCTATTCCAGCGGCTTTGTGGGCGCTGCGCCTGCCATATCC
ACCTCCGCCGTGGTTACACCGGTGGTCACATCGGTGTCCACCCCGGTTGC
CACTCCTGTCCTGGCCGGTGGAGCCGGCTATGTTGGCGGATTCGGAGGCG
CTTTGGGCGGAGGATTGGGTGGCTATGGAAGCTCCTTCGGCGGTGGTGCT
GCCCTTCCCGCCTCCTACGGCTATGGCGCTGGCTATGGCGCTGGCGGCGG
CTTTGGACTGGGATTCGGTGCACCACCACCACCACTTGGCTTGGCTGGAG
GACTCTGCTAGAGAACGACGAAGCCACAACGTCAAGTGGTTATTTTTTTT
TTGATAATTTTAAACAACGATTTGTAATTAAAAATTAACGATTTGTAATA
AATTGTATAAACGAAAAAAAAAAAAAAAA
RE40656.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5070-RA | 812 | CG5070-RA | 1..812 | 1..813 | 4025 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 17092558..17093369 | 1..813 | 3895 | 98.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17203114..17203927 | 1..815 | 4025 | 99.9 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 17211212..17212025 | 1..815 | 4035 | 99.8 | Plus |
Blast to na_te.dros performed on 2019-03-16 02:03:03 has no hits.
RE40656.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:03:55 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 17092558..17093369 | 1..813 | 95 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:28 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 1..630 | 82..711 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:59 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 1..630 | 82..711 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:35 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 1..630 | 82..711 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:31 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 1..630 | 82..711 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:56:40 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 1..630 | 82..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:00 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 1..711 | 1..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:59 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 1..812 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:35 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 3..814 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:31 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 1..711 | 1..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:56:40 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5070-RA | 3..814 | 1..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:55 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17203114..17203925 | 1..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:55 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17203114..17203925 | 1..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:55 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17203114..17203925 | 1..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:35 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17097147..17097958 | 1..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:59 Download gff for
RE40656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17211212..17212023 | 1..813 | 99 | | Plus |
RE40656.hyp Sequence
Translation from 0 to 710
> RE40656.hyp
ISRRGKVKSGFCGLAGTPNRRYTHYITMKFYLGLAAVVVAMVSLAKPGEA
TFGKLNLLLGGATTSGYGSGYGGGYGSGYGYGSGYGSGYGAGYGYAPENV
VKVIKVSVVPGGGIGGGYGGSYGGGYGGGYTGGYGGGYSSGFVGAAPAIS
TSAVVTPVVTSVSTPVATPVLAGGAGYVGGFGGALGGGLGGYGSSFGGGA
ALPASYGYGAGYGAGGGFGLGFGAPPPPLGLAGGLC*
RE40656.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5070-PA | 209 | CG5070-PA | 1..209 | 28..236 | 1118 | 100 | Plus |
CG15597-PB | 149 | CG15597-PB | 1..138 | 28..199 | 304 | 44.2 | Plus |
CG14191-PA | 193 | CG14191-PA | 7..189 | 38..232 | 285 | 36.9 | Plus |
CG17108-PA | 342 | CG17108-PA | 154..307 | 60..234 | 245 | 38.3 | Plus |
TwdlT-PA | 286 | CG5812-PA | 27..127 | 68..217 | 239 | 39.7 | Plus |
CG15597-PB | 149 | CG15597-PB | 22..132 | 106..223 | 224 | 42.6 | Plus |
CG15597-PB | 149 | CG15597-PB | 55..141 | 48..136 | 220 | 51.6 | Plus |
CG17108-PA | 342 | CG17108-PA | 42..208 | 61..234 | 214 | 36.8 | Plus |
CG17108-PA | 342 | CG17108-PA | 67..246 | 44..234 | 213 | 35.1 | Plus |
CG17108-PA | 342 | CG17108-PA | 213..340 | 60..212 | 188 | 37.1 | Plus |
CG17108-PA | 342 | CG17108-PA | 15..192 | 77..235 | 175 | 32.6 | Plus |
CG14191-PA | 193 | CG14191-PA | 90..193 | 60..142 | 152 | 38.5 | Plus |
CG17108-PA | 342 | CG17108-PA | 232..332 | 47..153 | 148 | 40.3 | Plus |
RE40656.pep Sequence
Translation from 81 to 710
> RE40656.pep
MKFYLGLAAVVVAMVSLAKPGEATFGKLNLLLGGATTSGYGSGYGGGYGS
GYGYGSGYGSGYGAGYGYAPENVVKVIKVSVVPGGGIGGGYGGSYGGGYG
GGYTGGYGGGYSSGFVGAAPAISTSAVVTPVVTSVSTPVATPVLAGGAGY
VGGFGGALGGGLGGYGSSFGGGAALPASYGYGAGYGAGGGFGLGFGAPPP
PLGLAGGLC*
RE40656.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19101-PA | 207 | GG19101-PA | 1..207 | 1..209 | 232 | 87.2 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5070-PA | 209 | CG5070-PA | 1..209 | 1..209 | 1118 | 100 | Plus |
CG15597-PB | 149 | CG15597-PB | 1..138 | 1..172 | 304 | 44.2 | Plus |
CG14191-PA | 193 | CG14191-PA | 7..189 | 11..205 | 285 | 36.9 | Plus |
CG17108-PA | 342 | CG17108-PA | 154..307 | 33..207 | 245 | 38.3 | Plus |
TwdlT-PA | 286 | CG5812-PA | 27..127 | 41..190 | 239 | 39.7 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 235..373 | 41..207 | 235 | 43.2 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 235..373 | 41..207 | 235 | 43.2 | Plus |
CG15597-PB | 149 | CG15597-PB | 22..132 | 79..196 | 224 | 42.6 | Plus |
CG12523-PB | 250 | CG12523-PB | 3..163 | 10..190 | 224 | 35.8 | Plus |
CG12523-PA | 250 | CG12523-PA | 3..163 | 10..190 | 224 | 35.8 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 250..473 | 33..207 | 223 | 36.5 | Plus |
CG15597-PB | 149 | CG15597-PB | 55..141 | 21..109 | 220 | 51.6 | Plus |
CG2157-PA | 245 | CG2157-PA | 65..191 | 39..191 | 217 | 40.8 | Plus |
CG2157-PB | 247 | CG2157-PB | 65..193 | 39..191 | 217 | 40.8 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 336..500 | 20..207 | 215 | 37.8 | Plus |
CG13376-PC | 193 | CG13376-PC | 1..190 | 30..203 | 215 | 36.3 | Plus |
CG13376-PB | 200 | CG13376-PB | 8..197 | 30..203 | 215 | 36.3 | Plus |
CG13376-PD | 204 | CG13376-PD | 12..201 | 30..203 | 215 | 36.3 | Plus |
CG17108-PA | 342 | CG17108-PA | 42..208 | 34..207 | 214 | 36.8 | Plus |
CG17108-PA | 342 | CG17108-PA | 67..246 | 17..207 | 213 | 35.1 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 336..514 | 20..207 | 211 | 36.9 | Plus |
CG10598-PC | 173 | CG10598-PC | 71..167 | 26..121 | 209 | 50 | Plus |
CG10598-PA | 173 | CG10598-PA | 71..167 | 26..121 | 209 | 50 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 392..545 | 34..206 | 208 | 39.2 | Plus |
TwdlT-PA | 286 | CG5812-PA | 29..125 | 33..172 | 204 | 35.9 | Plus |
TwdlT-PA | 286 | CG5812-PA | 33..127 | 21..163 | 203 | 35.7 | Plus |
CG12523-PB | 250 | CG12523-PB | 78..235 | 38..194 | 199 | 32.7 | Plus |
CG12523-PA | 250 | CG12523-PA | 78..235 | 38..194 | 199 | 32.7 | Plus |
CG5172-PD | 172 | CG5172-PD | 22..171 | 30..172 | 199 | 42.1 | Plus |
CG5172-PD | 172 | CG5172-PD | 22..159 | 31..207 | 199 | 37.3 | Plus |
CG2157-PA | 245 | CG2157-PA | 62..167 | 44..190 | 197 | 41.6 | Plus |
CG10598-PC | 173 | CG10598-PC | 5..172 | 8..196 | 195 | 34.6 | Plus |
CG10598-PA | 173 | CG10598-PA | 5..172 | 8..196 | 195 | 34.6 | Plus |
CG2157-PA | 245 | CG2157-PA | 67..229 | 34..199 | 194 | 37.3 | Plus |
CG2157-PB | 247 | CG2157-PB | 67..231 | 34..199 | 194 | 37.4 | Plus |
CG32564-PA | 409 | CG32564-PA | 1..178 | 1..200 | 194 | 33.2 | Plus |
CG9083-PB | 317 | CG9083-PB | 121..304 | 22..198 | 193 | 30.7 | Plus |
Ipod-PC | 349 | CG2961-PC | 47..213 | 33..191 | 193 | 34.5 | Plus |
Ipod-PB | 349 | CG2961-PB | 47..213 | 33..191 | 193 | 34.5 | Plus |
Ipod-PA | 349 | CG2961-PA | 47..213 | 33..191 | 193 | 34.5 | Plus |
CG2157-PB | 247 | CG2157-PB | 62..175 | 44..199 | 190 | 37.3 | Plus |
CG14327-PB | 153 | CG14327-PB | 52..122 | 39..117 | 189 | 49.4 | Plus |
CG14327-PA | 153 | CG14327-PA | 52..122 | 39..117 | 189 | 49.4 | Plus |
CG17108-PA | 342 | CG17108-PA | 213..340 | 33..185 | 188 | 37.1 | Plus |
CG7294-PA | 127 | CG7294-PA | 1..127 | 1..152 | 187 | 35.2 | Plus |
TwdlT-PA | 286 | CG5812-PA | 26..121 | 83..207 | 185 | 38.8 | Plus |
CG14327-PB | 153 | CG14327-PB | 57..124 | 31..115 | 185 | 43.5 | Plus |
CG14327-PA | 153 | CG14327-PA | 57..124 | 31..115 | 185 | 43.5 | Plus |
CG7296-PB | 161 | CG7296-PB | 1..161 | 1..166 | 185 | 34.1 | Plus |
CG7296-PA | 161 | CG7296-PA | 1..161 | 1..166 | 185 | 34.1 | Plus |
CG13376-PC | 193 | CG13376-PC | 74..191 | 33..170 | 183 | 42 | Plus |
CG13376-PB | 200 | CG13376-PB | 81..198 | 33..170 | 183 | 42 | Plus |
CG13376-PD | 204 | CG13376-PD | 85..202 | 33..170 | 183 | 42 | Plus |
CG13050-PA | 143 | CG13050-PA | 43..143 | 47..195 | 181 | 37.7 | Plus |
CG10597-PB | 200 | CG10597-PB | 5..132 | 73..207 | 180 | 40.1 | Plus |
CG9083-PB | 317 | CG9083-PB | 72..269 | 33..197 | 178 | 30.7 | Plus |
CG17108-PA | 342 | CG17108-PA | 15..192 | 50..208 | 175 | 32.6 | Plus |
CG7294-PA | 127 | CG7294-PA | 21..125 | 39..191 | 175 | 32.7 | Plus |
CG15731-PA | 319 | CG15731-PA | 49..237 | 33..189 | 175 | 31.2 | Plus |
CG2962-PA | 376 | CG2962-PA | 3..212 | 10..194 | 175 | 32 | Plus |
CG9083-PB | 317 | CG9083-PB | 141..309 | 33..181 | 172 | 32.3 | Plus |
CG10597-PB | 200 | CG10597-PB | 11..162 | 28..198 | 172 | 33.5 | Plus |
Edg91-PB | 151 | CG7539-PB | 52..144 | 33..117 | 172 | 47.3 | Plus |
Edg91-PA | 159 | CG7539-PA | 60..152 | 33..117 | 172 | 47.3 | Plus |
CG5172-PC | 106 | CG5172-PC | 22..94 | 31..119 | 170 | 49.4 | Plus |
prc-PB | 1713 | CG5700-PB | 343..525 | 34..208 | 168 | 36.1 | Plus |
CG9083-PB | 317 | CG9083-PB | 3..265 | 8..197 | 167 | 27.3 | Plus |
HnRNP-K-PD | 315 | CG13425-PD | 7..155 | 54..207 | 166 | 37.3 | Plus |
HnRNP-K-PB | 413 | CG13425-PB | 102..250 | 54..207 | 166 | 37.3 | Plus |
HnRNP-K-PE | 493 | CG13425-PE | 185..333 | 54..207 | 166 | 37.3 | Plus |
HnRNP-K-PF | 496 | CG13425-PF | 185..333 | 54..207 | 166 | 37.3 | Plus |
HnRNP-K-PA | 496 | CG13425-PA | 185..333 | 54..207 | 166 | 37.3 | Plus |
HnRNP-K-PC | 502 | CG13425-PC | 191..339 | 54..207 | 166 | 37.3 | Plus |
Edg91-PB | 151 | CG7539-PB | 1..148 | 11..195 | 165 | 35.4 | Plus |
Edg91-PA | 159 | CG7539-PA | 9..156 | 11..195 | 165 | 35.4 | Plus |
Pex13-PA | 440 | CG4663-PA | 71..133 | 34..103 | 164 | 46.3 | Plus |
CG5172-PD | 172 | CG5172-PD | 21..121 | 47..189 | 162 | 34.7 | Plus |
CG10597-PB | 200 | CG10597-PB | 7..180 | 11..194 | 161 | 30.7 | Plus |
CG2150-PA | 188 | CG2150-PA | 30..133 | 84..189 | 161 | 40.9 | Plus |
CG14327-PB | 153 | CG14327-PB | 51..151 | 5..112 | 160 | 38.7 | Plus |
CG14327-PA | 153 | CG14327-PA | 51..151 | 5..112 | 160 | 38.7 | Plus |
CG10597-PB | 200 | CG10597-PB | 42..193 | 6..164 | 159 | 35.3 | Plus |
CG10597-PB | 200 | CG10597-PB | 59..196 | 34..192 | 159 | 31.8 | Plus |
CG32521-PI | 323 | CG32521-PI | 49..262 | 33..207 | 159 | 32.6 | Plus |
CG32521-PD | 388 | CG32521-PD | 114..327 | 33..207 | 159 | 32.6 | Plus |
CG32521-PB | 388 | CG32521-PB | 114..327 | 33..207 | 159 | 32.6 | Plus |
Pex13-PA | 440 | CG4663-PA | 72..134 | 39..112 | 158 | 49.4 | Plus |
sqd-PD | 178 | CG16901-PD | 51..169 | 29..190 | 157 | 32.9 | Plus |
CG13228-PA | 135 | CG13228-PA | 37..135 | 89..192 | 156 | 42.5 | Plus |
CG9269-PA | 146 | CG9269-PA | 46..127 | 32..115 | 156 | 51.1 | Plus |
prc-PB | 1713 | CG5700-PB | 1008..1193 | 34..198 | 155 | 34.9 | Plus |
CG34327-PA | 220 | CG34327-PA | 13..218 | 5..195 | 155 | 30.5 | Plus |
CG10598-PC | 173 | CG10598-PC | 27..119 | 86..200 | 154 | 37.2 | Plus |
CG10598-PA | 173 | CG10598-PA | 27..119 | 86..200 | 154 | 37.2 | Plus |
prc-PB | 1713 | CG5700-PB | 462..626 | 34..207 | 154 | 36.1 | Plus |
CG7294-PA | 127 | CG7294-PA | 26..123 | 86..207 | 153 | 35.5 | Plus |
CG14191-PA | 193 | CG14191-PA | 90..193 | 33..115 | 152 | 38.5 | Plus |
prc-PB | 1713 | CG5700-PB | 173..355 | 34..208 | 152 | 35.8 | Plus |
CG14324-PA | 131 | CG14324-PA | 24..125 | 90..190 | 152 | 35 | Plus |
sqd-PD | 178 | CG16901-PD | 84..163 | 21..114 | 151 | 39.2 | Plus |
prc-PB | 1713 | CG5700-PB | 394..576 | 34..208 | 150 | 33.9 | Plus |
CG2157-PA | 245 | CG2157-PA | 64..156 | 89..203 | 149 | 35.3 | Plus |
CG2150-PA | 188 | CG2150-PA | 30..188 | 33..169 | 149 | 31.4 | Plus |
CG17108-PA | 342 | CG17108-PA | 232..332 | 20..126 | 148 | 40.3 | Plus |
prc-PB | 1713 | CG5700-PB | 808..1003 | 34..208 | 148 | 32.7 | Plus |
CG7296-PB | 161 | CG7296-PB | 36..123 | 85..190 | 140 | 37.8 | Plus |
CG7296-PA | 161 | CG7296-PA | 36..123 | 85..190 | 140 | 37.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM13493-PA | 198 | GM13493-PA | 1..198 | 14..209 | 786 | 95.5 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17334-PA | 211 | GD17334-PA | 1..211 | 1..209 | 856 | 96.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17647-PA | 211 | GE17647-PA | 1..211 | 1..209 | 236 | 92.9 | Plus |