Clone RE40656 Report

Search the DGRC for RE40656

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:406
Well:56
Vector:pFlc-1
Associated Gene/TranscriptCG5070-RA
Protein status:RE40656.pep: gold
Preliminary Size:630
Sequenced Size:829

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5070 2002-01-01 Sim4 clustering to Release 2
CG5070 2003-01-01 Sim4 clustering to Release 3
CG5070 2003-08-12 Blastp of sequenced clone
CG5070 2008-04-29 Release 5.5 accounting
CG5070 2008-08-15 Release 5.9 accounting
CG5070 2008-12-18 5.12 accounting

Clone Sequence Records

RE40656.complete Sequence

829 bp (829 high quality bases) assembled on 2003-08-12

GenBank Submission: BT011093

> RE40656.complete
ATCAGTCGACGCGGCAAAGTCAAGAGTGGATTTTGTGGATTAGCAGGAAC
ACCGAATCGAAGATATACACATTACATCACCATGAAGTTCTACCTGGGAT
TGGCGGCAGTAGTAGTTGCGATGGTTTCCCTAGCGAAGCCGGGAGAAGCC
ACCTTTGGCAAGCTTAATCTTCTTCTGGGCGGAGCCACTACGTCTGGCTA
TGGATCTGGATATGGCGGCGGCTATGGTTCTGGCTACGGCTATGGATCTG
GCTATGGATCAGGATATGGCGCCGGCTATGGATACGCTCCCGAGAACGTG
GTGAAGGTGATCAAGGTATCGGTGGTGCCAGGAGGTGGAATCGGAGGAGG
ATATGGCGGAAGCTATGGTGGAGGATATGGCGGCGGTTACACTGGCGGCT
ATGGCGGTGGCTATTCCAGCGGCTTTGTGGGCGCTGCGCCTGCCATATCC
ACCTCCGCCGTGGTTACACCGGTGGTCACATCGGTGTCCACCCCGGTTGC
CACTCCTGTCCTGGCCGGTGGAGCCGGCTATGTTGGCGGATTCGGAGGCG
CTTTGGGCGGAGGATTGGGTGGCTATGGAAGCTCCTTCGGCGGTGGTGCT
GCCCTTCCCGCCTCCTACGGCTATGGCGCTGGCTATGGCGCTGGCGGCGG
CTTTGGACTGGGATTCGGTGCACCACCACCACCACTTGGCTTGGCTGGAG
GACTCTGCTAGAGAACGACGAAGCCACAACGTCAAGTGGTTATTTTTTTT
TTGATAATTTTAAACAACGATTTGTAATTAAAAATTAACGATTTGTAATA
AATTGTATAAACGAAAAAAAAAAAAAAAA

RE40656.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5070-RA 812 CG5070-RA 1..812 1..813 4025 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17092558..17093369 1..813 3895 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17203114..17203927 1..815 4025 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17211212..17212025 1..815 4035 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 02:03:03 has no hits.

RE40656.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:03:55 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17092558..17093369 1..813 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:28 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 1..630 82..711 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:59 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 1..630 82..711 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:35 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 1..630 82..711 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:31 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 1..630 82..711 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:56:40 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 1..630 82..711 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:00 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 1..711 1..711 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:59 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 1..812 1..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:35 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 3..814 1..813 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:31 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 1..711 1..711 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:56:40 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
CG5070-RA 3..814 1..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:55 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
X 17203114..17203925 1..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:55 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
X 17203114..17203925 1..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:55 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
X 17203114..17203925 1..813 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:35 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17097147..17097958 1..813 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:59 Download gff for RE40656.complete
Subject Subject Range Query Range Percent Splice Strand
X 17211212..17212023 1..813 99   Plus

RE40656.hyp Sequence

Translation from 0 to 710

> RE40656.hyp
ISRRGKVKSGFCGLAGTPNRRYTHYITMKFYLGLAAVVVAMVSLAKPGEA
TFGKLNLLLGGATTSGYGSGYGGGYGSGYGYGSGYGSGYGAGYGYAPENV
VKVIKVSVVPGGGIGGGYGGSYGGGYGGGYTGGYGGGYSSGFVGAAPAIS
TSAVVTPVVTSVSTPVATPVLAGGAGYVGGFGGALGGGLGGYGSSFGGGA
ALPASYGYGAGYGAGGGFGLGFGAPPPPLGLAGGLC*

RE40656.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5070-PA 209 CG5070-PA 1..209 28..236 1118 100 Plus
CG15597-PB 149 CG15597-PB 1..138 28..199 304 44.2 Plus
CG14191-PA 193 CG14191-PA 7..189 38..232 285 36.9 Plus
CG17108-PA 342 CG17108-PA 154..307 60..234 245 38.3 Plus
TwdlT-PA 286 CG5812-PA 27..127 68..217 239 39.7 Plus
CG15597-PB 149 CG15597-PB 22..132 106..223 224 42.6 Plus
CG15597-PB 149 CG15597-PB 55..141 48..136 220 51.6 Plus
CG17108-PA 342 CG17108-PA 42..208 61..234 214 36.8 Plus
CG17108-PA 342 CG17108-PA 67..246 44..234 213 35.1 Plus
CG17108-PA 342 CG17108-PA 213..340 60..212 188 37.1 Plus
CG17108-PA 342 CG17108-PA 15..192 77..235 175 32.6 Plus
CG14191-PA 193 CG14191-PA 90..193 60..142 152 38.5 Plus
CG17108-PA 342 CG17108-PA 232..332 47..153 148 40.3 Plus

RE40656.pep Sequence

Translation from 81 to 710

> RE40656.pep
MKFYLGLAAVVVAMVSLAKPGEATFGKLNLLLGGATTSGYGSGYGGGYGS
GYGYGSGYGSGYGAGYGYAPENVVKVIKVSVVPGGGIGGGYGGSYGGGYG
GGYTGGYGGGYSSGFVGAAPAISTSAVVTPVVTSVSTPVATPVLAGGAGY
VGGFGGALGGGLGGYGSSFGGGAALPASYGYGAGYGAGGGFGLGFGAPPP
PLGLAGGLC*

RE40656.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19101-PA 207 GG19101-PA 1..207 1..209 232 87.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5070-PA 209 CG5070-PA 1..209 1..209 1118 100 Plus
CG15597-PB 149 CG15597-PB 1..138 1..172 304 44.2 Plus
CG14191-PA 193 CG14191-PA 7..189 11..205 285 36.9 Plus
CG17108-PA 342 CG17108-PA 154..307 33..207 245 38.3 Plus
TwdlT-PA 286 CG5812-PA 27..127 41..190 239 39.7 Plus
Cpr47Ef-PD 601 CG13214-PD 235..373 41..207 235 43.2 Plus
Cpr47Ef-PC 612 CG13214-PC 235..373 41..207 235 43.2 Plus
CG15597-PB 149 CG15597-PB 22..132 79..196 224 42.6 Plus
CG12523-PB 250 CG12523-PB 3..163 10..190 224 35.8 Plus
CG12523-PA 250 CG12523-PA 3..163 10..190 224 35.8 Plus
Cpr47Ef-PD 601 CG13214-PD 250..473 33..207 223 36.5 Plus
CG15597-PB 149 CG15597-PB 55..141 21..109 220 51.6 Plus
CG2157-PA 245 CG2157-PA 65..191 39..191 217 40.8 Plus
CG2157-PB 247 CG2157-PB 65..193 39..191 217 40.8 Plus
Cpr47Ef-PC 612 CG13214-PC 336..500 20..207 215 37.8 Plus
CG13376-PC 193 CG13376-PC 1..190 30..203 215 36.3 Plus
CG13376-PB 200 CG13376-PB 8..197 30..203 215 36.3 Plus
CG13376-PD 204 CG13376-PD 12..201 30..203 215 36.3 Plus
CG17108-PA 342 CG17108-PA 42..208 34..207 214 36.8 Plus
CG17108-PA 342 CG17108-PA 67..246 17..207 213 35.1 Plus
Cpr47Ef-PD 601 CG13214-PD 336..514 20..207 211 36.9 Plus
CG10598-PC 173 CG10598-PC 71..167 26..121 209 50 Plus
CG10598-PA 173 CG10598-PA 71..167 26..121 209 50 Plus
Cpr47Ef-PD 601 CG13214-PD 392..545 34..206 208 39.2 Plus
TwdlT-PA 286 CG5812-PA 29..125 33..172 204 35.9 Plus
TwdlT-PA 286 CG5812-PA 33..127 21..163 203 35.7 Plus
CG12523-PB 250 CG12523-PB 78..235 38..194 199 32.7 Plus
CG12523-PA 250 CG12523-PA 78..235 38..194 199 32.7 Plus
CG5172-PD 172 CG5172-PD 22..171 30..172 199 42.1 Plus
CG5172-PD 172 CG5172-PD 22..159 31..207 199 37.3 Plus
CG2157-PA 245 CG2157-PA 62..167 44..190 197 41.6 Plus
CG10598-PC 173 CG10598-PC 5..172 8..196 195 34.6 Plus
CG10598-PA 173 CG10598-PA 5..172 8..196 195 34.6 Plus
CG2157-PA 245 CG2157-PA 67..229 34..199 194 37.3 Plus
CG2157-PB 247 CG2157-PB 67..231 34..199 194 37.4 Plus
CG32564-PA 409 CG32564-PA 1..178 1..200 194 33.2 Plus
CG9083-PB 317 CG9083-PB 121..304 22..198 193 30.7 Plus
Ipod-PC 349 CG2961-PC 47..213 33..191 193 34.5 Plus
Ipod-PB 349 CG2961-PB 47..213 33..191 193 34.5 Plus
Ipod-PA 349 CG2961-PA 47..213 33..191 193 34.5 Plus
CG2157-PB 247 CG2157-PB 62..175 44..199 190 37.3 Plus
CG14327-PB 153 CG14327-PB 52..122 39..117 189 49.4 Plus
CG14327-PA 153 CG14327-PA 52..122 39..117 189 49.4 Plus
CG17108-PA 342 CG17108-PA 213..340 33..185 188 37.1 Plus
CG7294-PA 127 CG7294-PA 1..127 1..152 187 35.2 Plus
TwdlT-PA 286 CG5812-PA 26..121 83..207 185 38.8 Plus
CG14327-PB 153 CG14327-PB 57..124 31..115 185 43.5 Plus
CG14327-PA 153 CG14327-PA 57..124 31..115 185 43.5 Plus
CG7296-PB 161 CG7296-PB 1..161 1..166 185 34.1 Plus
CG7296-PA 161 CG7296-PA 1..161 1..166 185 34.1 Plus
CG13376-PC 193 CG13376-PC 74..191 33..170 183 42 Plus
CG13376-PB 200 CG13376-PB 81..198 33..170 183 42 Plus
CG13376-PD 204 CG13376-PD 85..202 33..170 183 42 Plus
CG13050-PA 143 CG13050-PA 43..143 47..195 181 37.7 Plus
CG10597-PB 200 CG10597-PB 5..132 73..207 180 40.1 Plus
CG9083-PB 317 CG9083-PB 72..269 33..197 178 30.7 Plus
CG17108-PA 342 CG17108-PA 15..192 50..208 175 32.6 Plus
CG7294-PA 127 CG7294-PA 21..125 39..191 175 32.7 Plus
CG15731-PA 319 CG15731-PA 49..237 33..189 175 31.2 Plus
CG2962-PA 376 CG2962-PA 3..212 10..194 175 32 Plus
CG9083-PB 317 CG9083-PB 141..309 33..181 172 32.3 Plus
CG10597-PB 200 CG10597-PB 11..162 28..198 172 33.5 Plus
Edg91-PB 151 CG7539-PB 52..144 33..117 172 47.3 Plus
Edg91-PA 159 CG7539-PA 60..152 33..117 172 47.3 Plus
CG5172-PC 106 CG5172-PC 22..94 31..119 170 49.4 Plus
prc-PB 1713 CG5700-PB 343..525 34..208 168 36.1 Plus
CG9083-PB 317 CG9083-PB 3..265 8..197 167 27.3 Plus
HnRNP-K-PD 315 CG13425-PD 7..155 54..207 166 37.3 Plus
HnRNP-K-PB 413 CG13425-PB 102..250 54..207 166 37.3 Plus
HnRNP-K-PE 493 CG13425-PE 185..333 54..207 166 37.3 Plus
HnRNP-K-PF 496 CG13425-PF 185..333 54..207 166 37.3 Plus
HnRNP-K-PA 496 CG13425-PA 185..333 54..207 166 37.3 Plus
HnRNP-K-PC 502 CG13425-PC 191..339 54..207 166 37.3 Plus
Edg91-PB 151 CG7539-PB 1..148 11..195 165 35.4 Plus
Edg91-PA 159 CG7539-PA 9..156 11..195 165 35.4 Plus
Pex13-PA 440 CG4663-PA 71..133 34..103 164 46.3 Plus
CG5172-PD 172 CG5172-PD 21..121 47..189 162 34.7 Plus
CG10597-PB 200 CG10597-PB 7..180 11..194 161 30.7 Plus
CG2150-PA 188 CG2150-PA 30..133 84..189 161 40.9 Plus
CG14327-PB 153 CG14327-PB 51..151 5..112 160 38.7 Plus
CG14327-PA 153 CG14327-PA 51..151 5..112 160 38.7 Plus
CG10597-PB 200 CG10597-PB 42..193 6..164 159 35.3 Plus
CG10597-PB 200 CG10597-PB 59..196 34..192 159 31.8 Plus
CG32521-PI 323 CG32521-PI 49..262 33..207 159 32.6 Plus
CG32521-PD 388 CG32521-PD 114..327 33..207 159 32.6 Plus
CG32521-PB 388 CG32521-PB 114..327 33..207 159 32.6 Plus
Pex13-PA 440 CG4663-PA 72..134 39..112 158 49.4 Plus
sqd-PD 178 CG16901-PD 51..169 29..190 157 32.9 Plus
CG13228-PA 135 CG13228-PA 37..135 89..192 156 42.5 Plus
CG9269-PA 146 CG9269-PA 46..127 32..115 156 51.1 Plus
prc-PB 1713 CG5700-PB 1008..1193 34..198 155 34.9 Plus
CG34327-PA 220 CG34327-PA 13..218 5..195 155 30.5 Plus
CG10598-PC 173 CG10598-PC 27..119 86..200 154 37.2 Plus
CG10598-PA 173 CG10598-PA 27..119 86..200 154 37.2 Plus
prc-PB 1713 CG5700-PB 462..626 34..207 154 36.1 Plus
CG7294-PA 127 CG7294-PA 26..123 86..207 153 35.5 Plus
CG14191-PA 193 CG14191-PA 90..193 33..115 152 38.5 Plus
prc-PB 1713 CG5700-PB 173..355 34..208 152 35.8 Plus
CG14324-PA 131 CG14324-PA 24..125 90..190 152 35 Plus
sqd-PD 178 CG16901-PD 84..163 21..114 151 39.2 Plus
prc-PB 1713 CG5700-PB 394..576 34..208 150 33.9 Plus
CG2157-PA 245 CG2157-PA 64..156 89..203 149 35.3 Plus
CG2150-PA 188 CG2150-PA 30..188 33..169 149 31.4 Plus
CG17108-PA 342 CG17108-PA 232..332 20..126 148 40.3 Plus
prc-PB 1713 CG5700-PB 808..1003 34..208 148 32.7 Plus
CG7296-PB 161 CG7296-PB 36..123 85..190 140 37.8 Plus
CG7296-PA 161 CG7296-PA 36..123 85..190 140 37.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13493-PA 198 GM13493-PA 1..198 14..209 786 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17334-PA 211 GD17334-PA 1..211 1..209 856 96.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17647-PA 211 GE17647-PA 1..211 1..209 236 92.9 Plus