Clone RE40745 Report

Search the DGRC for RE40745

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:407
Well:45
Vector:pFlc-1
Associated Gene/TranscriptDrep-1-RA
Protein status:RE40745.pep: gold
Preliminary Size:2137
Sequenced Size:2167

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8357 2002-01-01 Sim4 clustering to Release 2
CG8357 2003-01-01 Sim4 clustering to Release 3
CG8357 2003-08-12 Blastp of sequenced clone
Rep1 2008-04-29 Release 5.5 accounting
Rep1 2008-08-15 Release 5.9 accounting
Rep1 2008-12-18 5.12 accounting

Clone Sequence Records

RE40745.complete Sequence

2167 bp (2167 high quality bases) assembled on 2003-08-12

GenBank Submission: BT010245

> RE40745.complete
GGCTCATTTCAAAACCGGTGCTCATCGCAACGAAAGCTCCGCTGCGGAGC
CGAGAAAATATTGTTAATTCCCATTTGAAGTGCAGCTTGTGGAAGGAAAT
TCCAAGTTTGTTTGTTCGGACGCCGAGTGCAAGTGCAAGAAGCAAGCGAA
AAGTAATCAAATCTATAGAAAAGTCATTTAATGTGGAGCAATTAAGCCTG
GAAATAAAGTGCATAGTGAATAAGTAATTTAGTTGGAGCAAACAAAGCCA
TGGAGACTGCAGCGAACTCGGGCGACTCCAAAAAGCCTTTCAAAGTCAAG
GACGTAACACGCAACATTAAGAAGGCTGTCTGCGCCTCCAGTCTGGAGGA
GATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAAGTGCGACCACCTGCCCA
CCATCCACCTGGACTCCGACGGCACGGAGATCGATGATGAGGAGTACTTT
CGCACCCTCGACGAGAATACGGAACTGGTGGCCGTCTTTCCCGGAGAACA
TTGGATCGATCCCACTCACTACGTGACGATAACCACTCCACATGGCAACG
AGGCAGGAACTGGAAACGGAGAGCTGAACGGAGGAGGCGAGGGCGACACC
ACCGATGCCAACAACTCGGAGTCGGCTCGCATCCGCCAGTTGGTGGGCCA
GCTGCAGAACAACCTCTGCAACGTGTCCGTGATGAACGATGCCGATCTGG
ACTCACTCTCCAACATGGATCCCAACTCGTTGGTGGACATCACGGGAAAG
GAGTTTATGGAGCAGCTCAAGGATGCGGGAAGGCCATTGTGTGCCAAGCG
GAATGCCGAGGATCGTTTAAATCTGCTGAAGCTATTGAAAGCTGGTGCCA
TTTTCTGCTCGGAACGTTATCCCGAGGATGCGGAGGCCATTGACCGGGAG
ATTGGACGGCAGTTGAACGAGGCGGAGAGTGGACAGATGAGCACCACAAC
GACGAGCAACACCCGCACCATCGAGGTGGTGCAGTGCGACAATCAAAACA
CGACGATAACAATTACGGTGGGCGAGGCCACCACCACTTGCGCCACAGCC
AGTGGAGCGATGGGATCCTCCGCTGCCGAAGCGGCTGCCAATGAGGCCAA
TGCCAATCCAAATAGAAATCCAAATGCCAACGGCGACATCTGACTGCCCA
TTTTGGGCAGTCTTAGGTAAAGTCTGCCGGCGGAAAACTAACGCAACTGG
GTGCGCCAATCAAAATCAAGAGCCAAAAGGATATACCGAAGACATCAGTC
CTGCAACATTGGGTTAACATAAATCGTATTTGTAGCATGTAATTAGGCAC
TGCGAAATCAGCAAAAACGAAACGGAGACGAAATCAAGTCATTGAAAATG
CTTCATAGTATCTAAGAGCAAATGAAAGTTAACGAACAATACACGTACTA
GATTTAAACACCGGGTCACGAGGCTCAAGAGAACAAGAGGCCCGCGCAGA
TTTGAAAAGTCTTTTAGCAATCACAGTCAGCGGAATCGTATTTAACCGCA
TATACACGAGTCACACCAAGCCGTACTAGATGAATAATAATCAAAGGTTA
GCGAAATAAGTATTATACTTGAGGTAGAATCCCACAACCAGAGCGAACCC
CAATTGGATGGAGTTGTCCCAGGAAACTGTTGATTTGCTTACCGTGTAAA
TTGTGTTACGAATAGTAGGTAGAGTGGAAACGCACATCAAATATTGTTTT
TAGACCAATGCCATTGTGAATGTCATTCGTTAAAGGCCAATTGAGACTGA
CTGAATTTATGTGTAATAGGTTTTTTCGTGGTTTGAGCGGTTCGGGAAAG
ATCGGATGGAAGCCTCCAGCGCTGCTGCCCTGTCCTCCCAGAATCCCCGT
CTTCCCGCCCCCGAATCCATAGCCAAATGAATTTAAGCGACAGCGCAAAC
ATTGTTAGCTAATTAAACAATAATGGAACACAATAACGCAAATTGCAATT
GCCCAATCAAAGTTGGTAACTGTAACTGTCTACAATTCGAATAAGCAATA
AGGGAAACCGTAAACGTAAACGAAATCTAAAACCGAATGCAAACAGTGAA
CAATTATTAAATATAGTGAAAAGCATACAGTAAATGCAAGTGAAAACCCC
GAGGCAAACTATATACACGAAACCAAGTAATAAATAAATGATTATTAAAC
CAAAAAAAAAAAAAAAA

RE40745.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-RA 2155 Drep-1-RA 4..2152 2..2150 10745 100 Plus
Drep-3.b 1760 Drep-3.b 588..704 406..522 180 76.9 Plus
Drep-3-RA 1822 Drep-3-RA 650..766 406..522 180 76.9 Plus
Drep-3.b 1760 Drep-3.b 780..844 682..746 145 81.5 Plus
Drep-3-RA 1822 Drep-3-RA 842..906 682..746 145 81.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7936026..7937395 781..2150 6775 99.6 Plus
chr2R 21145070 chr2R 7931837..7932131 2..296 1475 100 Plus
chr2R 21145070 chr2R 7935697..7935969 511..783 1335 99.3 Plus
chr2R 21145070 chr2R 7935198..7935413 295..510 1080 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12048803..12050176 781..2154 6855 99.9 Plus
2R 25286936 2R 12044616..12044910 2..296 1475 100 Plus
2R 25286936 2R 12048475..12048747 511..783 1365 100 Plus
2R 25286936 2R 12047976..12048191 295..510 1080 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12050002..12051375 781..2154 6855 99.9 Plus
2R 25260384 2R 12045815..12046109 2..296 1475 100 Plus
2R 25260384 2R 12049674..12049946 511..783 1365 100 Plus
2R 25260384 2R 12049175..12049390 295..510 1080 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:50:45 has no hits.

RE40745.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:33 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7931835..7932129 1..294 99 -> Plus
chr2R 7935198..7935413 295..510 100 -> Plus
chr2R 7935697..7935968 511..782 99 -> Plus
chr2R 7936028..7937395 783..2151 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:31 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 1..894 250..1143 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:50 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 1..894 250..1143 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:27 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RB 1..921 250..1170 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:21 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 1..894 250..1143 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:41 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RB 1..921 250..1170 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:04:47 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 1..2151 1..2151 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:50 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 1..2151 1..2151 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:27 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 3..2153 1..2150 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:21 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 1..2151 1..2151 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:41 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 3..2153 1..2150 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:33 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12044614..12044908 1..294 99 -> Plus
2R 12047976..12048191 295..510 100 -> Plus
2R 12048475..12048746 511..782 100 -> Plus
2R 12048805..12050172 783..2151 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:33 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12044614..12044908 1..294 99 -> Plus
2R 12047976..12048191 295..510 100 -> Plus
2R 12048475..12048746 511..782 100 -> Plus
2R 12048805..12050172 783..2151 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:33 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12044614..12044908 1..294 99 -> Plus
2R 12047976..12048191 295..510 100 -> Plus
2R 12048475..12048746 511..782 100 -> Plus
2R 12048805..12050172 783..2151 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:27 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7932119..7932413 1..294 99 -> Plus
arm_2R 7935481..7935696 295..510 100 -> Plus
arm_2R 7935980..7936251 511..782 100 -> Plus
arm_2R 7936310..7937677 783..2151 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:50 Download gff for RE40745.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12045813..12046107 1..294 99 -> Plus
2R 12049175..12049390 295..510 100 -> Plus
2R 12049674..12049945 511..782 100 -> Plus
2R 12050004..12051371 783..2151 99   Plus

RE40745.hyp Sequence

Translation from 249 to 1142

> RE40745.hyp
METAANSGDSKKPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLP
TIHLDSDGTEIDDEEYFRTLDENTELVAVFPGEHWIDPTHYVTITTPHGN
EAGTGNGELNGGGEGDTTDANNSESARIRQLVGQLQNNLCNVSVMNDADL
DSLSNMDPNSLVDITGKEFMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGA
IFCSERYPEDAEAIDREIGRQLNEAESGQMSTTTTSNTRTIEVVQCDNQN
TTITITVGEATTTCATASGAMGSSAAEAAANEANANPNRNPNANGDI*

RE40745.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-PA 297 CG8357-PA 1..297 1..297 1538 100 Plus
Drep-1-PB 306 CG8357-PB 1..297 1..297 1538 100 Plus
Drep-3-PA 266 CG8364-PA 116..245 9..168 382 51.9 Plus
Drep-3-PB 266 CG8364-PB 116..245 9..168 382 51.9 Plus

RE40745.pep Sequence

Translation from 249 to 1142

> RE40745.pep
METAANSGDSKKPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLP
TIHLDSDGTEIDDEEYFRTLDENTELVAVFPGEHWIDPTHYVTITTPHGN
EAGTGNGELNGGGEGDTTDANNSESARIRQLVGQLQNNLCNVSVMNDADL
DSLSNMDPNSLVDITGKEFMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGA
IFCSERYPEDAEAIDREIGRQLNEAESGQMSTTTTSNTRTIEVVQCDNQN
TTITITVGEATTTCATASGAMGSSAAEAAANEANANPNRNPNANGDI*

RE40745.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12288-PA 300 GF12288-PA 1..300 1..297 1199 85.5 Plus
Dana\GF12289-PA 260 GF12289-PA 110..239 9..168 402 52.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20241-PA 297 GG20241-PA 1..297 1..297 1554 98.3 Plus
Dere\GG20243-PA 262 GG20243-PA 112..241 9..168 404 52.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20857-PA 301 GH20857-PA 5..287 1..277 1199 82.2 Plus
Dgri\GH20858-PA 243 GH20858-PA 93..223 9..169 418 54 Plus
Dgri\GH20347-PA 534 GH20347-PA 52..134 4..85 150 38.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Drep1-PB 306 CG8357-PB 1..297 1..297 1538 100 Plus
Drep1-PA 297 CG8357-PA 1..297 1..297 1538 100 Plus
Drep3-PA 266 CG8364-PA 116..245 9..168 382 51.9 Plus
Drep3-PB 266 CG8364-PB 116..245 9..168 382 51.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20962-PA 286 GI20962-PA 9..286 6..297 1252 83.3 Plus
Dmoj\GI20964-PA 282 GI20964-PA 132..262 9..169 424 54 Plus
Dmoj\GI20016-PA 539 GI20016-PA 63..139 10..85 149 40.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17094-PA 311 GL17094-PA 5..287 1..273 1137 80.8 Plus
Dper\GL17096-PA 261 GL17096-PA 111..240 9..168 394 51.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21015-PA 310 GA21015-PA 5..286 1..273 1215 84.6 Plus
Dpse\GA21021-PA 261 GA21021-PA 111..240 9..168 403 52.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21329-PA 326 GM21329-PA 1..279 1..279 1305 92.1 Plus
Dsec\GM21330-PA 258 GM21330-PA 108..237 9..168 401 52.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10836-PA 297 GD10836-PA 1..297 1..297 1573 99.7 Plus
Dsim\GD10838-PA 258 GD10838-PA 108..237 9..168 401 52.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20683-PA 288 GJ20683-PA 5..288 3..297 1215 83.4 Plus
Dvir\GJ20685-PA 252 GJ20685-PA 102..232 9..169 423 53.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21339-PA 316 GK21339-PA 5..289 1..261 1120 80.4 Plus
Dwil\GK21340-PA 257 GK21340-PA 114..242 10..168 403 52.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12400-PA 297 GE12400-PA 1..297 1..297 1555 98.3 Plus
Dyak\GE12403-PA 270 GE12403-PA 120..249 9..168 405 52.5 Plus