BDGP Sequence Production Resources |
Search the DGRC for RE40776
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 407 |
Well: | 76 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG8116-RA |
Protein status: | RE40776.pep: gold |
Preliminary Size: | 950 |
Sequenced Size: | 1850 |
Gene | Date | Evidence |
---|---|---|
CG8116 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8116 | 2002-02-27 | Blastp of sequenced clone |
CG8116 | 2008-04-29 | Release 5.5 accounting |
CG8116 | 2008-08-15 | Release 5.9 accounting |
CG11760 | 2008-08-15 | Release 5.9 accounting |
CG8116 | 2008-12-18 | 5.12 accounting |
CG11760 | 2008-12-18 | 5.12 accounting |
1850 bp (1850 high quality bases) assembled on 2002-02-27
GenBank Submission: AY084168
> RE40776.complete AATTTCTCCGTTACTCGCCCATGGCCACATTTGTGCATGTGCGTTTGAGG TTCCTTTCCTTTTTATATAAGCCCCTCGTCTCTTGCCAACAAACCAACAA CAACAACAACCAGCCAGGCCAGCGGGCAACAACAACGCACAACAACGCGT ATAAATAAACGTGAACGCATGTACTTAATATTAGCATAGAGTTGTCGCCT GCGTGCATTTCATATACATAACATAACATCCACTTACTCCCATGACAACG GGACTTTAGACAGTAACGGTGGAGCAGCTAGAAGAAGAGGAAAGGCGAAG TAGAACGGGAACAAGAAGAAAAAGCAGTGGAAGAGCAGGTATCACCACCA CGTACCGCCCAAAGGTCCCAATGCTGGCGTAGAGAAGCCGAAACACCTGC TGCTGCCAGTGGAAAAGCGGGAGGAGCTGCTCCAAACTGCCCAGGTGACA TCCAATCATTTAGAGGCGACGCACCTGCCGCCTTGAGGAACTGGTCGCCA CGCAGGAGGACACGGATACGGCAACGGTTACGGACTCGTTTCCGCAGTAG CGGGCACCATGAACGCCAGCCTCATCTATGAGATACTTATGTATCTGAAC TCGTTCTACTTTGGCATGTACGCCGCCTTCGAAGTGGGCGTGGGCGTTCT TAAGGCGATTAATCTAAACTACGGCGAGAACGCGTTGTCCCGGGAGGCCA GCATCCTGCTCTCACTGTGCATCATCGAGACCGTGCGCATTGTCTTCGGG CGGAAGAGCAGTCTAAGCGATCGTGGCTGGCAAGCAACCGCATCCGTAAT ATTAACACTGCCCAGTCTTGCTATTGTTATCTACTTGTGTTGTTTTCAAA CCTTTGTTCTCAAACTCGAAATTATTCTGAGTGCCTTAATGATCACCCTA CAAGGTGCTGAACTAGTCTACGCCAGCATATTCATTTGTACAATGTGTCG CCCCGTCACATACACCTAGCAGTTGATAAGCCGCGTTGCCGCCGCCACGT CAACGACCAAGATCGAGATCAAGACCAAGCCAGCACTAACACTCCCACCT GGAGGAGAAGGAGTAGAAGCATCCACAGCCGAGCGACGACTACGACGAAG ACGAAACACTTTCCTCTGGCAATTTCACATCAAACGATTCGCCAAGGCCT CAAAACTAAGCCACTTAAATGCACACTAAGCCACCGCACATAAAAACAAA ACAAAAAATCTAGATCCTACTAGACCTCCTAGGAATCCGTGCCAAGACAA CCCGATAACATACCCAATGGCTGGCAGTTGAGGAGGACTTTCAACAAGGC TGGTCGGCCATACTGTCGGTCTTCATGACCGCCCCCTGCTTTGTGGGCGT CTCCTATCTACTGCTGCTCCAGACCTACCGACTGCGCCTGGAGTACTGCC TGTGCACGCTGCAGATCGCCCTTTACCTGACCGAGGTGTGGTATGCCATC GTCTTCGTTTTCTCGCTGTGTCGTCCAGTAACTTATGATTAGCCATATAG ACAGAAACATCCAACAGCCAACTAGCAGCAAATATACATGCGAAAGTTTA GCAATCTATAAGATCGAAAAAGGATAATATGCGGTGTAAGGAAATTTAAT GAATTTGAAAAGCAGTAGGCAGCTGAATTGCTCATGGCCGTGGAGAAGAG AAACCAAACAGAAAGAAAAAAAAAACAAAACAAAACACATATGTAGCATA TTAATAATTATGTATAGTAAGGTTTATGATAACATACACACACTCTTATA TACATATATTTAACGGTTTTATATACAAAAATTGTTAACATTTAAGCATC AATTGGAACCAATATAAGACAACAAGCAAAACCTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8116-RC | 1835 | CG8116-RC | 1..1835 | 1..1834 | 9135 | 99.9 | Plus |
CG8116-RB | 2829 | CG8116-RB | 339..1844 | 334..1838 | 7490 | 99.9 | Plus |
CG8116-RA | 1840 | CG8116-RA | 339..1840 | 334..1834 | 7470 | 99.9 | Plus |
CG8116-RB | 2829 | CG8116-RB | 1..335 | 1..335 | 1675 | 100 | Plus |
CG8116-RA | 1840 | CG8116-RA | 1..335 | 1..335 | 1675 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4543818..4544342 | 775..1299 | 2625 | 100 | Plus |
chr3R | 27901430 | chr3R | 4545774..4546312 | 1297..1834 | 2600 | 99.3 | Plus |
chr3R | 27901430 | chr3R | 4542882..4543312 | 346..776 | 2155 | 100 | Plus |
chr3R | 27901430 | chr3R | 4542204..4542538 | 1..335 | 1675 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 8719802..8720343 | 1297..1838 | 2710 | 100 | Plus |
3R | 32079331 | 3R | 8717848..8718372 | 775..1299 | 2625 | 100 | Plus |
3R | 32079331 | 3R | 8716899..8717342 | 334..776 | 2170 | 99.8 | Plus |
3R | 32079331 | 3R | 8716234..8716568 | 1..335 | 1675 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8460633..8461174 | 1297..1838 | 2710 | 100 | Plus |
3R | 31820162 | 3R | 8458679..8459203 | 775..1299 | 2625 | 100 | Plus |
3R | 31820162 | 3R | 8457730..8458173 | 334..776 | 2180 | 99.7 | Plus |
3R | 31820162 | 3R | 8457065..8457399 | 1..335 | 1675 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2107..2181 | 66..141 | 125 | 64.5 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 1351..1425 | 66..141 | 125 | 64.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4542204..4542482 | 1..279 | 100 | == | Plus |
chr3R | 4542882..4543311 | 346..775 | 100 | -> | Plus |
chr3R | 4543819..4544341 | 776..1298 | 100 | -> | Plus |
chr3R | 4545776..4546312 | 1299..1834 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8116-RA | 1..411 | 559..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8116-RC | 1..411 | 559..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8116-RA | 1..411 | 559..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8116-RA | 1..411 | 559..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8116-RA | 1..411 | 559..969 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11760-RA | 1..686 | 1149..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8116-RC | 1..1835 | 1..1834 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8116-RC | 1..1826 | 10..1834 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11760-RA | 1..686 | 1149..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8116-RC | 1..1826 | 10..1834 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8716234..8716568 | 1..335 | 100 | -> | Plus |
3R | 8716901..8717341 | 336..775 | 99 | -> | Plus |
3R | 8717849..8718371 | 776..1298 | 100 | -> | Plus |
3R | 8719804..8720339 | 1299..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8716234..8716568 | 1..335 | 100 | -> | Plus |
3R | 8716901..8717341 | 336..775 | 99 | -> | Plus |
3R | 8717849..8718371 | 776..1298 | 100 | -> | Plus |
3R | 8719804..8720339 | 1299..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8716234..8716568 | 1..335 | 100 | -> | Plus |
3R | 8716901..8717341 | 336..775 | 99 | -> | Plus |
3R | 8717849..8718371 | 776..1298 | 100 | -> | Plus |
3R | 8719804..8720339 | 1299..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4541956..4542290 | 1..335 | 100 | -> | Plus |
arm_3R | 4542623..4543063 | 336..775 | 99 | -> | Plus |
arm_3R | 4543571..4544093 | 776..1298 | 100 | -> | Plus |
arm_3R | 4545526..4546061 | 1299..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8457065..8457399 | 1..335 | 100 | -> | Plus |
3R | 8457732..8458172 | 336..775 | 99 | -> | Plus |
3R | 8458680..8459202 | 776..1298 | 100 | -> | Plus |
3R | 8460635..8461170 | 1299..1834 | 100 | Plus |
Translation from 558 to 968
> RE40776.hyp MNASLIYEILMYLNSFYFGMYAAFEVGVGVLKAINLNYGENALSREASIL LSLCIIETVRIVFGRKSSLSDRGWQATASVILTLPSLAIVIYLCCFQTFV LKLEIILSALMITLQGAELVYASIFICTMCRPVTYT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8116-PC | 136 | CG8116-PC | 1..136 | 1..136 | 677 | 100 | Plus |
CG8116-PB | 136 | CG8116-PB | 1..136 | 1..136 | 677 | 100 | Plus |
CG8116-PA | 136 | CG8116-PA | 1..136 | 1..136 | 677 | 100 | Plus |
CG11760-PB | 149 | CG11760-PB | 15..148 | 2..135 | 346 | 48.5 | Plus |
Translation from 558 to 968
> RE40776.pep MNASLIYEILMYLNSFYFGMYAAFEVGVGVLKAINLNYGENALSREASIL LSLCIIETVRIVFGRKSSLSDRGWQATASVILTLPSLAIVIYLCCFQTFV LKLEIILSALMITLQGAELVYASIFICTMCRPVTYT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18182-PA | 136 | GF18182-PA | 1..136 | 1..136 | 666 | 94.9 | Plus |
Dana\GF18183-PA | 149 | GF18183-PA | 17..148 | 4..135 | 301 | 46.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12263-PA | 136 | GG12263-PA | 1..136 | 1..136 | 693 | 100 | Plus |
Dere\GG12372-PA | 149 | GG12372-PA | 17..148 | 4..135 | 323 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18572-PA | 136 | GH18572-PA | 1..136 | 1..136 | 678 | 97.1 | Plus |
Dgri\GH18573-PA | 149 | GH18573-PA | 17..148 | 4..135 | 324 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TMEM216-PC | 136 | CG8116-PC | 1..136 | 1..136 | 677 | 100 | Plus |
TMEM216-PB | 136 | CG8116-PB | 1..136 | 1..136 | 677 | 100 | Plus |
TMEM216-PA | 136 | CG8116-PA | 1..136 | 1..136 | 677 | 100 | Plus |
CG11760-PB | 149 | CG11760-PB | 15..148 | 2..135 | 346 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22390-PA | 136 | GI22390-PA | 1..136 | 1..136 | 678 | 97.1 | Plus |
Dmoj\GI22391-PA | 149 | GI22391-PA | 17..148 | 4..135 | 328 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12472-PA | 136 | GL12472-PA | 1..136 | 1..136 | 678 | 97.1 | Plus |
Dper\GL12473-PA | 149 | GL12473-PA | 15..148 | 2..135 | 339 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20835-PA | 136 | GA20835-PA | 1..136 | 1..136 | 678 | 97.1 | Plus |
Dpse\GA27519-PA | 149 | GA27519-PA | 15..148 | 2..135 | 339 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23754-PA | 136 | GM23754-PA | 1..136 | 1..136 | 688 | 99.3 | Plus |
Dsec\GM23755-PA | 149 | GM23755-PA | 17..148 | 4..135 | 326 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18565-PA | 136 | GD18565-PA | 1..136 | 1..136 | 688 | 99.3 | Plus |
Dsim\GD18566-PA | 149 | GD18566-PA | 17..148 | 4..135 | 326 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22675-PA | 136 | GJ22675-PA | 1..136 | 1..136 | 678 | 97.1 | Plus |
Dvir\GJ22676-PA | 149 | GJ22676-PA | 17..148 | 4..135 | 331 | 48.5 | Plus |