BDGP Sequence Production Resources |
Search the DGRC for RE40783
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 407 |
Well: | 83 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4962-RA |
Protein status: | RE40783.pep: gold |
Preliminary Size: | 613 |
Sequenced Size: | 783 |
Gene | Date | Evidence |
---|---|---|
CG4962 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4962 | 2002-02-27 | Blastp of sequenced clone |
CG4962 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4962 | 2008-04-29 | Release 5.5 accounting |
CG4962 | 2008-08-15 | Release 5.9 accounting |
CG4962 | 2008-12-18 | 5.12 accounting |
783 bp (783 high quality bases) assembled on 2002-02-27
GenBank Submission: AY084169
> RE40783.complete AAGCATAACACATTCAGCTCTTCGGTCAAGAAGTCCAAACAACACAAAAC CAGCAAAATGTTCAAACTGATTGCCCTCATCTCTGCCCTGTGCGCCGTGG CCAATGCCGGAGTAATCTCGCCCTACAGCCATGGATATGGACTGGGATAC GGCGCCGCCTTGGCTCCGGCTTATGCCGCTCCGGCTGTGATCTCGCACGC CCCGATCATCAAGAGCTACGCCGCTCCCATTGTCGCCCACCCGGTGGCCA CCTCCTATGCCAACACCTACAAGGTGGCCACCAAGGCCATTCCAGTGGTC CATGCCGCTCCTCTGGTCCATGCCGTGCCTGCTCTGCACTCCACCTCCAC CTACCATGGATCCTATGGCGGCTACGGTAGCTACGGTCTGGGATACGCCG GCTACGGACACGGAGCCTACCTGCACTAAGGATCTGGATGTCGGAAAGGA TACCAGCCCCCCGTTGACGACCCCGATTGAAGTGAGAACATTAAGCGGAT AATTCGCATTTTGCTGCCGTCAAAGTGTTGAATTTGCATTTCGTAGTCAG AAGCGGAAATACAAATTGTGTACAAAATCCCTCAAAAACCCAGACACCCA CTTGGAGACAGAGACAACTAGAGAACTAAGGACAACTAACGGGAGGCGGC GAGAGCGAGAGAGATTGATGAAGGATCAAGTTTCGTTGATTTTGTTATTA TGGTGCAACTCCATGCATTGTGGCTTCATAACATTTTGTAAATAAACGAT AAATGACTCTTTAAACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4962-RA | 886 | CG4962-RA | 115..883 | 1..769 | 3845 | 100 | Plus |
CG4962.b | 810 | CG4962.b | 107..587 | 1..481 | 2405 | 100 | Plus |
CG4962.a | 763 | CG4962.a | 107..587 | 1..481 | 2405 | 100 | Plus |
CG4962.b | 810 | CG4962.b | 588..810 | 547..769 | 1115 | 100 | Plus |
CG4962.a | 763 | CG4962.a | 588..763 | 594..769 | 880 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 5581..5623 | 324..285 | 109 | 76.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16284432..16285129 | 70..767 | 98 | <- | Minus |
chr3L | 16285193..16285261 | 1..69 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 1..372 | 58..429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 1..372 | 58..429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 1..372 | 58..429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 1..372 | 58..429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 1..372 | 58..429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 1..767 | 1..767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 1..767 | 1..767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 8..774 | 1..767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 1..767 | 1..767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4962-RA | 8..774 | 1..767 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16295472..16295540 | 1..69 | 100 | Minus | |
3L | 16294711..16295408 | 70..767 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16295472..16295540 | 1..69 | 100 | Minus | |
3L | 16294711..16295408 | 70..767 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16295472..16295540 | 1..69 | 100 | Minus | |
3L | 16294711..16295408 | 70..767 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16287811..16288508 | 70..767 | 100 | <- | Minus |
arm_3L | 16288572..16288640 | 1..69 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16287811..16288508 | 70..767 | 100 | <- | Minus |
3L | 16288572..16288640 | 1..69 | 100 | Minus |
Translation from 0 to 428
> RE40783.hyp KHNTFSSSVKKSKQHKTSKMFKLIALISALCAVANAGVISPYSHGYGLGY GAALAPAYAAPAVISHAPIIKSYAAPIVAHPVATSYANTYKVATKAIPVV HAAPLVHAVPALHSTSTYHGSYGGYGSYGLGYAGYGHGAYLH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4962-PA | 123 | CG4962-PA | 1..123 | 20..142 | 646 | 100 | Plus |
CG13041-PA | 124 | CG13041-PA | 1..106 | 20..121 | 153 | 34.9 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..99 | 20..114 | 144 | 36.4 | Plus |
Translation from 57 to 428
> RE40783.pep MFKLIALISALCAVANAGVISPYSHGYGLGYGAALAPAYAAPAVISHAPI IKSYAAPIVAHPVATSYANTYKVATKAIPVVHAAPLVHAVPALHSTSTYH GSYGGYGSYGLGYAGYGHGAYLH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10300-PA | 129 | GF10300-PA | 1..129 | 1..123 | 521 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13472-PA | 129 | GG13472-PA | 1..129 | 1..123 | 546 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15611-PA | 149 | GH15611-PA | 1..117 | 1..98 | 244 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4962-PA | 123 | CG4962-PA | 1..123 | 1..123 | 646 | 100 | Plus |
CG13041-PA | 124 | CG13041-PA | 1..106 | 1..102 | 153 | 34.9 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..99 | 1..95 | 144 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16887-PA | 131 | GI16887-PA | 1..110 | 1..98 | 285 | 76.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18013-PA | 138 | GL18013-PA | 1..112 | 1..100 | 345 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18556-PA | 138 | GA18556-PA | 1..112 | 1..100 | 345 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24421-PA | 129 | GM24421-PA | 1..129 | 1..123 | 557 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12491-PA | 129 | GD12491-PA | 1..129 | 1..123 | 557 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12636-PA | 138 | GJ12636-PA | 1..109 | 1..98 | 348 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17645-PA | 133 | GK17645-PA | 1..107 | 1..98 | 315 | 84.1 | Plus |