BDGP Sequence Production Resources |
Search the DGRC for RE40816
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 408 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31337-RA |
Protein status: | RE40816.pep: gold |
Sequenced Size: | 846 |
Gene | Date | Evidence |
---|---|---|
CG12538 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31337 | 2002-02-27 | Blastp of sequenced clone |
CG31337 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31337 | 2008-04-29 | Release 5.5 accounting |
CG31337 | 2008-08-15 | Release 5.9 accounting |
CG31337 | 2008-12-18 | 5.12 accounting |
846 bp (846 high quality bases) assembled on 2002-02-27
GenBank Submission: AY084170
> RE40816.complete AGTTTGGGTTCCGCTATCCACACGCGGAGTGAGTTTTCGGCGCTTAAAGT GCTTAAGACCTTAAAGCGAGTTTAATGCGTGGCATATACCACGGCATATA CATACCATCGTCATCTTTGCGGGGAAAAGTCTGCGGCATAACAACTGCTT CCGAAATTGTAAATTCACAATGCGGCGCGCATCTCGATTGATTCCGTTCG GTTTCGTCATCCTGCTCCTGATTCTTCTGCTCCTCCAGCCATCGACAGAC GGCCACACACTGGGCGCCAGCTGCCAGACGCCCGAGAAGAGCGAAGGACG CTGTGTGCACTTCAGCTCCTGCCGGCTCGTCTTGCGTCACTATGCGATGT ACAAGGAGCACATGCCGCCAGCGATAATGCGATTCCTGCAGAGGGTCCGT TGCAAGCCGAAACGCGAAGGCTATCATTTGTGCTGCGAACTCAAAGATGT GATTCCCGCGAACGCCAACTCCAAGTTGAAGTAAATCAACTTCAAAGTGC CTCATGTGCGTGCGAGCGAGTGTGCGGACTTTGATCTGCTAAATCAGTTG GTAGCTTTTTGTTTGGGCCCATAACCGAAATGTTATGGCCGCGTGCGGCA TCGCCTTTAATTATAATGTGTACACGAATTATGTATTAAGTGCGCCTTTC GCCAGTCTCGCCAAGGCAACAGATGCTGGGACATAATAAAAAATAAAAAG TTTAGCCTCAATCTTGACAGCTCCTGCTCGAGTTGGTTCTTGTGTATTTA AAAGCATAAATAAATTTGAACTTGCAACACCTACTGCCTGGCGTCTGTCA GTAGTCGGGCATCGAAATAAATATTTGAAATACAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31337-RA | 875 | CG31337-RA | 34..867 | 1..834 | 4155 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 9369014..9369425 | 833..422 | 2060 | 100 | Minus |
chr3R | 27901430 | chr3R | 9370173..9370432 | 260..1 | 1285 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 9369594..9369754 | 421..261 | 790 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 13543965..13544377 | 834..422 | 2065 | 100 | Minus |
3R | 32079331 | 3R | 13545125..13545384 | 260..1 | 1285 | 99.6 | Minus |
3R | 32079331 | 3R | 13544546..13544706 | 421..261 | 805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 13284796..13285208 | 834..422 | 2065 | 100 | Minus |
3R | 31820162 | 3R | 13285956..13286215 | 260..1 | 1285 | 99.6 | Minus |
3R | 31820162 | 3R | 13285377..13285537 | 421..261 | 805 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9369014..9369425 | 422..833 | 100 | <- | Minus |
chr3R | 9369594..9369754 | 261..421 | 99 | <- | Minus |
chr3R | 9370173..9370432 | 1..260 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 1..315 | 170..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 1..315 | 170..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 1..315 | 170..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 1..315 | 170..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 1..315 | 170..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 1..827 | 1..827 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 1..833 | 1..833 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 1..833 | 1..833 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 1..827 | 1..827 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31337-RA | 17..849 | 1..833 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13543966..13544377 | 422..833 | 100 | <- | Minus |
3R | 13544546..13544706 | 261..421 | 100 | <- | Minus |
3R | 13545125..13545384 | 1..260 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13543966..13544377 | 422..833 | 100 | <- | Minus |
3R | 13544546..13544706 | 261..421 | 100 | <- | Minus |
3R | 13545125..13545384 | 1..260 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13543966..13544377 | 422..833 | 100 | <- | Minus |
3R | 13544546..13544706 | 261..421 | 100 | <- | Minus |
3R | 13545125..13545384 | 1..260 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9370847..9371106 | 1..260 | 99 | Minus | |
arm_3R | 9369688..9370099 | 422..833 | 100 | <- | Minus |
arm_3R | 9370268..9370428 | 261..421 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13285956..13286215 | 1..260 | 99 | Minus | |
3R | 13284797..13285208 | 422..833 | 100 | <- | Minus |
3R | 13285377..13285537 | 261..421 | 100 | <- | Minus |
Translation from 169 to 483
> RE40816.hyp MRRASRLIPFGFVILLLILLLLQPSTDGHTLGASCQTPEKSEGRCVHFSS CRLVLRHYAMYKEHMPPAIMRFLQRVRCKPKREGYHLCCELKDVIPANAN SKLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31337-PA | 104 | CG31337-PA | 1..104 | 1..104 | 554 | 100 | Plus |
Translation from 169 to 483
> RE40816.pep MRRASRLIPFGFVILLLILLLLQPSTDGHTLGASCQTPEKSEGRCVHFSS CRLVLRHYAMYKEHMPPAIMRFLQRVRCKPKREGYHLCCELKDVIPANAN SKLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17376-PA | 107 | GF17376-PA | 1..107 | 1..104 | 405 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17043-PA | 104 | GG17043-PA | 1..104 | 1..104 | 462 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19063-PA | 79 | GH19063-PA | 9..79 | 34..104 | 311 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31337-PA | 104 | CG31337-PA | 1..104 | 1..104 | 554 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10699-PA | 106 | GI10699-PA | 1..106 | 1..104 | 327 | 67 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23979-PA | 99 | GL23979-PA | 19..99 | 25..104 | 327 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16190-PA | 102 | GA16190-PA | 22..102 | 25..104 | 327 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25927-PA | 104 | GM25927-PA | 1..104 | 1..104 | 533 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20491-PA | 104 | GD20491-PA | 1..104 | 1..104 | 540 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23116-PA | 109 | GJ23116-PA | 39..109 | 34..104 | 330 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13340-PA | 91 | GK13340-PA | 1..45 | 60..104 | 218 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24434-PA | 105 | GE24434-PA | 1..105 | 1..104 | 464 | 92.4 | Plus |