Clone RE40923 Report

Search the DGRC for RE40923

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:409
Well:23
Vector:pFlc-1
Associated Gene/TranscriptCG32115-RA
Protein status:RE40923.pep: gold
Sequenced Size:1576

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32115 2002-10-19 Blastp of sequenced clone
CG32115 2003-01-01 Sim4 clustering to Release 3
CG32115 2008-04-29 Release 5.5 accounting
CG32115 2008-08-15 Release 5.9 accounting
CG32115 2008-12-18 5.12 accounting

Clone Sequence Records

RE40923.complete Sequence

1576 bp (1576 high quality bases) assembled on 2002-10-19

GenBank Submission: BT001640

> RE40923.complete
AATCTACCTTCAAATCGAGACCGTATCGGACGTTTCTTAGCGAACACTTT
TACTTTTATACATATATACTTTAATATACATATATATGTAGAGATATATA
TACAGTTTCCTGCCATAAAATGAAAACCCAAATAACAGACATTAATCATT
TTGCTTTCTTTCGCATACTCGACATTCTGAAGAAAAACTGTGAAACACAG
CATGGCGATGAAACTGAGGAGATCATAAAATACGCTGATATCCTTAATTT
CGCTACCGCAAGCTTTAAATTTACACGAATCGTTAGGGACTGGGATATAC
ATTTCTACACACGTTTGGCGATACATGAGTTGCATGTAGTTCCGCGGAGA
AATATAACCATAAACCTTGACGCGATGTATAAAACTCTAAATGCAGAAAC
AGAGGAAGGAAGAAAGCATTTGGTGAACATCATAACTAGTATCGTATCAA
ATCCCAGTATTCGAAGACTTAAACTGAATAATCTCGATGCATTCTTTTAC
GAGGAGCACTCGAGTTTCGCTGATGAAATTTTAAAGATATTGCAATTGAA
ACGTAACAGCAAACCAATTGAGTTAATTCTTAATATACCAGGTCGTGAAA
TACGTAACCTTCATGGCTTTCGAAATATCTCCAAGCTCATCCTAACGGCA
TCTATTGAAATTTCTGACCTTGAGAAATTTTGCCTTTATAACCCTAAATT
GAGTACCTTGGAAGTGAATCAAAGTCACTTTTCCGACCATGGAAAGCTAG
CTCAAATCGTTCCCCACTGCTCCAATTTAAAGAATTTAAAATTTATACTG
GATGATAATGCATGGGATAATGATTACGTCAGACTATCGCGTTTAAATAG
GCTACAAAAATTGATAATTCTGCTGCCTGAAAATAATGAAAATGATATGG
AAATCGACATTGAATCGCACGAAGAAGAAGAAGATATGGGCATGTACTTC
GAGGAAATTGGAGCAGTCTCAACTTATACGCGGTCCATTCCAATCTTTCA
GCTCCTTAAAGCTTTACACGAAAAGGAAAAATCTACACTAAGGGAATTGC
GTTTAGGTTTTAACATTGATGATGAAATGGTACAGCTTATTTCGAAATTA
AATGAACTACGAGGGTTGGAGTGCGGATTTTATGATCCTAAAAGCGTTAG
CCATTTTGTACAACACCCAAATCTTAAACGATTAAGCACACTCAATAAGG
CTTCAATAATTACCGATGATTATGCAGCTTTGCTAGAAAAACAATGCACT
ATCTCAAATTTAGACACAAAAATTATTTTTAATGCTAAGGGAACCCTAAG
TATATTTACAGAGAAGGTGGACATTCTTCGGTCGGGTAACTGTGAATCGT
TTTTGAAACTGAAAAACCTTAAAAAAATATTTGTTCCTGACAATATGATC
AAATATGAGAAAGCGACATTGGACCGGTTTTTAGCGCTCGGTGTGGAACT
GATAGACTATAACAGTGCAAGTTCGGGCCTTGAGTCTGTTTCTGATTCTG
GCCCAGATTATAGTTTTCTTTGGAACCATTCGGATGAAAATAAATAAATT
AAACACATACAAAAAAAAAAAAAAAA

RE40923.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32115-RA 1779 CG32115-RA 1..1561 1..1561 7775 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12902374..12903345 1560..589 4845 99.9 Minus
chr3L 24539361 chr3L 12903401..12903993 593..1 2920 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12912026..12912998 1561..589 4865 100 Minus
3L 28110227 3L 12913054..12913646 593..1 2935 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12905126..12906098 1561..589 4865 100 Minus
3L 28103327 3L 12906154..12906746 593..1 2935 99.6 Minus
Blast to na_te.dros performed 2019-03-16 19:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 7275..7348 1203..1283 118 66.7 Plus

RE40923.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:43 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12902374..12903342 592..1560 99 <- Minus
chr3L 12903403..12903993 1..591 91   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:38 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1428 120..1547 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:09:27 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1428 120..1547 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:40 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1428 120..1547 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:21 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1428 120..1547 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:00 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1428 120..1547 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:30:17 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1547 1..1547 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:09:26 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1560 1..1560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:40 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1560 1..1560 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:00:21 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1547 1..1547 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:00 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
CG32115-RA 1..1560 1..1560 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:43 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12912027..12912995 592..1560 100 <- Minus
3L 12913056..12913646 1..591 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:43 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12912027..12912995 592..1560 100 <- Minus
3L 12913056..12913646 1..591 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:43 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12912027..12912995 592..1560 100 <- Minus
3L 12913056..12913646 1..591 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:40 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12905127..12906095 592..1560 100 <- Minus
arm_3L 12906156..12906746 1..591 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:52 Download gff for RE40923.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12905127..12906095 592..1560 100 <- Minus
3L 12906156..12906746 1..591 99   Minus

RE40923.pep Sequence

Translation from 119 to 1546

> RE40923.pep
MKTQITDINHFAFFRILDILKKNCETQHGDETEEIIKYADILNFATASFK
FTRIVRDWDIHFYTRLAIHELHVVPRRNITINLDAMYKTLNAETEEGRKH
LVNIITSIVSNPSIRRLKLNNLDAFFYEEHSSFADEILKILQLKRNSKPI
ELILNIPGREIRNLHGFRNISKLILTASIEISDLEKFCLYNPKLSTLEVN
QSHFSDHGKLAQIVPHCSNLKNLKFILDDNAWDNDYVRLSRLNRLQKLII
LLPENNENDMEIDIESHEEEEDMGMYFEEIGAVSTYTRSIPIFQLLKALH
EKEKSTLRELRLGFNIDDEMVQLISKLNELRGLECGFYDPKSVSHFVQHP
NLKRLSTLNKASIITDDYAALLEKQCTISNLDTKIIFNAKGTLSIFTEKV
DILRSGNCESFLKLKNLKKIFVPDNMIKYEKATLDRFLALGVELIDYNSA
SSGLESVSDSGPDYSFLWNHSDENK*

RE40923.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10675-PA 677 GF10675-PA 2..469 3..445 701 37 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13795-PA 669 GG13795-PA 7..452 5..445 898 46.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32115-PA 475 CG32115-PA 1..475 1..475 2442 100 Plus
CG32107-PE 956 CG32107-PE 10..252 2..250 223 24 Plus
CG32107-PD 980 CG32107-PD 10..252 2..250 223 24 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24876-PA 1153 GL24876-PA 6..451 4..444 620 34.4 Plus
Dper\GL19369-PA 1003 GL19369-PA 3..346 5..381 249 23.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16693-PA 653 GA16693-PA 6..451 4..444 628 33.9 Plus
Dpse\GA25938-PA 1140 GA25938-PA 3..346 5..381 244 23.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24621-PA 49 GM24621-PA 1..49 1..49 253 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12687-PA 467 GD12687-PA 1..466 1..474 2190 89.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18003-PA 690 GE18003-PA 7..438 5..442 908 47.3 Plus

RE40923.hyp Sequence

Translation from 119 to 1546

> RE40923.hyp
MKTQITDINHFAFFRILDILKKNCETQHGDETEEIIKYADILNFATASFK
FTRIVRDWDIHFYTRLAIHELHVVPRRNITINLDAMYKTLNAETEEGRKH
LVNIITSIVSNPSIRRLKLNNLDAFFYEEHSSFADEILKILQLKRNSKPI
ELILNIPGREIRNLHGFRNISKLILTASIEISDLEKFCLYNPKLSTLEVN
QSHFSDHGKLAQIVPHCSNLKNLKFILDDNAWDNDYVRLSRLNRLQKLII
LLPENNENDMEIDIESHEEEEDMGMYFEEIGAVSTYTRSIPIFQLLKALH
EKEKSTLRELRLGFNIDDEMVQLISKLNELRGLECGFYDPKSVSHFVQHP
NLKRLSTLNKASIITDDYAALLEKQCTISNLDTKIIFNAKGTLSIFTEKV
DILRSGNCESFLKLKNLKKIFVPDNMIKYEKATLDRFLALGVELIDYNSA
SSGLESVSDSGPDYSFLWNHSDENK*

RE40923.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32115-PA 475 CG32115-PA 1..475 1..475 2442 100 Plus
CG32107-PE 956 CG32107-PE 10..252 2..250 223 24 Plus
CG32107-PD 980 CG32107-PD 10..252 2..250 223 24 Plus