Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE40923.complete Sequence
1576 bp (1576 high quality bases) assembled on 2002-10-19
GenBank Submission: BT001640
> RE40923.complete
AATCTACCTTCAAATCGAGACCGTATCGGACGTTTCTTAGCGAACACTTT
TACTTTTATACATATATACTTTAATATACATATATATGTAGAGATATATA
TACAGTTTCCTGCCATAAAATGAAAACCCAAATAACAGACATTAATCATT
TTGCTTTCTTTCGCATACTCGACATTCTGAAGAAAAACTGTGAAACACAG
CATGGCGATGAAACTGAGGAGATCATAAAATACGCTGATATCCTTAATTT
CGCTACCGCAAGCTTTAAATTTACACGAATCGTTAGGGACTGGGATATAC
ATTTCTACACACGTTTGGCGATACATGAGTTGCATGTAGTTCCGCGGAGA
AATATAACCATAAACCTTGACGCGATGTATAAAACTCTAAATGCAGAAAC
AGAGGAAGGAAGAAAGCATTTGGTGAACATCATAACTAGTATCGTATCAA
ATCCCAGTATTCGAAGACTTAAACTGAATAATCTCGATGCATTCTTTTAC
GAGGAGCACTCGAGTTTCGCTGATGAAATTTTAAAGATATTGCAATTGAA
ACGTAACAGCAAACCAATTGAGTTAATTCTTAATATACCAGGTCGTGAAA
TACGTAACCTTCATGGCTTTCGAAATATCTCCAAGCTCATCCTAACGGCA
TCTATTGAAATTTCTGACCTTGAGAAATTTTGCCTTTATAACCCTAAATT
GAGTACCTTGGAAGTGAATCAAAGTCACTTTTCCGACCATGGAAAGCTAG
CTCAAATCGTTCCCCACTGCTCCAATTTAAAGAATTTAAAATTTATACTG
GATGATAATGCATGGGATAATGATTACGTCAGACTATCGCGTTTAAATAG
GCTACAAAAATTGATAATTCTGCTGCCTGAAAATAATGAAAATGATATGG
AAATCGACATTGAATCGCACGAAGAAGAAGAAGATATGGGCATGTACTTC
GAGGAAATTGGAGCAGTCTCAACTTATACGCGGTCCATTCCAATCTTTCA
GCTCCTTAAAGCTTTACACGAAAAGGAAAAATCTACACTAAGGGAATTGC
GTTTAGGTTTTAACATTGATGATGAAATGGTACAGCTTATTTCGAAATTA
AATGAACTACGAGGGTTGGAGTGCGGATTTTATGATCCTAAAAGCGTTAG
CCATTTTGTACAACACCCAAATCTTAAACGATTAAGCACACTCAATAAGG
CTTCAATAATTACCGATGATTATGCAGCTTTGCTAGAAAAACAATGCACT
ATCTCAAATTTAGACACAAAAATTATTTTTAATGCTAAGGGAACCCTAAG
TATATTTACAGAGAAGGTGGACATTCTTCGGTCGGGTAACTGTGAATCGT
TTTTGAAACTGAAAAACCTTAAAAAAATATTTGTTCCTGACAATATGATC
AAATATGAGAAAGCGACATTGGACCGGTTTTTAGCGCTCGGTGTGGAACT
GATAGACTATAACAGTGCAAGTTCGGGCCTTGAGTCTGTTTCTGATTCTG
GCCCAGATTATAGTTTTCTTTGGAACCATTCGGATGAAAATAAATAAATT
AAACACATACAAAAAAAAAAAAAAAA
RE40923.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32115-RA | 1779 | CG32115-RA | 1..1561 | 1..1561 | 7775 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 12902374..12903345 | 1560..589 | 4845 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 12903401..12903993 | 593..1 | 2920 | 99.5 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12912026..12912998 | 1561..589 | 4865 | 100 | Minus |
3L | 28110227 | 3L | 12913054..12913646 | 593..1 | 2935 | 99.7 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 12905126..12906098 | 1561..589 | 4865 | 100 | Minus |
3L | 28103327 | 3L | 12906154..12906746 | 593..1 | 2935 | 99.6 | Minus |
Blast to na_te.dros performed 2019-03-16 19:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7275..7348 | 1203..1283 | 118 | 66.7 | Plus |
RE40923.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:43 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 12902374..12903342 | 592..1560 | 99 | <- | Minus |
chr3L | 12903403..12903993 | 1..591 | 91 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:38 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1428 | 120..1547 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:09:27 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1428 | 120..1547 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:40 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1428 | 120..1547 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:21 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1428 | 120..1547 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:00 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1428 | 120..1547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:30:17 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1547 | 1..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:09:26 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1560 | 1..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:40 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1560 | 1..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:00:21 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1547 | 1..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:00 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32115-RA | 1..1560 | 1..1560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:43 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12912027..12912995 | 592..1560 | 100 | <- | Minus |
3L | 12913056..12913646 | 1..591 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:43 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12912027..12912995 | 592..1560 | 100 | <- | Minus |
3L | 12913056..12913646 | 1..591 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:43 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12912027..12912995 | 592..1560 | 100 | <- | Minus |
3L | 12913056..12913646 | 1..591 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:40 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12905127..12906095 | 592..1560 | 100 | <- | Minus |
arm_3L | 12906156..12906746 | 1..591 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:31:52 Download gff for
RE40923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12905127..12906095 | 592..1560 | 100 | <- | Minus |
3L | 12906156..12906746 | 1..591 | 99 | | Minus |
RE40923.pep Sequence
Translation from 119 to 1546
> RE40923.pep
MKTQITDINHFAFFRILDILKKNCETQHGDETEEIIKYADILNFATASFK
FTRIVRDWDIHFYTRLAIHELHVVPRRNITINLDAMYKTLNAETEEGRKH
LVNIITSIVSNPSIRRLKLNNLDAFFYEEHSSFADEILKILQLKRNSKPI
ELILNIPGREIRNLHGFRNISKLILTASIEISDLEKFCLYNPKLSTLEVN
QSHFSDHGKLAQIVPHCSNLKNLKFILDDNAWDNDYVRLSRLNRLQKLII
LLPENNENDMEIDIESHEEEEDMGMYFEEIGAVSTYTRSIPIFQLLKALH
EKEKSTLRELRLGFNIDDEMVQLISKLNELRGLECGFYDPKSVSHFVQHP
NLKRLSTLNKASIITDDYAALLEKQCTISNLDTKIIFNAKGTLSIFTEKV
DILRSGNCESFLKLKNLKKIFVPDNMIKYEKATLDRFLALGVELIDYNSA
SSGLESVSDSGPDYSFLWNHSDENK*
RE40923.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF10675-PA | 677 | GF10675-PA | 2..469 | 3..445 | 701 | 37 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13795-PA | 669 | GG13795-PA | 7..452 | 5..445 | 898 | 46.6 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32115-PA | 475 | CG32115-PA | 1..475 | 1..475 | 2442 | 100 | Plus |
CG32107-PE | 956 | CG32107-PE | 10..252 | 2..250 | 223 | 24 | Plus |
CG32107-PD | 980 | CG32107-PD | 10..252 | 2..250 | 223 | 24 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL24876-PA | 1153 | GL24876-PA | 6..451 | 4..444 | 620 | 34.4 | Plus |
Dper\GL19369-PA | 1003 | GL19369-PA | 3..346 | 5..381 | 249 | 23.6 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA16693-PA | 653 | GA16693-PA | 6..451 | 4..444 | 628 | 33.9 | Plus |
Dpse\GA25938-PA | 1140 | GA25938-PA | 3..346 | 5..381 | 244 | 23.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24621-PA | 49 | GM24621-PA | 1..49 | 1..49 | 253 | 98 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12687-PA | 467 | GD12687-PA | 1..466 | 1..474 | 2190 | 89.7 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE18003-PA | 690 | GE18003-PA | 7..438 | 5..442 | 908 | 47.3 | Plus |
RE40923.hyp Sequence
Translation from 119 to 1546
> RE40923.hyp
MKTQITDINHFAFFRILDILKKNCETQHGDETEEIIKYADILNFATASFK
FTRIVRDWDIHFYTRLAIHELHVVPRRNITINLDAMYKTLNAETEEGRKH
LVNIITSIVSNPSIRRLKLNNLDAFFYEEHSSFADEILKILQLKRNSKPI
ELILNIPGREIRNLHGFRNISKLILTASIEISDLEKFCLYNPKLSTLEVN
QSHFSDHGKLAQIVPHCSNLKNLKFILDDNAWDNDYVRLSRLNRLQKLII
LLPENNENDMEIDIESHEEEEDMGMYFEEIGAVSTYTRSIPIFQLLKALH
EKEKSTLRELRLGFNIDDEMVQLISKLNELRGLECGFYDPKSVSHFVQHP
NLKRLSTLNKASIITDDYAALLEKQCTISNLDTKIIFNAKGTLSIFTEKV
DILRSGNCESFLKLKNLKKIFVPDNMIKYEKATLDRFLALGVELIDYNSA
SSGLESVSDSGPDYSFLWNHSDENK*
RE40923.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32115-PA | 475 | CG32115-PA | 1..475 | 1..475 | 2442 | 100 | Plus |
CG32107-PE | 956 | CG32107-PE | 10..252 | 2..250 | 223 | 24 | Plus |
CG32107-PD | 980 | CG32107-PD | 10..252 | 2..250 | 223 | 24 | Plus |