Clone RE40943 Report

Search the DGRC for RE40943

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:409
Well:43
Vector:pFlc-1
Associated Gene/TranscriptAcph-1-RB
Protein status:RE40943.pep: gold
Preliminary Size:1573
Sequenced Size:1906

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7899 2002-10-12 Blastp of sequenced clone
Acph-1 2008-04-29 Release 5.5 accounting
Acph-1 2008-08-15 Release 5.9 accounting
Acph-1 2008-12-18 5.12 accounting

Clone Sequence Records

RE40943.complete Sequence

1906 bp (1906 high quality bases) assembled on 2002-10-12

GenBank Submission: BT001641

> RE40943.complete
AGTTATACGGTCGAGGTAAGGGAACTAATACCCGTTATAGCCGTAGACCA
AACGCCGTAACCTGTATTCGCATGCTCACATATGTTTTCCCGCAGTCGCT
GTGGTTCACTTGTAACAAGTGTGGCTCGCAAAATGTGGAACCACCCAAGC
CAGCGCTGGCTCATCTTGATCTGCGTTATATGTTTGCTGTCTTTTGCGCT
GGCCAATTCGCTTCATGGCTATGCTAATGCTGAAGGTCATCCAGTGGAGA
TTTCGGCCACATTGCCAGGCCAGCTGAAGTTTGTGCATGTCATATATCGC
CACGGCGACAGAACGCCCGTGGATCCCTATCCCACGGACCCCTGGGGCGA
CAGGAAGTTCTGGCCCACCGGCTGGGGAGATTTGACCAATTTGGGCAAGC
AAGAGCACTACGACCTGGGAAAATGGCTGCGGAATCGCTATTCAAACCTC
CTACCGCCTATATACTCCAACGAGAACATCTACGTTCAGTCCACCGACGT
GGATCGCACATTGATGAGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGC
CGCAAGGGGAAGACATCTGGAACACGGACATCAACTGGCAACCCATACCC
ATTCACACCTCGCCCGAGAGGGAGGATCCCATACTGGCCGCTAAGGCACC
TTGTCCTGCCTATGACTATGAGCTGGCCAGCCTGGAATCATCGCCAGAAT
TCAAGGCCTTGACCGAAAAACACCGAAATCTGTTTGCTTATTTGAGCGAA
AAAGGCGGACGCCCCGTGAAGACCTTCATTGATGCCCAGTATTTGAATAA
CACCTTGTTCATTGAGAATCTGTACAACATGACACTGCCAAAATGGACTA
AAATGGTTTATGGGAGAGAGGAGCTCACGTATGTATCGAATTTCGCTTTC
GCCATCAGCTCTTATACGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTT
GCTAAAGGACATATTCCAGCGGTTTAAAGAGAAATCCTCCGGGAGCCTAA
AACCAGATCGTTCGATGTGGGTCTACAGTGCTCATGACACCACGGTAGCC
AGCGTTTTGAATGCGCTGAAATTATTTGAGCTGCACAGTCCTCCCTACAC
GGCGTGCATAATGATGGAGTTGCGTGTGGATGAGACCAACACCCCGTTGG
TCTCTATTTTCTACAAGAACACCACAGCTGAACCCCTGCCTCTGGACATA
CCTGGTTGTGGGCCTTCCTGTCCGCTGACCAAACTTATGAACATCTACGA
GGACGTTTTGCCCGTAGATTGGGAGCGCGAGTGCAAGCTATCCACGATGA
TGATGACTTATGAGGAAGCCAATCTTGGAACTGCGACGGGCATTCTCATT
TTAATCGTAATTGCGCTGCTGTTCGCCAGCTATGGCCTCATGATCTACTA
CCGACGTCGCAACTACAAGCTGTATTCCTCGTACTCTCAAATGGCTTAGG
AGGCTTACCCATGCCATGCAGTTGAAGGCCCTACTTAAATCTGAATTAAG
AGCCTTGCCCGCTCTCTAGTTGCCAAAGTGATTTGCCTTTCTTGGTGTTT
TCTATATTGATTTTGGAAGTCATTGGAGTCTCAGGCGACAGTTGTTGTTA
TTCGTGGTTACTACTTAGTTAAGCCGTGCATTTCACACAAAGTCAGTTTG
TATTGATTAGTTTTGTTAGTTTAAGTTTGTGCATTTGAAATTGAAAAACA
CAAGCTCGATAGCATTTAAATGGAGTAATAACTGGTTTTGTTGTTATTCA
GTGAAAGATATGGAATACAAAGACTGTGAATAGCGATCTTGAAGTTGCAT
ACATATTATACATAACATATTTATACACATATACATTTTTATGAAATTAT
CATGAATGATAAATTTATTGTATTAAAATCGCTCAAACCAAAAAAAAAAA
AAAAAA

RE40943.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RB 2026 Acph-1-RB 133..2024 1..1892 9445 99.9 Plus
Acph-1-RA 1957 Acph-1-RA 159..1957 94..1892 8980 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25814458..25815147 1080..391 3390 99.4 Minus
chr3R 27901430 chr3R 25813526..25814074 1887..1339 2730 99.8 Minus
chr3R 27901430 chr3R 25815361..25815651 291..1 1440 99.7 Minus
chr3R 27901430 chr3R 25814133..25814394 1340..1079 1280 99.2 Minus
chr3R 27901430 chr3R 25815204..25815302 390..292 495 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29992083..29992772 1080..391 3450 100 Minus
3R 32079331 3R 29991141..29991694 1892..1339 2755 99.8 Minus
3R 32079331 3R 29992986..29993276 291..1 1455 100 Minus
3R 32079331 3R 29991753..29992014 1340..1079 1310 100 Minus
3R 32079331 3R 29992829..29992927 390..292 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29732914..29733603 1080..391 3450 100 Minus
3R 31820162 3R 29731972..29732525 1892..1339 2755 99.8 Minus
3R 31820162 3R 29733817..29734107 291..1 1455 100 Minus
3R 31820162 3R 29732584..29732845 1340..1079 1310 100 Minus
3R 31820162 3R 29733660..29733758 390..292 495 100 Minus
Blast to na_te.dros performed 2019-03-16 02:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Galileo 2304 Dbuz\Galileo GALILEO 2304bp 1101..1221 1762..1643 123 61 Minus

RE40943.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:04:06 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25814134..25814392 1081..1339 99 <- Minus
chr3R 25813524..25814073 1340..1889 99 <- Minus
chr3R 25814458..25815147 391..1080 99 <- Minus
chr3R 25815204..25815302 292..390 100 <- Minus
chr3R 25815361..25815651 1..291 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:45 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1368 82..1449 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:11:32 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1368 82..1449 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:42 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1368 82..1449 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:02:22 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1368 82..1449 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:57:04 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1368 82..1449 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:33:19 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1889 1..1889 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:11:32 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1889 1..1889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:42 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1889 1..1889 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:02:23 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1889 1..1889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:57:04 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1889 1..1889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:04:06 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29991144..29991693 1340..1889 99 <- Minus
3R 29991754..29992012 1081..1339 100 <- Minus
3R 29992083..29992772 391..1080 100 <- Minus
3R 29992829..29992927 292..390 100 <- Minus
3R 29992986..29993276 1..291 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:04:06 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29991144..29991693 1340..1889 99 <- Minus
3R 29991754..29992012 1081..1339 100 <- Minus
3R 29992083..29992772 391..1080 100 <- Minus
3R 29992829..29992927 292..390 100 <- Minus
3R 29992986..29993276 1..291 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:04:06 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29991144..29991693 1340..1889 99 <- Minus
3R 29991754..29992012 1081..1339 100 <- Minus
3R 29992083..29992772 391..1080 100 <- Minus
3R 29992829..29992927 292..390 100 <- Minus
3R 29992986..29993276 1..291 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:42 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25816866..25817415 1340..1889 99 <- Minus
arm_3R 25817476..25817734 1081..1339 100 <- Minus
arm_3R 25817805..25818494 391..1080 100 <- Minus
arm_3R 25818551..25818649 292..390 100 <- Minus
arm_3R 25818708..25818998 1..291 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:34:05 Download gff for RE40943.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29731975..29732524 1340..1889 99 <- Minus
3R 29732585..29732843 1081..1339 100 <- Minus
3R 29732914..29733603 391..1080 100 <- Minus
3R 29733660..29733758 292..390 100 <- Minus
3R 29733817..29734107 1..291 100   Minus

RE40943.pep Sequence

Translation from 81 to 1448

> RE40943.pep
MFSRSRCGSLVTSVARKMWNHPSQRWLILICVICLLSFALANSLHGYANA
EGHPVEISATLPGQLKFVHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGD
LTNLGKQEHYDLGKWLRNRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSN
LAGLYEPQGEDIWNTDINWQPIPIHTSPEREDPILAAKAPCPAYDYELAS
LESSPEFKALTEKHRNLFAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNM
TLPKWTKMVYGREELTYVSNFAFAISSYTRKLARLKAGPLLKDIFQRFKE
KSSGSLKPDRSMWVYSAHDTTVASVLNALKLFELHSPPYTACIMMELRVD
ETNTPLVSIFYKNTTAEPLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERE
CKLSTMMMTYEEANLGTATGILILIVIALLFASYGLMIYYRRRNYKLYSS
YSQMA*

RE40943.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16215-PA 438 GF16215-PA 1..438 18..455 1852 78.5 Plus
Dana\GF10754-PA 423 GF10754-PA 63..404 65..402 615 37 Plus
Dana\GF10755-PA 408 GF10755-PA 38..386 49..394 608 38 Plus
Dana\GF10756-PA 304 GF10756-PA 36..297 65..325 543 39.5 Plus
Dana\GF18050-PA 398 GF18050-PA 45..373 65..385 469 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11981-PA 436 GG11981-PA 1..436 18..455 2102 90.2 Plus
Dere\GG13404-PA 391 GG13404-PA 36..370 65..396 658 38.7 Plus
Dere\GG13402-PA 422 GG13402-PA 62..403 65..402 618 36.4 Plus
Dere\GG13403-PA 410 GG13403-PA 56..388 65..394 589 37.7 Plus
Dere\GG11088-PA 395 GG11088-PA 42..387 65..402 492 32.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22183-PA 444 GH22183-PA 14..444 27..455 1542 64.3 Plus
Dgri\GH14400-PA 390 GH14400-PA 5..369 28..396 641 35.7 Plus
Dgri\GH14397-PA 419 GH14397-PA 21..403 28..402 590 33.2 Plus
Dgri\GH14399-PA 397 GH14399-PA 34..383 56..401 577 35.6 Plus
Dgri\GH16334-PA 398 GH16334-PA 44..390 64..402 500 33.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-PB 455 CG7899-PB 1..455 1..455 2436 100 Plus
Acph-1-PA 438 CG7899-PA 1..438 18..455 2353 100 Plus
CG9449-PK 391 CG9449-PK 36..370 65..396 658 38.4 Plus
CG9449-PH 404 CG9449-PH 49..383 65..396 658 38.4 Plus
CG9449-PG 404 CG9449-PG 49..383 65..396 658 38.4 Plus
CG9449-PF 404 CG9449-PF 49..383 65..396 658 38.4 Plus
CG9452-PA 422 CG9452-PA 57..403 60..402 617 36.5 Plus
CG9451-PB 410 CG9451-PB 56..388 65..394 581 37.1 Plus
CG9451-PA 410 CG9451-PA 56..388 65..394 581 37.1 Plus
CG6656-PA 395 CG6656-PA 42..387 65..402 476 32.4 Plus
CG9449-PJ 164 CG9449-PJ 36..156 65..184 327 45.5 Plus
CG9449-PE 177 CG9449-PE 49..169 65..184 327 45.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21969-PA 428 GI21969-PA 9..428 34..455 1521 66.1 Plus
Dmoj\GI13526-PA 390 GI13526-PA 5..369 35..396 635 36.1 Plus
Dmoj\GI13524-PA 407 GI13524-PA 45..391 60..402 578 34.8 Plus
Dmoj\GI13525-PA 393 GI13525-PA 41..378 65..401 562 37.7 Plus
Dmoj\GI22190-PA 398 GI22190-PA 44..390 64..402 479 30.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13492-PA 446 GL13492-PA 1..446 18..455 1670 71.1 Plus
Dper\GL20896-PA 390 GL20896-PA 35..369 65..396 627 37.5 Plus
Dper\GL20895-PA 399 GL20895-PA 44..376 65..394 622 40.4 Plus
Dper\GL23800-PA 398 GL23800-PA 45..390 65..402 465 31.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26867-PA 446 GA26867-PA 1..446 18..455 1672 71.1 Plus
Dpse\GA21794-PA 390 GA21794-PA 35..369 65..396 626 37.5 Plus
Dpse\GA21796-PA 413 GA21796-PA 58..390 65..394 619 40.1 Plus
Dpse\GA28226-PA 425 GA28226-PA 64..405 65..402 617 37.3 Plus
Dpse\GA19756-PA 398 GA19756-PA 45..390 65..402 465 31.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12199-PA 438 GM12199-PA 1..438 18..455 2321 97.9 Plus
Dsec\GM18426-PA 391 GM18426-PA 20..370 55..396 657 38.6 Plus
Dsec\GM18213-PA 422 GM18213-PA 62..403 65..402 620 37 Plus
Dsec\GM18316-PA 411 GM18316-PA 57..389 65..394 588 37.4 Plus
Dsec\GM26381-PA 395 GM26381-PA 42..387 65..402 478 32.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17508-PA 406 GD17508-PA 1..404 18..421 2146 97.8 Plus
Dsim\GD12276-PA 422 GD12276-PA 62..403 65..402 613 36.7 Plus
Dsim\GD12277-PA 411 GD12277-PA 57..389 65..394 586 37.1 Plus
Dsim\GD20904-PA 363 GD20904-PA 49..355 105..402 409 32 Plus
Dsim\GD12278-PA 168 GD12278-PA 36..161 65..189 324 44.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Acph-PA 435 GJ14328-PA 8..435 31..455 1567 66 Plus
Dvir\GJ11885-PA 390 GJ11885-PA 17..369 53..396 634 37.9 Plus
Dvir\GJ11884-PA 399 GJ11884-PA 44..384 65..401 600 38 Plus
Dvir\GJ11883-PA 409 GJ11883-PA 51..392 65..402 586 35.7 Plus
Dvir\GJ24309-PA 398 GJ24309-PA 44..390 64..402 473 32.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14084-PA 434 GK14084-PA 19..434 39..455 1628 72.1 Plus
Dwil\GK19469-PA 393 GK19469-PA 28..372 55..396 646 37.9 Plus
Dwil\GK19447-PA 420 GK19447-PA 22..400 28..402 616 34.1 Plus
Dwil\GK19458-PA 414 GK19458-PA 60..400 65..401 575 37.7 Plus
Dwil\GK14232-PA 398 GK14232-PA 45..390 65..402 456 30.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10406-PA 438 GE10406-PA 1..438 18..455 2159 91.8 Plus
Dyak\GE22499-PA 391 GE22499-PA 36..370 65..396 659 39.3 Plus
Dyak\GE22497-PA 409 GE22497-PA 49..390 65..402 613 36.4 Plus
Dyak\GE22775-PA 409 GE22775-PA 49..390 65..402 603 36.2 Plus
Dyak\GE22776-PA 410 GE22776-PA 56..388 65..394 590 37.4 Plus

RE40943.hyp Sequence

Translation from 81 to 1448

> RE40943.hyp
MFSRSRCGSLVTSVARKMWNHPSQRWLILICVICLLSFALANSLHGYANA
EGHPVEISATLPGQLKFVHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGD
LTNLGKQEHYDLGKWLRNRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSN
LAGLYEPQGEDIWNTDINWQPIPIHTSPEREDPILAAKAPCPAYDYELAS
LESSPEFKALTEKHRNLFAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNM
TLPKWTKMVYGREELTYVSNFAFAISSYTRKLARLKAGPLLKDIFQRFKE
KSSGSLKPDRSMWVYSAHDTTVASVLNALKLFELHSPPYTACIMMELRVD
ETNTPLVSIFYKNTTAEPLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERE
CKLSTMMMTYEEANLGTATGILILIVIALLFASYGLMIYYRRRNYKLYSS
YSQMA*

RE40943.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-PB 455 CG7899-PB 1..455 1..455 2436 100 Plus
Acph-1-PA 438 CG7899-PA 1..438 18..455 2353 100 Plus
CG9449-PK 391 CG9449-PK 36..370 65..396 658 38.4 Plus
CG9449-PH 404 CG9449-PH 49..383 65..396 658 38.4 Plus
CG9449-PG 404 CG9449-PG 49..383 65..396 658 38.4 Plus