BDGP Sequence Production Resources |
Search the DGRC for RE40943
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 409 |
Well: | 43 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Acph-1-RB |
Protein status: | RE40943.pep: gold |
Preliminary Size: | 1573 |
Sequenced Size: | 1906 |
Gene | Date | Evidence |
---|---|---|
CG7899 | 2002-10-12 | Blastp of sequenced clone |
Acph-1 | 2008-04-29 | Release 5.5 accounting |
Acph-1 | 2008-08-15 | Release 5.9 accounting |
Acph-1 | 2008-12-18 | 5.12 accounting |
1906 bp (1906 high quality bases) assembled on 2002-10-12
GenBank Submission: BT001641
> RE40943.complete AGTTATACGGTCGAGGTAAGGGAACTAATACCCGTTATAGCCGTAGACCA AACGCCGTAACCTGTATTCGCATGCTCACATATGTTTTCCCGCAGTCGCT GTGGTTCACTTGTAACAAGTGTGGCTCGCAAAATGTGGAACCACCCAAGC CAGCGCTGGCTCATCTTGATCTGCGTTATATGTTTGCTGTCTTTTGCGCT GGCCAATTCGCTTCATGGCTATGCTAATGCTGAAGGTCATCCAGTGGAGA TTTCGGCCACATTGCCAGGCCAGCTGAAGTTTGTGCATGTCATATATCGC CACGGCGACAGAACGCCCGTGGATCCCTATCCCACGGACCCCTGGGGCGA CAGGAAGTTCTGGCCCACCGGCTGGGGAGATTTGACCAATTTGGGCAAGC AAGAGCACTACGACCTGGGAAAATGGCTGCGGAATCGCTATTCAAACCTC CTACCGCCTATATACTCCAACGAGAACATCTACGTTCAGTCCACCGACGT GGATCGCACATTGATGAGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGC CGCAAGGGGAAGACATCTGGAACACGGACATCAACTGGCAACCCATACCC ATTCACACCTCGCCCGAGAGGGAGGATCCCATACTGGCCGCTAAGGCACC TTGTCCTGCCTATGACTATGAGCTGGCCAGCCTGGAATCATCGCCAGAAT TCAAGGCCTTGACCGAAAAACACCGAAATCTGTTTGCTTATTTGAGCGAA AAAGGCGGACGCCCCGTGAAGACCTTCATTGATGCCCAGTATTTGAATAA CACCTTGTTCATTGAGAATCTGTACAACATGACACTGCCAAAATGGACTA AAATGGTTTATGGGAGAGAGGAGCTCACGTATGTATCGAATTTCGCTTTC GCCATCAGCTCTTATACGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTT GCTAAAGGACATATTCCAGCGGTTTAAAGAGAAATCCTCCGGGAGCCTAA AACCAGATCGTTCGATGTGGGTCTACAGTGCTCATGACACCACGGTAGCC AGCGTTTTGAATGCGCTGAAATTATTTGAGCTGCACAGTCCTCCCTACAC GGCGTGCATAATGATGGAGTTGCGTGTGGATGAGACCAACACCCCGTTGG TCTCTATTTTCTACAAGAACACCACAGCTGAACCCCTGCCTCTGGACATA CCTGGTTGTGGGCCTTCCTGTCCGCTGACCAAACTTATGAACATCTACGA GGACGTTTTGCCCGTAGATTGGGAGCGCGAGTGCAAGCTATCCACGATGA TGATGACTTATGAGGAAGCCAATCTTGGAACTGCGACGGGCATTCTCATT TTAATCGTAATTGCGCTGCTGTTCGCCAGCTATGGCCTCATGATCTACTA CCGACGTCGCAACTACAAGCTGTATTCCTCGTACTCTCAAATGGCTTAGG AGGCTTACCCATGCCATGCAGTTGAAGGCCCTACTTAAATCTGAATTAAG AGCCTTGCCCGCTCTCTAGTTGCCAAAGTGATTTGCCTTTCTTGGTGTTT TCTATATTGATTTTGGAAGTCATTGGAGTCTCAGGCGACAGTTGTTGTTA TTCGTGGTTACTACTTAGTTAAGCCGTGCATTTCACACAAAGTCAGTTTG TATTGATTAGTTTTGTTAGTTTAAGTTTGTGCATTTGAAATTGAAAAACA CAAGCTCGATAGCATTTAAATGGAGTAATAACTGGTTTTGTTGTTATTCA GTGAAAGATATGGAATACAAAGACTGTGAATAGCGATCTTGAAGTTGCAT ACATATTATACATAACATATTTATACACATATACATTTTTATGAAATTAT CATGAATGATAAATTTATTGTATTAAAATCGCTCAAACCAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25814458..25815147 | 1080..391 | 3390 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 25813526..25814074 | 1887..1339 | 2730 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 25815361..25815651 | 291..1 | 1440 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 25814133..25814394 | 1340..1079 | 1280 | 99.2 | Minus |
chr3R | 27901430 | chr3R | 25815204..25815302 | 390..292 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29992083..29992772 | 1080..391 | 3450 | 100 | Minus |
3R | 32079331 | 3R | 29991141..29991694 | 1892..1339 | 2755 | 99.8 | Minus |
3R | 32079331 | 3R | 29992986..29993276 | 291..1 | 1455 | 100 | Minus |
3R | 32079331 | 3R | 29991753..29992014 | 1340..1079 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 29992829..29992927 | 390..292 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29732914..29733603 | 1080..391 | 3450 | 100 | Minus |
3R | 31820162 | 3R | 29731972..29732525 | 1892..1339 | 2755 | 99.8 | Minus |
3R | 31820162 | 3R | 29733817..29734107 | 291..1 | 1455 | 100 | Minus |
3R | 31820162 | 3R | 29732584..29732845 | 1340..1079 | 1310 | 100 | Minus |
3R | 31820162 | 3R | 29733660..29733758 | 390..292 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\Galileo | 2304 | Dbuz\Galileo GALILEO 2304bp | 1101..1221 | 1762..1643 | 123 | 61 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25814134..25814392 | 1081..1339 | 99 | <- | Minus |
chr3R | 25813524..25814073 | 1340..1889 | 99 | <- | Minus |
chr3R | 25814458..25815147 | 391..1080 | 99 | <- | Minus |
chr3R | 25815204..25815302 | 292..390 | 100 | <- | Minus |
chr3R | 25815361..25815651 | 1..291 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1368 | 82..1449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1368 | 82..1449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1368 | 82..1449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1368 | 82..1449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1368 | 82..1449 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1889 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1889 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1889 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1889 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Acph-1-RB | 1..1889 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29991144..29991693 | 1340..1889 | 99 | <- | Minus |
3R | 29991754..29992012 | 1081..1339 | 100 | <- | Minus |
3R | 29992083..29992772 | 391..1080 | 100 | <- | Minus |
3R | 29992829..29992927 | 292..390 | 100 | <- | Minus |
3R | 29992986..29993276 | 1..291 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29991144..29991693 | 1340..1889 | 99 | <- | Minus |
3R | 29991754..29992012 | 1081..1339 | 100 | <- | Minus |
3R | 29992083..29992772 | 391..1080 | 100 | <- | Minus |
3R | 29992829..29992927 | 292..390 | 100 | <- | Minus |
3R | 29992986..29993276 | 1..291 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29991144..29991693 | 1340..1889 | 99 | <- | Minus |
3R | 29991754..29992012 | 1081..1339 | 100 | <- | Minus |
3R | 29992083..29992772 | 391..1080 | 100 | <- | Minus |
3R | 29992829..29992927 | 292..390 | 100 | <- | Minus |
3R | 29992986..29993276 | 1..291 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25816866..25817415 | 1340..1889 | 99 | <- | Minus |
arm_3R | 25817476..25817734 | 1081..1339 | 100 | <- | Minus |
arm_3R | 25817805..25818494 | 391..1080 | 100 | <- | Minus |
arm_3R | 25818551..25818649 | 292..390 | 100 | <- | Minus |
arm_3R | 25818708..25818998 | 1..291 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29731975..29732524 | 1340..1889 | 99 | <- | Minus |
3R | 29732585..29732843 | 1081..1339 | 100 | <- | Minus |
3R | 29732914..29733603 | 391..1080 | 100 | <- | Minus |
3R | 29733660..29733758 | 292..390 | 100 | <- | Minus |
3R | 29733817..29734107 | 1..291 | 100 | Minus |
Translation from 81 to 1448
> RE40943.pep MFSRSRCGSLVTSVARKMWNHPSQRWLILICVICLLSFALANSLHGYANA EGHPVEISATLPGQLKFVHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGD LTNLGKQEHYDLGKWLRNRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSN LAGLYEPQGEDIWNTDINWQPIPIHTSPEREDPILAAKAPCPAYDYELAS LESSPEFKALTEKHRNLFAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNM TLPKWTKMVYGREELTYVSNFAFAISSYTRKLARLKAGPLLKDIFQRFKE KSSGSLKPDRSMWVYSAHDTTVASVLNALKLFELHSPPYTACIMMELRVD ETNTPLVSIFYKNTTAEPLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERE CKLSTMMMTYEEANLGTATGILILIVIALLFASYGLMIYYRRRNYKLYSS YSQMA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16215-PA | 438 | GF16215-PA | 1..438 | 18..455 | 1852 | 78.5 | Plus |
Dana\GF10754-PA | 423 | GF10754-PA | 63..404 | 65..402 | 615 | 37 | Plus |
Dana\GF10755-PA | 408 | GF10755-PA | 38..386 | 49..394 | 608 | 38 | Plus |
Dana\GF10756-PA | 304 | GF10756-PA | 36..297 | 65..325 | 543 | 39.5 | Plus |
Dana\GF18050-PA | 398 | GF18050-PA | 45..373 | 65..385 | 469 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11981-PA | 436 | GG11981-PA | 1..436 | 18..455 | 2102 | 90.2 | Plus |
Dere\GG13404-PA | 391 | GG13404-PA | 36..370 | 65..396 | 658 | 38.7 | Plus |
Dere\GG13402-PA | 422 | GG13402-PA | 62..403 | 65..402 | 618 | 36.4 | Plus |
Dere\GG13403-PA | 410 | GG13403-PA | 56..388 | 65..394 | 589 | 37.7 | Plus |
Dere\GG11088-PA | 395 | GG11088-PA | 42..387 | 65..402 | 492 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22183-PA | 444 | GH22183-PA | 14..444 | 27..455 | 1542 | 64.3 | Plus |
Dgri\GH14400-PA | 390 | GH14400-PA | 5..369 | 28..396 | 641 | 35.7 | Plus |
Dgri\GH14397-PA | 419 | GH14397-PA | 21..403 | 28..402 | 590 | 33.2 | Plus |
Dgri\GH14399-PA | 397 | GH14399-PA | 34..383 | 56..401 | 577 | 35.6 | Plus |
Dgri\GH16334-PA | 398 | GH16334-PA | 44..390 | 64..402 | 500 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Acph-1-PB | 455 | CG7899-PB | 1..455 | 1..455 | 2436 | 100 | Plus |
Acph-1-PA | 438 | CG7899-PA | 1..438 | 18..455 | 2353 | 100 | Plus |
CG9449-PK | 391 | CG9449-PK | 36..370 | 65..396 | 658 | 38.4 | Plus |
CG9449-PH | 404 | CG9449-PH | 49..383 | 65..396 | 658 | 38.4 | Plus |
CG9449-PG | 404 | CG9449-PG | 49..383 | 65..396 | 658 | 38.4 | Plus |
CG9449-PF | 404 | CG9449-PF | 49..383 | 65..396 | 658 | 38.4 | Plus |
CG9452-PA | 422 | CG9452-PA | 57..403 | 60..402 | 617 | 36.5 | Plus |
CG9451-PB | 410 | CG9451-PB | 56..388 | 65..394 | 581 | 37.1 | Plus |
CG9451-PA | 410 | CG9451-PA | 56..388 | 65..394 | 581 | 37.1 | Plus |
CG6656-PA | 395 | CG6656-PA | 42..387 | 65..402 | 476 | 32.4 | Plus |
CG9449-PJ | 164 | CG9449-PJ | 36..156 | 65..184 | 327 | 45.5 | Plus |
CG9449-PE | 177 | CG9449-PE | 49..169 | 65..184 | 327 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21969-PA | 428 | GI21969-PA | 9..428 | 34..455 | 1521 | 66.1 | Plus |
Dmoj\GI13526-PA | 390 | GI13526-PA | 5..369 | 35..396 | 635 | 36.1 | Plus |
Dmoj\GI13524-PA | 407 | GI13524-PA | 45..391 | 60..402 | 578 | 34.8 | Plus |
Dmoj\GI13525-PA | 393 | GI13525-PA | 41..378 | 65..401 | 562 | 37.7 | Plus |
Dmoj\GI22190-PA | 398 | GI22190-PA | 44..390 | 64..402 | 479 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13492-PA | 446 | GL13492-PA | 1..446 | 18..455 | 1670 | 71.1 | Plus |
Dper\GL20896-PA | 390 | GL20896-PA | 35..369 | 65..396 | 627 | 37.5 | Plus |
Dper\GL20895-PA | 399 | GL20895-PA | 44..376 | 65..394 | 622 | 40.4 | Plus |
Dper\GL23800-PA | 398 | GL23800-PA | 45..390 | 65..402 | 465 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26867-PA | 446 | GA26867-PA | 1..446 | 18..455 | 1672 | 71.1 | Plus |
Dpse\GA21794-PA | 390 | GA21794-PA | 35..369 | 65..396 | 626 | 37.5 | Plus |
Dpse\GA21796-PA | 413 | GA21796-PA | 58..390 | 65..394 | 619 | 40.1 | Plus |
Dpse\GA28226-PA | 425 | GA28226-PA | 64..405 | 65..402 | 617 | 37.3 | Plus |
Dpse\GA19756-PA | 398 | GA19756-PA | 45..390 | 65..402 | 465 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12199-PA | 438 | GM12199-PA | 1..438 | 18..455 | 2321 | 97.9 | Plus |
Dsec\GM18426-PA | 391 | GM18426-PA | 20..370 | 55..396 | 657 | 38.6 | Plus |
Dsec\GM18213-PA | 422 | GM18213-PA | 62..403 | 65..402 | 620 | 37 | Plus |
Dsec\GM18316-PA | 411 | GM18316-PA | 57..389 | 65..394 | 588 | 37.4 | Plus |
Dsec\GM26381-PA | 395 | GM26381-PA | 42..387 | 65..402 | 478 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17508-PA | 406 | GD17508-PA | 1..404 | 18..421 | 2146 | 97.8 | Plus |
Dsim\GD12276-PA | 422 | GD12276-PA | 62..403 | 65..402 | 613 | 36.7 | Plus |
Dsim\GD12277-PA | 411 | GD12277-PA | 57..389 | 65..394 | 586 | 37.1 | Plus |
Dsim\GD20904-PA | 363 | GD20904-PA | 49..355 | 105..402 | 409 | 32 | Plus |
Dsim\GD12278-PA | 168 | GD12278-PA | 36..161 | 65..189 | 324 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Acph-PA | 435 | GJ14328-PA | 8..435 | 31..455 | 1567 | 66 | Plus |
Dvir\GJ11885-PA | 390 | GJ11885-PA | 17..369 | 53..396 | 634 | 37.9 | Plus |
Dvir\GJ11884-PA | 399 | GJ11884-PA | 44..384 | 65..401 | 600 | 38 | Plus |
Dvir\GJ11883-PA | 409 | GJ11883-PA | 51..392 | 65..402 | 586 | 35.7 | Plus |
Dvir\GJ24309-PA | 398 | GJ24309-PA | 44..390 | 64..402 | 473 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14084-PA | 434 | GK14084-PA | 19..434 | 39..455 | 1628 | 72.1 | Plus |
Dwil\GK19469-PA | 393 | GK19469-PA | 28..372 | 55..396 | 646 | 37.9 | Plus |
Dwil\GK19447-PA | 420 | GK19447-PA | 22..400 | 28..402 | 616 | 34.1 | Plus |
Dwil\GK19458-PA | 414 | GK19458-PA | 60..400 | 65..401 | 575 | 37.7 | Plus |
Dwil\GK14232-PA | 398 | GK14232-PA | 45..390 | 65..402 | 456 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10406-PA | 438 | GE10406-PA | 1..438 | 18..455 | 2159 | 91.8 | Plus |
Dyak\GE22499-PA | 391 | GE22499-PA | 36..370 | 65..396 | 659 | 39.3 | Plus |
Dyak\GE22497-PA | 409 | GE22497-PA | 49..390 | 65..402 | 613 | 36.4 | Plus |
Dyak\GE22775-PA | 409 | GE22775-PA | 49..390 | 65..402 | 603 | 36.2 | Plus |
Dyak\GE22776-PA | 410 | GE22776-PA | 56..388 | 65..394 | 590 | 37.4 | Plus |
Translation from 81 to 1448
> RE40943.hyp MFSRSRCGSLVTSVARKMWNHPSQRWLILICVICLLSFALANSLHGYANA EGHPVEISATLPGQLKFVHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGD LTNLGKQEHYDLGKWLRNRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSN LAGLYEPQGEDIWNTDINWQPIPIHTSPEREDPILAAKAPCPAYDYELAS LESSPEFKALTEKHRNLFAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNM TLPKWTKMVYGREELTYVSNFAFAISSYTRKLARLKAGPLLKDIFQRFKE KSSGSLKPDRSMWVYSAHDTTVASVLNALKLFELHSPPYTACIMMELRVD ETNTPLVSIFYKNTTAEPLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERE CKLSTMMMTYEEANLGTATGILILIVIALLFASYGLMIYYRRRNYKLYSS YSQMA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Acph-1-PB | 455 | CG7899-PB | 1..455 | 1..455 | 2436 | 100 | Plus |
Acph-1-PA | 438 | CG7899-PA | 1..438 | 18..455 | 2353 | 100 | Plus |
CG9449-PK | 391 | CG9449-PK | 36..370 | 65..396 | 658 | 38.4 | Plus |
CG9449-PH | 404 | CG9449-PH | 49..383 | 65..396 | 658 | 38.4 | Plus |
CG9449-PG | 404 | CG9449-PG | 49..383 | 65..396 | 658 | 38.4 | Plus |