Clone RE41041 Report

Search the DGRC for RE41041

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:410
Well:41
Vector:pFlc-1
Associated Gene/TranscriptCG17780-RA
Protein status:RE41041.pep: gold
Preliminary Size:1008
Sequenced Size:1301

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17780 2002-01-01 Sim4 clustering to Release 2
CG17780 2002-02-22 Blastp of sequenced clone
CG17780 2003-01-01 Sim4 clustering to Release 3
CG17780 2008-04-29 Release 5.5 accounting
CG17780 2008-08-15 Release 5.9 accounting
CG17781 2008-08-15 Release 5.9 accounting
CG17780 2008-12-18 5.12 accounting
CG17781 2008-12-18 5.12 accounting

Clone Sequence Records

RE41041.complete Sequence

1301 bp (1301 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089626

> RE41041.complete
AGTAGCCCAGGGGAACTGGAACTGGACACAAGACCCAGACCCACGACGAA
CAATGTGAGCGAGGCAATTAAGCCAGGAAAAACGTCAGAAATTGAAGTAG
TTTCAGGGCGAAAATCCCTAGCAGTTGAAAGTATTAATTAGTGAACATTT
GGAAATTCAGCAACATGACTCACCTGTCAGCGTTGGCATTGCTGATGCTG
CACTTGCTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACTCA
ACCCCAACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACATT
TCGATAGCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCGAC
TTTGATTCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAGCG
TTATCTTCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGGCA
AGAACAATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCTTC
CGTGCCAATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAATGC
CGTCTTTTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGACTG
CTCTGGATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGTTC
TGCACTGCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATGCT
TTTCAAAATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCGGC
ATATGCCGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCCAT
TGTCCATTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTTAGCA
CTAAGCAATTGGAAAAGAGAACAGATTGGCCAAATAAATATGAATAGATT
TATAGAGATAATTTAAAAAATAAGTATGTTGCACTTGATGTTAAACTGAC
GACCCTTTTACGAATATAAATGTATTTTTCGAAACAGAAAACCTTCACTG
AACATCTGGCAAATGACGGAACTGTAGATTGAACTGGTTTGTTTTTTTGA
GCTACATAAAATAAACAAGACACAGATTGAATTGCACATCAAAACAAATA
AATAGATCCAGAAAACTGACGGACTGATTGCCTAAAATAATAATACTGAT
AGTAATAAAAGCACTTCAAAGTGATTGAAGCCTGGGGTGATTAAATATTG
AAGCTCGTACCATGGCACAATATACCACAATACGATTGTTAATTCAGCGC
GTTTTTAATAAAAATTTAAAACTTCAAAAAAAAAGAAAAAAAAAAAAAAA
A

RE41041.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-RA 1282 CG17780-RA 1..1276 1..1276 6380 100 Plus
CG17780-RB 1742 CG17780-RB 58..784 1..727 3635 100 Plus
CG17781-RB 2097 CG17781-RB 1..710 19..728 3550 100 Plus
CG17780-RB 1742 CG17780-RB 1139..1687 728..1276 2745 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20206259..20206808 1276..727 2750 100 Minus
chr3R 27901430 chr3R 20207948..20208388 441..1 2175 99.5 Minus
chr3R 27901430 chr3R 20207702..20207878 610..434 885 100 Minus
chr3R 27901430 chr3R 20207487..20207604 727..610 590 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24382919..24383468 1276..727 2750 100 Minus
3R 32079331 3R 24384608..24385048 441..1 2175 99.5 Minus
3R 32079331 3R 24384362..24384538 610..434 885 100 Minus
3R 32079331 3R 24384147..24384264 727..610 590 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24123750..24124299 1276..727 2750 100 Minus
3R 31820162 3R 24125439..24125879 441..1 2175 99.5 Minus
3R 31820162 3R 24125193..24125369 610..434 885 100 Minus
3R 31820162 3R 24124978..24125095 727..610 590 100 Minus
Blast to na_te.dros performed 2019-03-16 19:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2388 219..182 118 78.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6856..6893 219..182 118 78.9 Minus

RE41041.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:53:03 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20206253..20206807 728..1282 99 <- Minus
chr3R 20207487..20207603 611..727 100 <- Minus
chr3R 20207702..20207877 435..610 100 <- Minus
chr3R 20207955..20208388 1..434 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:48 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..684 165..848 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:43 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..684 165..848 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:50 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..684 165..848 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:27 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..684 165..848 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:19 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..684 165..848 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:56 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..1282 1..1282 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:43 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..1282 1..1282 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:50 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 5..1279 1..1275 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:29 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..1282 1..1282 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:19 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 5..1279 1..1275 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:03 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24382913..24383467 728..1282 99 <- Minus
3R 24384147..24384263 611..727 100 <- Minus
3R 24384362..24384537 435..610 100 <- Minus
3R 24384615..24385048 1..434 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:03 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24382913..24383467 728..1282 99 <- Minus
3R 24384147..24384263 611..727 100 <- Minus
3R 24384362..24384537 435..610 100 <- Minus
3R 24384615..24385048 1..434 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:03 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24382913..24383467 728..1282 99 <- Minus
3R 24384147..24384263 611..727 100 <- Minus
3R 24384362..24384537 435..610 100 <- Minus
3R 24384615..24385048 1..434 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:50 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20210084..20210259 435..610 100 <- Minus
arm_3R 20208635..20209189 728..1282 99 <- Minus
arm_3R 20209869..20209985 611..727 100 <- Minus
arm_3R 20210337..20210770 1..434 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:32 Download gff for RE41041.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24123744..24124298 728..1282 99 <- Minus
3R 24124978..24125094 611..727 100 <- Minus
3R 24125193..24125368 435..610 100 <- Minus
3R 24125446..24125879 1..434 100   Minus

RE41041.pep Sequence

Translation from 164 to 847

> RE41041.pep
MTHLSALALLMLHLLLVVPIPASNPPVTQPQPVDNFEGLSPLSKHFDSHM
VSPSTSNIPSSDFDSASGNSTRILRRGKRYLQFSKGSRMSWRTNGKNNLW
TINTLYAYGYGFRANYPFPSIEEQKKDNAVFFRLFKRDLFSKLETALDGH
GFDGRACMLKSFCTAINDVDNPKQKSGMLFKMLKLIFRLDEHDKRHMPHL
REENCEQIMHSHCPLSFDSISPYTDDV*

RE41041.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20714-PA 367 GF20714-PA 1..193 1..189 731 76.3 Plus
Dana\GF20714-PA 367 GF20714-PA 217..367 65..227 444 54 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12345-PA 328 GG12345-PA 1..188 1..188 845 91.5 Plus
Dere\GG12345-PA 328 GG12345-PA 186..328 73..227 431 54.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18789-PA 168 GH18789-PA 10..168 66..227 714 80.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-PA 227 CG17780-PA 1..227 1..227 1213 100 Plus
CG17780-PB 345 CG17780-PB 1..188 1..188 990 100 Plus
CG17780-PB 345 CG17780-PB 186..345 73..227 405 50.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22679-PA 345 GI22679-PA 29..204 2..187 543 61.4 Plus
Dmoj\GI22679-PA 345 GI22679-PA 203..345 73..227 387 47.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21980-PA 331 GL21980-PA 26..190 31..187 596 72 Plus
Dper\GL21980-PA 331 GL21980-PA 189..331 73..227 434 54.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14662-PA 331 GA14662-PA 70..190 67..187 591 89.3 Plus
Dpse\GA14662-PA 331 GA14662-PA 189..331 73..227 434 54.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23485-PA 328 GM23485-PA 1..188 1..188 912 95.7 Plus
Dsec\GM23485-PA 328 GM23485-PA 186..328 73..227 443 56.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18291-PA 328 GD18291-PA 1..188 1..188 969 97.9 Plus
Dsim\GD18291-PA 328 GD18291-PA 186..328 73..227 439 55.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23406-PA 234 GJ23406-PA 23..234 62..227 651 61.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22823-PA 354 GK22823-PA 28..211 26..212 562 60.1 Plus
Dwil\GK22823-PA 354 GK22823-PA 214..354 75..227 405 51.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10798-PA 332 GE10798-PA 17..192 17..188 813 90.9 Plus
Dyak\GE10798-PA 332 GE10798-PA 190..332 73..227 439 56.1 Plus

RE41041.hyp Sequence

Translation from 164 to 847

> RE41041.hyp
MTHLSALALLMLHLLLVVPIPASNPPVTQPQPVDNFEGLSPLSKHFDSHM
VSPSTSNIPSSDFDSASGNSTRILRRGKRYLQFSKGSRMSWRTNGKNNLW
TINTLYAYGYGFRANYPFPSIEEQKKDNAVFFRLFKRDLFSKLETALDGH
GFDGRACMLKSFCTAINDVDNPKQKSGMLFKMLKLIFRLDEHDKRHMPHL
REENCEQIMHSHCPLSFDSISPYTDDV*

RE41041.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-PA 227 CG17780-PA 1..227 1..227 1213 100 Plus
CG17780-PB 345 CG17780-PB 1..188 1..188 990 100 Plus
CG17780-PB 345 CG17780-PB 186..345 73..227 405 50.6 Plus