BDGP Sequence Production Resources |
Search the DGRC for RE41041
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 410 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17780-RA |
Protein status: | RE41041.pep: gold |
Preliminary Size: | 1008 |
Sequenced Size: | 1301 |
Gene | Date | Evidence |
---|---|---|
CG17780 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17780 | 2002-02-22 | Blastp of sequenced clone |
CG17780 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17780 | 2008-04-29 | Release 5.5 accounting |
CG17780 | 2008-08-15 | Release 5.9 accounting |
CG17781 | 2008-08-15 | Release 5.9 accounting |
CG17780 | 2008-12-18 | 5.12 accounting |
CG17781 | 2008-12-18 | 5.12 accounting |
1301 bp (1301 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089626
> RE41041.complete AGTAGCCCAGGGGAACTGGAACTGGACACAAGACCCAGACCCACGACGAA CAATGTGAGCGAGGCAATTAAGCCAGGAAAAACGTCAGAAATTGAAGTAG TTTCAGGGCGAAAATCCCTAGCAGTTGAAAGTATTAATTAGTGAACATTT GGAAATTCAGCAACATGACTCACCTGTCAGCGTTGGCATTGCTGATGCTG CACTTGCTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACTCA ACCCCAACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACATT TCGATAGCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCGAC TTTGATTCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAGCG TTATCTTCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGGCA AGAACAATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCTTC CGTGCCAATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAATGC CGTCTTTTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGACTG CTCTGGATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGTTC TGCACTGCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATGCT TTTCAAAATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCGGC ATATGCCGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCCAT TGTCCATTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTTAGCA CTAAGCAATTGGAAAAGAGAACAGATTGGCCAAATAAATATGAATAGATT TATAGAGATAATTTAAAAAATAAGTATGTTGCACTTGATGTTAAACTGAC GACCCTTTTACGAATATAAATGTATTTTTCGAAACAGAAAACCTTCACTG AACATCTGGCAAATGACGGAACTGTAGATTGAACTGGTTTGTTTTTTTGA GCTACATAAAATAAACAAGACACAGATTGAATTGCACATCAAAACAAATA AATAGATCCAGAAAACTGACGGACTGATTGCCTAAAATAATAATACTGAT AGTAATAAAAGCACTTCAAAGTGATTGAAGCCTGGGGTGATTAAATATTG AAGCTCGTACCATGGCACAATATACCACAATACGATTGTTAATTCAGCGC GTTTTTAATAAAAATTTAAAACTTCAAAAAAAAAGAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17780-RA | 1282 | CG17780-RA | 1..1276 | 1..1276 | 6380 | 100 | Plus |
CG17780-RB | 1742 | CG17780-RB | 58..784 | 1..727 | 3635 | 100 | Plus |
CG17781-RB | 2097 | CG17781-RB | 1..710 | 19..728 | 3550 | 100 | Plus |
CG17780-RB | 1742 | CG17780-RB | 1139..1687 | 728..1276 | 2745 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20206259..20206808 | 1276..727 | 2750 | 100 | Minus |
chr3R | 27901430 | chr3R | 20207948..20208388 | 441..1 | 2175 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 20207702..20207878 | 610..434 | 885 | 100 | Minus |
chr3R | 27901430 | chr3R | 20207487..20207604 | 727..610 | 590 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24382919..24383468 | 1276..727 | 2750 | 100 | Minus |
3R | 32079331 | 3R | 24384608..24385048 | 441..1 | 2175 | 99.5 | Minus |
3R | 32079331 | 3R | 24384362..24384538 | 610..434 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24384147..24384264 | 727..610 | 590 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24123750..24124299 | 1276..727 | 2750 | 100 | Minus |
3R | 31820162 | 3R | 24125439..24125879 | 441..1 | 2175 | 99.5 | Minus |
3R | 31820162 | 3R | 24125193..24125369 | 610..434 | 885 | 100 | Minus |
3R | 31820162 | 3R | 24124978..24125095 | 727..610 | 590 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20206253..20206807 | 728..1282 | 99 | <- | Minus |
chr3R | 20207487..20207603 | 611..727 | 100 | <- | Minus |
chr3R | 20207702..20207877 | 435..610 | 100 | <- | Minus |
chr3R | 20207955..20208388 | 1..434 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 1..684 | 165..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 1..684 | 165..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 1..684 | 165..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 1..684 | 165..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 1..684 | 165..848 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 1..1282 | 1..1282 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 1..1282 | 1..1282 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 5..1279 | 1..1275 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 1..1282 | 1..1282 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17780-RA | 5..1279 | 1..1275 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24382913..24383467 | 728..1282 | 99 | <- | Minus |
3R | 24384147..24384263 | 611..727 | 100 | <- | Minus |
3R | 24384362..24384537 | 435..610 | 100 | <- | Minus |
3R | 24384615..24385048 | 1..434 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24382913..24383467 | 728..1282 | 99 | <- | Minus |
3R | 24384147..24384263 | 611..727 | 100 | <- | Minus |
3R | 24384362..24384537 | 435..610 | 100 | <- | Minus |
3R | 24384615..24385048 | 1..434 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24382913..24383467 | 728..1282 | 99 | <- | Minus |
3R | 24384147..24384263 | 611..727 | 100 | <- | Minus |
3R | 24384362..24384537 | 435..610 | 100 | <- | Minus |
3R | 24384615..24385048 | 1..434 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20210084..20210259 | 435..610 | 100 | <- | Minus |
arm_3R | 20208635..20209189 | 728..1282 | 99 | <- | Minus |
arm_3R | 20209869..20209985 | 611..727 | 100 | <- | Minus |
arm_3R | 20210337..20210770 | 1..434 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24123744..24124298 | 728..1282 | 99 | <- | Minus |
3R | 24124978..24125094 | 611..727 | 100 | <- | Minus |
3R | 24125193..24125368 | 435..610 | 100 | <- | Minus |
3R | 24125446..24125879 | 1..434 | 100 | Minus |
Translation from 164 to 847
> RE41041.pep MTHLSALALLMLHLLLVVPIPASNPPVTQPQPVDNFEGLSPLSKHFDSHM VSPSTSNIPSSDFDSASGNSTRILRRGKRYLQFSKGSRMSWRTNGKNNLW TINTLYAYGYGFRANYPFPSIEEQKKDNAVFFRLFKRDLFSKLETALDGH GFDGRACMLKSFCTAINDVDNPKQKSGMLFKMLKLIFRLDEHDKRHMPHL REENCEQIMHSHCPLSFDSISPYTDDV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20714-PA | 367 | GF20714-PA | 1..193 | 1..189 | 731 | 76.3 | Plus |
Dana\GF20714-PA | 367 | GF20714-PA | 217..367 | 65..227 | 444 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12345-PA | 328 | GG12345-PA | 1..188 | 1..188 | 845 | 91.5 | Plus |
Dere\GG12345-PA | 328 | GG12345-PA | 186..328 | 73..227 | 431 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18789-PA | 168 | GH18789-PA | 10..168 | 66..227 | 714 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17780-PA | 227 | CG17780-PA | 1..227 | 1..227 | 1213 | 100 | Plus |
CG17780-PB | 345 | CG17780-PB | 1..188 | 1..188 | 990 | 100 | Plus |
CG17780-PB | 345 | CG17780-PB | 186..345 | 73..227 | 405 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22679-PA | 345 | GI22679-PA | 29..204 | 2..187 | 543 | 61.4 | Plus |
Dmoj\GI22679-PA | 345 | GI22679-PA | 203..345 | 73..227 | 387 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21980-PA | 331 | GL21980-PA | 26..190 | 31..187 | 596 | 72 | Plus |
Dper\GL21980-PA | 331 | GL21980-PA | 189..331 | 73..227 | 434 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14662-PA | 331 | GA14662-PA | 70..190 | 67..187 | 591 | 89.3 | Plus |
Dpse\GA14662-PA | 331 | GA14662-PA | 189..331 | 73..227 | 434 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23485-PA | 328 | GM23485-PA | 1..188 | 1..188 | 912 | 95.7 | Plus |
Dsec\GM23485-PA | 328 | GM23485-PA | 186..328 | 73..227 | 443 | 56.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18291-PA | 328 | GD18291-PA | 1..188 | 1..188 | 969 | 97.9 | Plus |
Dsim\GD18291-PA | 328 | GD18291-PA | 186..328 | 73..227 | 439 | 55.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23406-PA | 234 | GJ23406-PA | 23..234 | 62..227 | 651 | 61.4 | Plus |
Translation from 164 to 847
> RE41041.hyp MTHLSALALLMLHLLLVVPIPASNPPVTQPQPVDNFEGLSPLSKHFDSHM VSPSTSNIPSSDFDSASGNSTRILRRGKRYLQFSKGSRMSWRTNGKNNLW TINTLYAYGYGFRANYPFPSIEEQKKDNAVFFRLFKRDLFSKLETALDGH GFDGRACMLKSFCTAINDVDNPKQKSGMLFKMLKLIFRLDEHDKRHMPHL REENCEQIMHSHCPLSFDSISPYTDDV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17780-PA | 227 | CG17780-PA | 1..227 | 1..227 | 1213 | 100 | Plus |
CG17780-PB | 345 | CG17780-PB | 1..188 | 1..188 | 990 | 100 | Plus |
CG17780-PB | 345 | CG17780-PB | 186..345 | 73..227 | 405 | 50.6 | Plus |