Clone RE41083 Report

Search the DGRC for RE41083

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:410
Well:83
Vector:pFlc-1
Associated Gene/TranscriptCG8708-RB
Protein status:RE41083.pep: gold
Preliminary Size:1474
Sequenced Size:1685

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8708 2002-10-12 Blastp of sequenced clone
CG8708 2003-01-01 Sim4 clustering to Release 3
CG8708 2008-04-29 Release 5.5 accounting
CG8708 2008-08-15 Release 5.9 accounting
CG8708 2008-12-18 5.12 accounting

Clone Sequence Records

RE41083.complete Sequence

1685 bp (1685 high quality bases) assembled on 2002-10-12

GenBank Submission: BT001643

> RE41083.complete
AGTCGCTTGGCAATCCCATTAGGGTTCAGTTGCGGGTGAAAATAGAGTCT
TTGACGTACGTGCAAGACAATAATTGGACACATAACCCACTTCTTGTTTG
CACAAGTGAACCATTCTGTGTTCCCAGTTGAAAGGGAAACCCCAATAAGT
GCAGAATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGCTAACAGAAGCT
CCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCTGGTTTGGTGGT
CGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCCGCACGAGAGTC
TCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGGTGGCCACCGGT
GGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGATCATCGCAACGA
CAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACGCATCCTCTGCT
GGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTCGCCATGTGAAG
CGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATGAGTTCCGGCGC
GGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGAGGGACGGGAGA
ATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCTATCATCACCAC
TATAACGACGCCGACTTCTTCTACAAGGCCGATGACGACACTTACGCCGT
GATCGAGAACATGCGGTATATGCTCTATCCGTACAATCCCGAAACACCCG
TGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGGGCTACATGTCC
GGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGTCGCTTCGTGGT
CGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCACGGTGGTCAACG
AGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACGTCACCGCCGGC
GATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCCTTCATACCGGA
GCATCACTTGATCCCAGCCAAGGCGGATAAAAACTTTTGGTACTGGAACT
ACCTTTACTACAAGACGGATGACGGTCTCGACTGCTGCTCGGACTTGGCC
ATCTCCTTTCACTACGTAGCTCCGAATTCCTTCTATGTCCTGGACTATCT
CATCTACCACTTGAAACCCTACGGCCTACTGCGATCCCTGGAGCCTCTGC
CCGCCAAACTCAAAGTGGGTCAGTTTCTGCCGCCTCCCGTGGAGGCCAGG
GGGCGCCTGGCCAGTAACGAGGATTCCGCCGATGATTACGACAGGATCTA
TACGACCACGACCGAAAAGCCAAAGGAGCCCGATGCTCGGGAAATGGACT
CCAAGGAGGTGGAAAAAGAGGATGCCAAATACAGGGAAAAGCTTTCAAAG
GAGGACGAGGAACGCGAAGACTCGCGAAAAACTGACAATGATTCGGAGTA
TACTGAGGAGGAAACGGAAAAGCGTTCCAAGTCCAAGGAAACATCGAAAG
AAAATTAAAATTTATTGAGTTTACTTGGCAGGCTTTGGAACTGAGCTGTT
TCTGAGTCTACGCCGCTCATCCGGTTTATACATTTTAATAAAAATTTTCT
TAGATTATTATTTTAGAAGGACTATTTTCAAATACATCATAATAGAGATA
AAGTAAATGCAGTAATGAGAAAAAAAAAAAAAAAA

RE41083.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-RB 1802 CG8708-RB 118..1788 1..1671 8325 99.8 Plus
CG8708-RA 1821 CG8708-RA 94..1167 1..1074 5370 100 Plus
CG8708-RA 1821 CG8708-RA 1220..1817 1074..1671 2960 99.6 Plus
C1GalTA-RA 2014 C1GalTA-RA 749..1046 581..878 500 77.8 Plus
C1GalTA-RA 2014 C1GalTA-RA 612..731 444..563 270 81.6 Plus
C1GalTA-RA 2014 C1GalTA-RA 1136..1285 968..1117 210 76 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4047573..4048450 1074..197 4375 99.9 Minus
chr2R 21145070 chr2R 4046927..4047520 1667..1074 2925 99.5 Minus
chr2R 21145070 chr2R 4048552..4048749 198..1 990 100 Minus
chr2L 23010047 chr2L 8943345..8943779 878..444 705 77.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8160054..8160931 1074..197 4390 100 Minus
2R 25286936 2R 8159404..8160001 1671..1074 2960 99.7 Minus
2R 25286936 2R 8161033..8161230 198..1 990 100 Minus
2L 23513712 2L 8944428..8944862 878..444 705 77.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8161253..8162130 1074..197 4390 100 Minus
2R 25260384 2R 8160603..8161200 1671..1074 2960 99.6 Minus
2R 25260384 2R 8162232..8162429 198..1 990 100 Minus
2L 23513712 2L 8944428..8944725 878..581 500 77.8 Minus
2L 23513712 2L 8944743..8944862 563..444 270 81.6 Minus
Blast to na_te.dros performed on 2019-03-16 23:00:45 has no hits.

RE41083.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:01:24 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4046925..4047520 1074..1669 99 <- Minus
chr2R 4047574..4048448 199..1073 99 <- Minus
chr2R 4048552..4048749 1..198 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:15:52 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 1..1353 156..1508 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:11:34 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 1..1353 156..1508 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:18:30 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 1..1353 156..1508 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:02:25 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 1..1353 156..1508 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:52 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 1..1353 156..1508 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:33:23 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 1..1614 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:11:34 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 5..1672 1..1669 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:18:30 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 6..1673 1..1669 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:02:25 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 1..1614 1..1614 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:52 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
CG8708-RB 6..1673 1..1669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:24 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8159406..8160001 1074..1669 99 <- Minus
2R 8160055..8160929 199..1073 100 <- Minus
2R 8161033..8161230 1..198 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:24 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8159406..8160001 1074..1669 99 <- Minus
2R 8160055..8160929 199..1073 100 <- Minus
2R 8161033..8161230 1..198 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:24 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8159406..8160001 1074..1669 99 <- Minus
2R 8160055..8160929 199..1073 100 <- Minus
2R 8161033..8161230 1..198 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:18:30 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4046911..4047506 1074..1669 99 <- Minus
arm_2R 4047560..4048434 199..1073 100 <- Minus
arm_2R 4048538..4048735 1..198 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:34:07 Download gff for RE41083.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8160605..8161200 1074..1669 99 <- Minus
2R 8161254..8162128 199..1073 100 <- Minus
2R 8162232..8162429 1..198 100   Minus

RE41083.pep Sequence

Translation from 155 to 1507

> RE41083.pep
MTSASLLSRSLLTEAPRSKNRSVFTLIAGLVVGYCLAQIFSSIAPHESLY
PYLSRRFSDSQVATGGQLAPEQSGLKHDHRNDNVSVAEQLKKEVRILCWV
MTNPTNHKKKARHVKRTWGKRCNILLFMSSGADEELPTVKLDVGEGRENL
WAKVKEAFKYVYHHHYNDADFFYKADDDTYAVIENMRYMLYPYNPETPVH
FGFKFKPFVKQGYMSGGAGYILSREALRRFVVEGIPNPKMCLPGTVVNED
IEIGRCMENLNVTAGDSRDEIGRGRMFPFIPEHHLIPAKADKNFWYWNYL
YYKTDDGLDCCSDLAISFHYVAPNSFYVLDYLIYHLKPYGLLRSLEPLPA
KLKVGQFLPPPVEARGRLASNEDSADDYDRIYTTTTEKPKEPDAREMDSK
EVEKEDAKYREKLSKEDEEREDSRKTDNDSEYTEEETEKRSKSKETSKEN
*

RE41083.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14913-PA 452 GF14913-PA 13..450 13..442 1818 76.3 Plus
Dana\GF15693-PA 390 GF15693-PA 1..367 1..361 1297 63.3 Plus
Dana\GF16008-PA 358 GF16008-PA 24..351 16..360 705 43.4 Plus
Dana\GF14985-PA 384 GF14985-PA 37..341 56..351 701 45.6 Plus
Dana\GF24418-PA 341 GF24418-PA 3..322 21..357 656 41.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10669-PA 453 GG10669-PA 1..451 1..450 1974 81.5 Plus
Dere\GG24047-PA 388 GG24047-PA 1..364 1..359 1297 63.3 Plus
Dere\GG24890-PA 386 GG24890-PA 78..340 86..351 706 50.2 Plus
Dere\GG18081-PA 374 GG18081-PA 58..367 57..360 683 44.1 Plus
Dere\GG14746-PA 339 GG14746-PA 56..322 86..356 615 44.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12988-PA 420 GH12988-PA 1..412 6..413 1482 67.5 Plus
Dgri\GH12348-PA 382 GH12348-PA 2..382 26..402 1452 71.4 Plus
Dgri\GH25123-PA 389 GH25123-PA 1..371 1..365 1297 62.6 Plus
Dgri\GH25081-PA 695 GH25081-PA 338..668 18..361 1191 62.1 Plus
Dgri\GH25081-PA 695 GH25081-PA 6..336 11..355 1124 60.1 Plus
Dgri\GH25082-PA 347 GH25082-PA 1..338 26..377 1118 58.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-PD 450 CG8708-PD 1..450 1..450 2401 100 Plus
CG8708-PB 450 CG8708-PB 1..450 1..450 2401 100 Plus
CG8708-PC 444 CG8708-PC 1..444 7..450 2344 98.4 Plus
C1GalTA-PA 388 CG9520-PA 1..364 1..359 1276 63 Plus
C1GalTA-PC 388 CG9520-PC 1..364 1..359 1276 63 Plus
C1GalTA-PB 388 CG9520-PB 1..364 1..359 1276 63 Plus
CG2975-PA 385 CG2975-PA 7..338 17..351 696 43.6 Plus
tgy-PE 373 CG7440-PE 86..366 83..360 687 46.5 Plus
tgy-PC 373 CG7440-PC 86..366 83..360 687 46.5 Plus
CG34057-PB 344 CG34057-PB 61..323 86..352 609 44.8 Plus
CG34057-PA 355 CG34057-PA 72..334 86..352 609 44.8 Plus
CG34056-PA 341 CG34056-PA 3..314 21..352 588 39.3 Plus
CG18558-PB 588 CG18558-PB 309..572 83..347 570 42.5 Plus
CG2983-PB 344 CG2983-PB 62..343 83..379 555 38.9 Plus
CG3119-PA 355 CG3119-PA 62..311 95..339 463 39.8 Plus
CG34452-PC 318 CG34452-PC 53..300 95..341 360 32.1 Plus
CG34452-PB 318 CG34452-PB 53..300 95..341 360 32.1 Plus
CG34451-PC 253 CG34451-PC 7..242 106..340 311 31.7 Plus
CG34451-PA 253 CG34451-PA 7..242 106..340 311 31.7 Plus
CG3119-PB 184 CG3119-PB 62..177 95..208 277 46.6 Plus
CG18558-PB 588 CG18558-PB 11..292 36..349 271 26.5 Plus
CG34451-PB 166 CG34451-PB 7..155 193..340 172 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17446-PA 390 GI17446-PA 3..390 7..398 1427 69.1 Plus
Dmoj\GI12068-PA 352 GI12068-PA 21..352 61..398 1427 78.4 Plus
Dmoj\GI12045-PA 391 GI12045-PA 1..371 1..365 1324 64.5 Plus
Dmoj\GI12057-PA 440 GI12057-PA 35..267 75..307 974 71.2 Plus
Dmoj\GI12912-PA 264 GI12912-PA 10..261 21..306 872 59.1 Plus
Dmoj\GI12057-PA 440 GI12057-PA 231..440 185..390 552 51.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26713-PA 452 GL26713-PA 14..449 14..439 1763 78.1 Plus
Dper\GL25549-PA 390 GL25549-PA 1..368 1..363 1306 63.1 Plus
Dper\GL15447-PA 379 GL15447-PA 75..341 81..351 735 50.7 Plus
Dper\GL14674-PA 303 GL14674-PA 3..283 57..337 682 45.5 Plus
Dper\GL16899-PA 341 GL16899-PA 3..315 21..349 652 42.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29031-PA 452 GA29031-PA 14..449 14..439 1763 78.1 Plus
Dpse\GA21851-PA 390 GA21851-PA 1..368 1..363 1306 63.1 Plus
Dpse\GA28803-PA 347 GA28803-PA 75..341 81..351 737 51.1 Plus
Dpse\GA20354-PA 369 GA20354-PA 59..362 57..360 711 44 Plus
Dpse\GA23793-PA 340 GA23793-PA 3..312 21..351 651 42 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20714-PA 446 GM20714-PA 1..446 1..450 2185 93.4 Plus
Dsec\GM12650-PA 379 GM12650-PA 1..355 11..359 1265 62.5 Plus
Dsec\GM18370-PA 383 GM18370-PA 78..336 87..351 692 49.6 Plus
Dsec\GM22770-PA 373 GM22770-PA 57..366 57..360 689 44.1 Plus
Dsec\GM14364-PA 335 GM14364-PA 52..318 86..356 597 44.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10181-PA 446 GD10181-PA 1..446 1..450 2212 94.5 Plus
Dsim\GD22375-PA 388 GD22375-PA 1..364 1..359 1289 62.7 Plus
Dsim\GD23186-PA 386 GD23186-PA 78..339 87..351 707 50.4 Plus
Dsim\GD24465-PA 373 GD24465-PA 57..366 57..360 691 44.1 Plus
Dsim\GD13582-PA 333 GD13582-PA 3..316 21..356 603 39.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14139-PA 441 GJ14139-PA 1..413 6..419 1584 70.1 Plus
Dvir\GJ14135-PA 386 GJ14135-PA 1..377 1..371 1301 62.7 Plus
Dvir\GJ14138-PA 335 GJ14138-PA 16..324 25..359 1232 68.1 Plus
Dvir\GJ14141-PA 589 GJ14141-PA 309..575 83..347 710 48.9 Plus
Dvir\GJ15256-PA 373 GJ15256-PA 73..373 60..365 685 44.2 Plus
Dvir\GJ14141-PA 589 GJ14141-PA 31..296 34..349 285 26.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24753-PA 440 GK24753-PA 1..423 1..427 1618 70.7 Plus
Dwil\GK24752-PA 435 GK24752-PA 3..402 2..399 1572 71.7 Plus
Dwil\GK24751-PA 324 GK24751-PA 7..324 49..363 1354 76.8 Plus
Dwil\GK14790-PA 390 GK14790-PA 1..390 1..389 1287 59.1 Plus
Dwil\GK14791-PA 371 GK14791-PA 1..367 1..361 1260 61.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23251-PA 451 GE23251-PA 1..451 1..450 2106 91.8 Plus
Dyak\GE10709-PA 388 GE10709-PA 1..364 1..359 1304 63.6 Plus
Dyak\GE18184-PA 385 GE18184-PA 76..338 86..351 697 50 Plus
Dyak\GE15477-PA 375 GE15477-PA 53..368 53..360 677 43 Plus
Dyak\GE21108-PA 339 GE21108-PA 56..323 86..357 633 45.1 Plus

RE41083.hyp Sequence

Translation from 155 to 1507

> RE41083.hyp
MTSASLLSRSLLTEAPRSKNRSVFTLIAGLVVGYCLAQIFSSIAPHESLY
PYLSRRFSDSQVATGGQLAPEQSGLKHDHRNDNVSVAEQLKKEVRILCWV
MTNPTNHKKKARHVKRTWGKRCNILLFMSSGADEELPTVKLDVGEGRENL
WAKVKEAFKYVYHHHYNDADFFYKADDDTYAVIENMRYMLYPYNPETPVH
FGFKFKPFVKQGYMSGGAGYILSREALRRFVVEGIPNPKMCLPGTVVNED
IEIGRCMENLNVTAGDSRDEIGRGRMFPFIPEHHLIPAKADKNFWYWNYL
YYKTDDGLDCCSDLAISFHYVAPNSFYVLDYLIYHLKPYGLLRSLEPLPA
KLKVGQFLPPPVEARGRLASNEDSADDYDRIYTTTTEKPKEPDAREMDSK
EVEKEDAKYREKLSKEDEEREDSRKTDNDSEYTEEETEKRSKSKETSKEN
*

RE41083.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8708-PD 450 CG8708-PD 1..450 1..450 2401 100 Plus
CG8708-PB 450 CG8708-PB 1..450 1..450 2401 100 Plus
CG8708-PC 444 CG8708-PC 1..444 7..450 2344 98.4 Plus
C1GalTA-PA 388 CG9520-PA 1..364 1..359 1276 63 Plus
C1GalTA-PC 388 CG9520-PC 1..364 1..359 1276 63 Plus