BDGP Sequence Production Resources |
Search the DGRC for RE41154
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 411 |
Well: | 54 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17508-RA |
Protein status: | RE41154.pep: gold |
Sequenced Size: | 1239 |
Gene | Date | Evidence |
---|---|---|
CG17508-RA | 2011-07-29 | Manual selection by Sue Celniker |
1239 bp assembled on 2011-09-16
GenBank Submission: BT128906.1
> RE41154.complete GCTTGTAGTTGGGTTGGTTAGTCGGCTTGATAAGTTTAATCAGAATAAGC TTTTATTTTGCATTTGCCAAATACAATGTACATCACAACGGGCAAAACGT TTGCGGTGCTGAAAGGACCTTTACGTGATTGTTTTTTTCTTAGTAAGAGA TGGCCAGCTGTTCAACAACTGCACTTAAGTGTCGCAATGGGAAATTATGT GAATGAAGCCTCAATTCCCCTTCCAATCAATGTGGACTCTGCGGAAACAA CTCGATTCTCCCCCCAGCGCTCGCGTGACATTTCGTCTACAGTGATTAAT GCACAAGCACCAATCTCAAGCATTGATATCACAACTGACAACAGTTTTCA TGCAGTCCTAAGCGATCCAAATATTTGTCAAGATCCACATGTACAGTCCT ATGATTGTTTCGGGTTGATCAGTCTTAATTCCGCGATGCAAAGCAATGTA CCAACACCGTTTGGGGGGCTTAACAAGTTTTCTCATCTGAACATGCCTGG CGGACAATGGTCCCAGGAATTCAAGTTTACAGCGCAAAACATGCAGTGCT CTCACTACAGCGGTCTTCGCGAAAGTTTGCGAGCGGATTGGGCGACTTAC GATCAGAATGCTACTCTTAAAACGAATGACCAAGGGTTGTTTAATCGAAG ATATTATAGCACCCAATCACCTATGCAAAACTCTTCCACAAAAACACCTA CAGGTGCAAAACTAAGTAAAAGTGAGCAGCTGAAGAGGGCATTTAAGGAA TATGGAGCGCCAATTGTTGCGTTTCACGTAGGAATTTCACTGATTTCTCT TGCCGGTTTCTATGTGCTTGTATCAAGTGGCATAAACTTGGTCCCAGCTC TGGAGTGTATTGGAATTGCATCACCCGCTATTGTAGAAAAAGTGGCAACG GGGAGCACCTTTGTTGTTGCGTATGCCGTACACAAAGTCTTTGCCCCTGC TAGAATAAGTATCACGTTAGGTTCTGTGCCATTTGTTGTACGCTATATTC GATCTAAGAAATCGCAAATACCAAAGCCAAAAAATACTTAGAGTTGAGAA CAATGAAGTCCTTTCAATAAGGGATTTCATTTTTTATAATTTGTTTTTTA AAGTTTAGATGGAAATGTTTATTTGTAGGAAAAGCGTACTACTACCATCT AGGCAGATTAATCTAATGAGAAATTATTTGCTTAGCTATTCAAAGCAATG AAAAGACGAGGTTTATAAAGCGGTAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 1496384..1496863 | 156..635 | 2400 | 100 | Plus |
chr2R | 21145070 | chr2R | 1498563..1498959 | 826..1222 | 1985 | 100 | Plus |
chr2R | 21145070 | chr2R | 1497435..1497629 | 633..827 | 975 | 100 | Plus |
chr2R | 21145070 | chr2R | 1496014..1496170 | 1..157 | 785 | 100 | Plus |
chrX | 22417052 | chrX | 21007656..21007737 | 1094..1175 | 305 | 91.5 | Plus |
chr2L | 23010047 | chr2L | 3128713..3128965 | 713..965 | 305 | 74.7 | Plus |
chrX | 22417052 | chrX | 21034568..21034639 | 1175..1104 | 240 | 88.9 | Minus |
chr3L | 24539361 | chr3L | 19991863..19991918 | 1119..1174 | 220 | 92.9 | Plus |
chr4 | 1351717 | chr4 | 1264654..1264706 | 1094..1146 | 190 | 90.6 | Plus |
chr3R | 27901430 | chr3R | 1558349..1558407 | 1117..1175 | 190 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 5609011..5609490 | 156..635 | 2400 | 100 | Plus |
2R | 25286936 | 2R | 5611190..5611586 | 826..1222 | 1985 | 100 | Plus |
2R | 25286936 | 2R | 5610062..5610256 | 633..827 | 975 | 100 | Plus |
2R | 25286936 | 2R | 5608641..5608797 | 1..157 | 785 | 100 | Plus |
2L | 23513712 | 2L | 3129045..3129297 | 713..965 | 320 | 75.1 | Plus |
X | 23542271 | X | 21142499..21142580 | 1094..1175 | 305 | 91.5 | Plus |
X | 23542271 | X | 21169411..21169482 | 1175..1104 | 240 | 88.9 | Minus |
3L | 28110227 | 3L | 20002549..20002604 | 1119..1174 | 220 | 92.9 | Plus |
4 | 1348131 | 4 | 1261072..1261124 | 1094..1146 | 190 | 90.6 | Plus |
3R | 32079331 | 3R | 5732702..5732760 | 1117..1175 | 190 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 5610210..5610689 | 156..635 | 2400 | 100 | Plus |
2R | 25260384 | 2R | 5612389..5612785 | 826..1222 | 1985 | 100 | Plus |
2R | 25260384 | 2R | 5611261..5611455 | 633..827 | 975 | 100 | Plus |
2R | 25260384 | 2R | 5609840..5609996 | 1..157 | 785 | 100 | Plus |
2L | 23513712 | 2L | 3129045..3129297 | 713..965 | 320 | 75 | Plus |
X | 23527363 | X | 21127591..21127672 | 1094..1175 | 305 | 91.4 | Plus |
X | 23527363 | X | 21154503..21154574 | 1175..1104 | 240 | 88.8 | Minus |
3L | 28103327 | 3L | 19995649..19995704 | 1119..1174 | 220 | 92.8 | Plus |
X | 23527363 | X | 16713795..16713852 | 1170..1116 | 190 | 91.3 | Minus |
4 | 1331231 | 4 | 1244172..1244224 | 1094..1146 | 190 | 90.5 | Plus |
3R | 31820162 | 3R | 5473533..5473591 | 1117..1175 | 190 | 88.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 1496014..1496170 | 1..157 | 100 | -> | Plus |
chr2R | 1496386..1496862 | 158..634 | 100 | -> | Plus |
chr2R | 1497437..1497629 | 635..827 | 100 | -> | Plus |
chr2R | 1498565..1498961 | 828..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17508-RA | 1..966 | 76..1041 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17508-RA | 1..966 | 76..1041 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17508-RA | 1..966 | 76..1041 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17508-RA | 18..1241 | 1..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17508-RA | 7..1228 | 1..1222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17508-RA | 7..1228 | 1..1222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5610064..5610256 | 635..827 | 100 | -> | Plus |
2R | 5608641..5608797 | 1..157 | 100 | -> | Plus |
2R | 5609013..5609489 | 158..634 | 100 | -> | Plus |
2R | 5611192..5611588 | 828..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5610064..5610256 | 635..827 | 100 | -> | Plus |
2R | 5608641..5608797 | 1..157 | 100 | -> | Plus |
2R | 5609013..5609489 | 158..634 | 100 | -> | Plus |
2R | 5611192..5611588 | 828..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5610064..5610256 | 635..827 | 100 | -> | Plus |
2R | 5608641..5608797 | 1..157 | 100 | -> | Plus |
2R | 5609013..5609489 | 158..634 | 100 | -> | Plus |
2R | 5611192..5611588 | 828..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 1496146..1496302 | 1..157 | 100 | -> | Plus |
arm_2R | 1496518..1496994 | 158..634 | 100 | -> | Plus |
arm_2R | 1497569..1497761 | 635..827 | 100 | -> | Plus |
arm_2R | 1498697..1499093 | 828..1224 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5610212..5610688 | 158..634 | 100 | -> | Plus |
2R | 5611263..5611455 | 635..827 | 100 | -> | Plus |
2R | 5612391..5612787 | 828..1224 | 99 | Plus | |
2R | 5609840..5609996 | 1..157 | 100 | -> | Plus |
Translation from 75 to 1040
> RE41154.hyp MYITTGKTFAVLKGPLRDCFFLSKRWPAVQQLHLSVAMGNYVNEASIPLP INVDSAETTRFSPQRSRDISSTVINAQAPISSIDITTDNSFHAVLSDPNI CQDPHVQSYDCFGLISLNSAMQSNVPTPFGGLNKFSHLNMPGGQWSQEFK FTAQNMQCSHYSGLRESLRADWATYDQNATLKTNDQGLFNRRYYSTQSPM QNSSTKTPTGAKLSKSEQLKRAFKEYGAPIVAFHVGISLISLAGFYVLVS SGINLVPALECIGIASPAIVEKVATGSTFVVAYAVHKVFAPARISITLGS VPFVVRYIRSKKSQIPKPKNT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17508-PA | 321 | CG17508-PA | 1..321 | 1..321 | 1659 | 100 | Plus |
CG17508-PB | 194 | CG17508-PB | 1..187 | 1..187 | 993 | 100 | Plus |
CG15403-PA | 200 | CG15403-PA | 53..200 | 164..321 | 421 | 60.1 | Plus |
Translation from 75 to 1040
> RE41154.pep MYITTGKTFAVLKGPLRDCFFLSKRWPAVQQLHLSVAMGNYVNEASIPLP INVDSAETTRFSPQRSRDISSTVINAQAPISSIDITTDNSFHAVLSDPNI CQDPHVQSYDCFGLISLNSAMQSNVPTPFGGLNKFSHLNMPGGQWSQEFK FTAQNMQCSHYSGLRESLRADWATYDQNATLKTNDQGLFNRRYYSTQSPM QNSSTKTPTGAKLSKSEQLKRAFKEYGAPIVAFHVGISLISLAGFYVLVS SGINLVPALECIGIASPAIVEKVATGSTFVVAYAVHKVFAPARISITLGS VPFVVRYIRSKKSQIPKPKNT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19740-PA | 67 | GF19740-PA | 1..67 | 255..321 | 192 | 56.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23170-PA | 329 | GG23170-PA | 1..328 | 1..315 | 1475 | 85.1 | Plus |
Dere\GG24922-PA | 135 | GG24922-PA | 14..135 | 194..321 | 425 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13417-PA | 333 | GH13417-PA | 1..333 | 1..321 | 937 | 57.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17508-PA | 321 | CG17508-PA | 1..321 | 1..321 | 1659 | 100 | Plus |
CG17508-PB | 194 | CG17508-PB | 1..187 | 1..187 | 993 | 100 | Plus |
CG15403-PA | 200 | CG15403-PA | 53..200 | 164..321 | 421 | 60.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17654-PA | 320 | GI17654-PA | 5..317 | 24..315 | 933 | 60.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21148-PA | 356 | GL21148-PA | 50..346 | 23..311 | 1009 | 68.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA29089-PA | 356 | GA29089-PA | 50..346 | 23..311 | 1000 | 68.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18396-PA | 135 | GM18396-PA | 4..135 | 183..321 | 434 | 66.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10376-PA | 321 | GD10376-PA | 1..321 | 1..321 | 1574 | 92.2 | Plus |
Dsim\GD23209-PA | 134 | GD23209-PA | 4..134 | 184..321 | 432 | 65.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18221-PA | 317 | GJ18221-PA | 1..317 | 1..321 | 963 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15336-PA | 346 | GK15336-PA | 1..345 | 1..320 | 1043 | 61.3 | Plus |