Clone RE41410 Report

Search the DGRC for RE41410

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:414
Well:10
Vector:pFlc-1
Associated Gene/TranscriptCG7264-RA
Protein status:RE41410.pep: gold
Preliminary Size:1146
Sequenced Size:1716

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7264 2002-01-01 Sim4 clustering to Release 2
CG7264 2002-03-21 Blastp of sequenced clone
CG7264 2003-01-01 Sim4 clustering to Release 3
CG7264 2008-04-29 Release 5.5 accounting
CG7264 2008-08-15 Release 5.9 accounting
CG7264 2008-12-18 5.12 accounting

Clone Sequence Records

RE41410.complete Sequence

1716 bp (1716 high quality bases) assembled on 2002-03-21

GenBank Submission: AY094875

> RE41410.complete
AGTTCGAACTTAAATTTCTTTGCCAAACACCTACGTATATGTACATATAT
ATGGGCAATATGTACATTAGGTGATTATTTTATGGTCGCTTTAACGATTA
TTGGAACCGTCAAGCGACTCGAGCTGCAAAAATTAAAGAATTCGATTGAC
ATGAATATATATATATGTAAATAGTCTGTAACTAGTAGGTTACAGAGGTA
GTAGTAGAGGCAAACAATAAACAAAGCACCCAGCAACCGGGCAAACAAAG
TCAACTCAGGCATATATCCACATCCTACTAACAAGAAGAGACAGACATAT
CGACCTCGAATACAGTTGAACATCTTTTATAACTAACTCCGGCACAATGA
CGCTCAAAATCGGTATATGCACCAAGCAGGATCTCGACGAGGCGATGAAG
CTGCAGAAGCGGGAGCAGTACGAAGATGAGCGGAAGCGGCGCATTTTTAA
TGCCAAACAGCGTCTTTACGGGCTCGACCTAGAAATGCTGGATCGCCAAA
TACTTGAGAAAAAGAAGCAGCGAACCGCCCAGATGGAGTGCGACAAGAAA
TTTGAAGAACAGGAGCAGCTGCAGAAGCGTCTGATCCTGGCCCAGGAAAT
GGAGTTGGAGAAAAAACAGCGTGTGGTGGACTCGGATCTTAACTATTATC
GCTGCCGCTATCAGCGCAAGGAGCAGCGCCGCGAATTCGACCTAAATGAT
CCGAATTTCTTGAAGAAGGCACGTCCAACAAGAGTCGCCGACAATGACAT
TTCGCTGGGCGTGTCCAGTGCCCAGATCTTTCAAGGCGAGGACCTCTATA
ACTCTGACAGAAAGCAGCGGCAGCGGGAGCAGCAAAGAGCCTGGCTGGAT
CAGCAAGTGCAGGAGCGTAAGAGGGCGGAGGATGCTCGCAAGCAGGCCGA
TAATGTGTTGATGGACAACGTTGGTTGCAGAGACAAGCATCTGCAGGAGA
TGGCCAAGTCTGATCACCAGATGCGCAACCAAGTCATCCAGCGAGTGCGT
CAGTTCAATATCAACATGGCCAAGCAGAAGCAATTGGACCGCGAAAGGGA
AAAGCGTGAAAAGTACGAGGATGACATGGCCGAGATCTATAACATGCTCT
CCAGCGATATGCTAACTGAAAATCCGGATGTGGCTCAATCGCGCACCGAT
CCGAACAAGAAGATTGCCTTCATGTATCGCGGCATGACGCCCGAAGAACT
TCGCGTGTTTCGTCTTGGACAAGATCAGCAGCTTCGTTTGTCTATTCAGC
GCAAGACGGAGGCCCAGATGATGGACAAACAGTGGGAGCAATACTCCATT
AATATGGACCGCACCCTGGTCCTTCACCAAATCGAGGATGATCGCCGACG
TAAGGCGGAATTCGATGAGCTGATGCGGGCGAATTCCAAGTTGGCCGTGG
AGCAGGATCGCCAGCGCAAGGAAGCCCTTGTGGGCCTAACCAATGCCGTC
TCCGATGACTTTTACGATCAGTTCAACAAGAACTCACGTTAGTGGGATTG
TATTGAAGTTCCCAACCAAGACGATTCGAGAATAATGAGCTGGATGCGAT
TAGAAAGCTGCCTCACTTTCTTGTGCAGCAACTTTCCATAGGCGTCCAGA
ACATTGTACTATTTTAAAAATACAATCTTTGTTGGGAATCTTCACGACGA
AATTATAATGTTCATGTTGGAAACAAAGCATTTCAAATATTTAAAAATTT
AAAAAAAAAAAAAAAA

RE41410.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-RA 1784 CG7264-RA 1..1713 1..1713 8550 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11820454..11821679 472..1697 6085 99.8 Plus
chr3L 24539361 chr3L 11820088..11820398 156..472 1385 96.5 Plus
chr3L 24539361 chr3L 11819874..11820033 1..160 770 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11829616..11830857 472..1713 6210 100 Plus
3L 28110227 3L 11829244..11829560 156..472 1570 99.7 Plus
3L 28110227 3L 11829030..11829189 1..160 785 99.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11822716..11823957 472..1713 6210 100 Plus
3L 28103327 3L 11822344..11822660 156..472 1570 99.6 Plus
3L 28103327 3L 11822130..11822289 1..160 785 99.3 Plus
Blast to na_te.dros performed 2019-03-15 19:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
hopper2 1593 hopper2 HOPPER2 1593bp 1261..1322 162..224 123 68.3 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 3028..3109 1266..1341 116 65.9 Plus

RE41410.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:52:27 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11820093..11820398 161..472 96 -> Plus
chr3L 11819874..11820033 1..160 98 -> Plus
chr3L 11820455..11821663 473..1681 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:16:05 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1146 347..1492 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:24:45 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1146 347..1492 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:59:18 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1146 347..1492 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:00:28 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1146 347..1492 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:17 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1146 347..1492 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:51:23 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1700 1..1700 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:24:45 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1700 1..1700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:59:18 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1700 1..1700 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:00:28 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1700 1..1700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:17 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1700 1..1700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:27 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11829030..11829189 1..160 99 -> Plus
3L 11829249..11829560 161..472 100 -> Plus
3L 11829617..11830844 473..1700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:27 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11829030..11829189 1..160 99 -> Plus
3L 11829249..11829560 161..472 100 -> Plus
3L 11829617..11830844 473..1700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:27 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11829030..11829189 1..160 99 -> Plus
3L 11829249..11829560 161..472 100 -> Plus
3L 11829617..11830844 473..1700 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:59:18 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11822130..11822289 1..160 99 -> Plus
arm_3L 11822349..11822660 161..472 100 -> Plus
arm_3L 11822717..11823944 473..1700 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:33:32 Download gff for RE41410.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11822349..11822660 161..472 100 -> Plus
3L 11822717..11823944 473..1700 100   Plus
3L 11822130..11822289 1..160 99 -> Plus

RE41410.pep Sequence

Translation from 346 to 1491

> RE41410.pep
MTLKIGICTKQDLDEAMKLQKREQYEDERKRRIFNAKQRLYGLDLEMLDR
QILEKKKQRTAQMECDKKFEEQEQLQKRLILAQEMELEKKQRVVDSDLNY
YRCRYQRKEQRREFDLNDPNFLKKARPTRVADNDISLGVSSAQIFQGEDL
YNSDRKQRQREQQRAWLDQQVQERKRAEDARKQADNVLMDNVGCRDKHLQ
EMAKSDHQMRNQVIQRVRQFNINMAKQKQLDREREKREKYEDDMAEIYNM
LSSDMLTENPDVAQSRTDPNKKIAFMYRGMTPEELRVFRLGQDQQLRLSI
QRKTEAQMMDKQWEQYSINMDRTLVLHQIEDDRRRKAEFDELMRANSKLA
VEQDRQRKEALVGLTNAVSDDFYDQFNKNSR*

RE41410.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25296-PA 381 GF25296-PA 1..381 1..381 1698 84.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15535-PA 381 GG15535-PA 1..381 1..381 1956 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14800-PA 381 GH14800-PA 1..381 1..381 1463 73.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-PB 381 CG7264-PB 1..381 1..381 1950 100 Plus
CG7264-PA 381 CG7264-PA 1..381 1..381 1950 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11854-PA 381 GI11854-PA 1..381 1..381 1436 75.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20726-PA 381 GL20726-PA 1..381 1..381 1578 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20221-PA 381 GA20221-PA 1..381 1..381 1585 78 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25302-PA 381 GM25302-PA 1..381 1..381 1983 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14334-PA 381 GD14334-PA 1..381 1..381 1974 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13552-PA 381 GJ13552-PA 1..381 1..381 1476 75.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12760-PA 381 GK12760-PA 1..381 1..381 1504 76.9 Plus
Dwil\GK25200-PA 381 GK25200-PA 1..381 1..381 1245 62.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21855-PA 381 GE21855-PA 1..381 1..381 1941 97.4 Plus

RE41410.hyp Sequence

Translation from 346 to 1491

> RE41410.hyp
MTLKIGICTKQDLDEAMKLQKREQYEDERKRRIFNAKQRLYGLDLEMLDR
QILEKKKQRTAQMECDKKFEEQEQLQKRLILAQEMELEKKQRVVDSDLNY
YRCRYQRKEQRREFDLNDPNFLKKARPTRVADNDISLGVSSAQIFQGEDL
YNSDRKQRQREQQRAWLDQQVQERKRAEDARKQADNVLMDNVGCRDKHLQ
EMAKSDHQMRNQVIQRVRQFNINMAKQKQLDREREKREKYEDDMAEIYNM
LSSDMLTENPDVAQSRTDPNKKIAFMYRGMTPEELRVFRLGQDQQLRLSI
QRKTEAQMMDKQWEQYSINMDRTLVLHQIEDDRRRKAEFDELMRANSKLA
VEQDRQRKEALVGLTNAVSDDFYDQFNKNSR*

RE41410.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-PB 381 CG7264-PB 1..381 1..381 1950 100 Plus
CG7264-PA 381 CG7264-PA 1..381 1..381 1950 100 Plus