Clone RE41427 Report

Search the DGRC for RE41427

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:414
Well:27
Vector:pFlc-1
Associated Gene/TranscriptCG17672-RA
Protein status:RE41427.pep: gold
Preliminary Size:600
Sequenced Size:1496

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11271 2003-02-13 Blastp of sequenced clone
CG17672 2008-04-29 Release 5.5 accounting
CG17672 2008-08-15 Release 5.9 accounting
CG17672 2008-12-18 5.12 accounting

Clone Sequence Records

RE41427.complete Sequence

1496 bp (1496 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003760

> RE41427.complete
AGTTCAGGTTGAGCGCTCGAGTTGGTCGGTTGTTGGACGCGCGTTACCTC
TACAAAGTGTTTCTGAAAATCCAGGCATCCAGTGAAATCAGCGTGTGATA
TTTTATTCGCTTCGTTTCGTGAAGTGTAGCAGAAGTGTAGTGAAAAGGCA
ATTCGAATCGGACAAGTCGCCGGCAGAAGACACGATATACGAGACGTTCG
ACAGAACATCTCAAGTGCCCCCCCTCAAGTACAGCCAATAAGCCAACAAT
CAACCAGCCATCCAACCATCCATACATCCATCCAACCAACCAACTAACCA
ACCAACAGGCAACACACGCAGCTACAAAATGGAATACCGGTGCTTAAGTA
GAAGTTCTGTCAAACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTC
ACCTGCGCAAACGCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCC
CCCCAGCCGCTGCAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATG
CGCTGACGGACTCGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCG
AGCGCGGCCGTGGCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACG
TGGCCGCCAGAGCAAATTGCCCAGCACACTGGACCCAGCCATAACCACCA
GTGCTCTGCTGAGGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGC
AGTCGCTATGGTCGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAA
GAGCGAGACGCCGGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGC
CCATGTACGGAGTGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAG
AAGTTCCCCGATCTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTC
TGAGTGCGATGTGGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACC
TGTTCCTGGTCATTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTAC
GTGCTGGTGGAGAGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGC
CGCCCAGGAGCCGAACATGATACCGTAGAAGGAGGAAACGAAGGAAGGCG
AAGGCGGTAACCACCAGGAACACCAACAGCAACCAAAAGAACTGAGCGAG
TTTTGGGTCGGAGCAGATCGGAGCCAAGCCGAGCTGGGCTGAACTGGCTG
GCTGGCTGGCTGGCTTAATTAAAAGGAATTATTTTTTGTAGCGAAATCAA
TTTTGCAATGTTATTTAATGTTTTCCCCCCATCTCTCATTCTCCTTTAAA
TCCCACTCAGCTTTATAAAATTGAATTGAAATTTTGCTCGAAAAATAATC
GAATCCTAATGTTAAGTCTAAATTTAAACAAAATTGATTAAATGCCTCTG
TGCGTTTGTAGTGTGTATTTATTAGAACCCCTAATTACGGCATTCGAAAA
TGCTAAATAAAAACATTCGTTTCGAAATGTGAAAAAAAAAAAAAAA

RE41427.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-RA 1606 CG17672-RA 123..1604 1..1482 7410 100 Plus
CG17672.a 1888 CG17672.a 406..1887 1..1482 7410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13026218..13026796 895..1481 2750 98.3 Plus
chr3L 24539361 chr3L 13019259..13019622 1..364 1790 99.5 Plus
chr3L 24539361 chr3L 13025337..13025524 365..552 940 100 Plus
chr3L 24539361 chr3L 13025889..13026073 710..894 910 99.5 Plus
chr3L 24539361 chr3L 13025598..13025759 551..712 810 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13035918..13036505 895..1482 2940 100 Plus
3L 28110227 3L 13028964..13029327 1..364 1820 100 Plus
3L 28110227 3L 13035032..13035219 365..552 940 100 Plus
3L 28110227 3L 13035584..13035768 710..894 925 100 Plus
3L 28110227 3L 13035293..13035454 551..712 810 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13029018..13029605 895..1482 2940 100 Plus
3L 28103327 3L 13022064..13022427 1..364 1820 100 Plus
3L 28103327 3L 13028132..13028319 365..552 940 100 Plus
3L 28103327 3L 13028684..13028868 710..894 925 100 Plus
3L 28103327 3L 13028393..13028554 551..712 810 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:30:14 has no hits.

RE41427.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:30:54 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13019259..13019504 1..246 100 == Plus
chr3L 13019565..13019622 307..364 100 -> Plus
chr3L 13025337..13025524 365..552 100 -> Plus
chr3L 13025600..13025757 553..710 100 -> Plus
chr3L 13025890..13026073 711..894 99 -> Plus
chr3L 13026218..13026796 895..1481 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:16:06 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..750 329..1078 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:52:08 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..750 329..1078 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:46:22 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..750 329..1078 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:15 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..750 329..1078 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:50 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..750 329..1078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:06:01 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..1414 1..1414 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:52:08 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..1414 1..1414 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:46:22 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 3..1483 1..1481 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:15 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..1414 1..1414 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:50 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 3..1483 1..1481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:54 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13028964..13029327 1..364 100 -> Plus
3L 13035032..13035219 365..552 100 -> Plus
3L 13035295..13035452 553..710 100 -> Plus
3L 13035585..13035768 711..894 100 -> Plus
3L 13035918..13036504 895..1481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:54 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13028964..13029327 1..364 100 -> Plus
3L 13035032..13035219 365..552 100 -> Plus
3L 13035295..13035452 553..710 100 -> Plus
3L 13035585..13035768 711..894 100 -> Plus
3L 13035918..13036504 895..1481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:30:54 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13028964..13029327 1..364 100 -> Plus
3L 13035032..13035219 365..552 100 -> Plus
3L 13035295..13035452 553..710 100 -> Plus
3L 13035585..13035768 711..894 100 -> Plus
3L 13035918..13036504 895..1481 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:46:22 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13028395..13028552 553..710 100 -> Plus
arm_3L 13028685..13028868 711..894 100 -> Plus
arm_3L 13022064..13022427 1..364 100 -> Plus
arm_3L 13028132..13028319 365..552 100 -> Plus
arm_3L 13029018..13029604 895..1481 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:14:03 Download gff for RE41427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13022064..13022427 1..364 100 -> Plus
3L 13028132..13028319 365..552 100 -> Plus
3L 13028395..13028552 553..710 100 -> Plus
3L 13028685..13028868 711..894 100 -> Plus
3L 13029018..13029604 895..1481 100   Plus

RE41427.pep Sequence

Translation from 328 to 1077

> RE41427.pep
MEYRCLSRSSVKHLTALCVLSIALTCANAALWPSYSSDDAPPSRCSGGRG
LKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSNWNGNSRRGRQSKLPST
LDPAITTSALLRAYDEVNNEAVGSSRYGRSLKNATPAQQCKSETPARLCK
TRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVRGEC
TQTYVPYLFLVIPLGPVTLTGQDYVLVESGCVCKPKYSTGAAQEPNMIP*

RE41427.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23508-PA 247 GF23508-PA 1..247 1..249 1254 96.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15621-PA 249 GG15621-PA 1..249 1..249 1310 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17141-PA 257 GH17141-PA 1..257 1..249 1187 91.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-PA 249 CG17672-PA 1..249 1..249 1314 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11750-PA 256 GI11750-PA 1..256 1..249 1246 93 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25327-PA 250 GL25327-PA 1..250 1..249 1257 94.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23760-PA 250 GA23760-PA 1..250 1..249 1257 94.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25392-PA 249 GM25392-PA 1..249 1..249 1312 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14424-PA 249 GD14424-PA 1..249 1..249 1312 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13459-PA 254 GJ13459-PA 1..254 1..249 1199 92.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17422-PA 257 GK17422-PA 8..257 12..249 1132 88.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21946-PA 249 GE21946-PA 1..249 1..249 1310 99.6 Plus

RE41427.hyp Sequence

Translation from 328 to 1077

> RE41427.hyp
MEYRCLSRSSVKHLTALCVLSIALTCANAALWPSYSSDDAPPSRCSGGRG
LKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSNWNGNSRRGRQSKLPST
LDPAITTSALLRAYDEVNNEAVGSSRYGRSLKNATPAQQCKSETPARLCK
TRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVRGEC
TQTYVPYLFLVIPLGPVTLTGQDYVLVESGCVCKPKYSTGAAQEPNMIP*

RE41427.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-PA 249 CG17672-PA 1..249 1..249 1314 100 Plus