BDGP Sequence Production Resources |
Search the DGRC for RE41427
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 414 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17672-RA |
Protein status: | RE41427.pep: gold |
Preliminary Size: | 600 |
Sequenced Size: | 1496 |
Gene | Date | Evidence |
---|---|---|
CG11271 | 2003-02-13 | Blastp of sequenced clone |
CG17672 | 2008-04-29 | Release 5.5 accounting |
CG17672 | 2008-08-15 | Release 5.9 accounting |
CG17672 | 2008-12-18 | 5.12 accounting |
1496 bp (1496 high quality bases) assembled on 2003-02-13
GenBank Submission: BT003760
> RE41427.complete AGTTCAGGTTGAGCGCTCGAGTTGGTCGGTTGTTGGACGCGCGTTACCTC TACAAAGTGTTTCTGAAAATCCAGGCATCCAGTGAAATCAGCGTGTGATA TTTTATTCGCTTCGTTTCGTGAAGTGTAGCAGAAGTGTAGTGAAAAGGCA ATTCGAATCGGACAAGTCGCCGGCAGAAGACACGATATACGAGACGTTCG ACAGAACATCTCAAGTGCCCCCCCTCAAGTACAGCCAATAAGCCAACAAT CAACCAGCCATCCAACCATCCATACATCCATCCAACCAACCAACTAACCA ACCAACAGGCAACACACGCAGCTACAAAATGGAATACCGGTGCTTAAGTA GAAGTTCTGTCAAACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTC ACCTGCGCAAACGCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCC CCCCAGCCGCTGCAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATG CGCTGACGGACTCGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCG AGCGCGGCCGTGGCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACG TGGCCGCCAGAGCAAATTGCCCAGCACACTGGACCCAGCCATAACCACCA GTGCTCTGCTGAGGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGC AGTCGCTATGGTCGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAA GAGCGAGACGCCGGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGC CCATGTACGGAGTGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAG AAGTTCCCCGATCTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTC TGAGTGCGATGTGGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACC TGTTCCTGGTCATTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTAC GTGCTGGTGGAGAGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGC CGCCCAGGAGCCGAACATGATACCGTAGAAGGAGGAAACGAAGGAAGGCG AAGGCGGTAACCACCAGGAACACCAACAGCAACCAAAAGAACTGAGCGAG TTTTGGGTCGGAGCAGATCGGAGCCAAGCCGAGCTGGGCTGAACTGGCTG GCTGGCTGGCTGGCTTAATTAAAAGGAATTATTTTTTGTAGCGAAATCAA TTTTGCAATGTTATTTAATGTTTTCCCCCCATCTCTCATTCTCCTTTAAA TCCCACTCAGCTTTATAAAATTGAATTGAAATTTTGCTCGAAAAATAATC GAATCCTAATGTTAAGTCTAAATTTAAACAAAATTGATTAAATGCCTCTG TGCGTTTGTAGTGTGTATTTATTAGAACCCCTAATTACGGCATTCGAAAA TGCTAAATAAAAACATTCGTTTCGAAATGTGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 13026218..13026796 | 895..1481 | 2750 | 98.3 | Plus |
chr3L | 24539361 | chr3L | 13019259..13019622 | 1..364 | 1790 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 13025337..13025524 | 365..552 | 940 | 100 | Plus |
chr3L | 24539361 | chr3L | 13025889..13026073 | 710..894 | 910 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 13025598..13025759 | 551..712 | 810 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 13035918..13036505 | 895..1482 | 2940 | 100 | Plus |
3L | 28110227 | 3L | 13028964..13029327 | 1..364 | 1820 | 100 | Plus |
3L | 28110227 | 3L | 13035032..13035219 | 365..552 | 940 | 100 | Plus |
3L | 28110227 | 3L | 13035584..13035768 | 710..894 | 925 | 100 | Plus |
3L | 28110227 | 3L | 13035293..13035454 | 551..712 | 810 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 13029018..13029605 | 895..1482 | 2940 | 100 | Plus |
3L | 28103327 | 3L | 13022064..13022427 | 1..364 | 1820 | 100 | Plus |
3L | 28103327 | 3L | 13028132..13028319 | 365..552 | 940 | 100 | Plus |
3L | 28103327 | 3L | 13028684..13028868 | 710..894 | 925 | 100 | Plus |
3L | 28103327 | 3L | 13028393..13028554 | 551..712 | 810 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 13019259..13019504 | 1..246 | 100 | == | Plus |
chr3L | 13019565..13019622 | 307..364 | 100 | -> | Plus |
chr3L | 13025337..13025524 | 365..552 | 100 | -> | Plus |
chr3L | 13025600..13025757 | 553..710 | 100 | -> | Plus |
chr3L | 13025890..13026073 | 711..894 | 99 | -> | Plus |
chr3L | 13026218..13026796 | 895..1481 | 95 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 1..750 | 329..1078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 1..750 | 329..1078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 1..750 | 329..1078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 1..750 | 329..1078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 1..750 | 329..1078 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 1..1414 | 1..1414 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 1..1414 | 1..1414 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 3..1483 | 1..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 1..1414 | 1..1414 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17672-RA | 3..1483 | 1..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13028964..13029327 | 1..364 | 100 | -> | Plus |
3L | 13035032..13035219 | 365..552 | 100 | -> | Plus |
3L | 13035295..13035452 | 553..710 | 100 | -> | Plus |
3L | 13035585..13035768 | 711..894 | 100 | -> | Plus |
3L | 13035918..13036504 | 895..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13028964..13029327 | 1..364 | 100 | -> | Plus |
3L | 13035032..13035219 | 365..552 | 100 | -> | Plus |
3L | 13035295..13035452 | 553..710 | 100 | -> | Plus |
3L | 13035585..13035768 | 711..894 | 100 | -> | Plus |
3L | 13035918..13036504 | 895..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13028964..13029327 | 1..364 | 100 | -> | Plus |
3L | 13035032..13035219 | 365..552 | 100 | -> | Plus |
3L | 13035295..13035452 | 553..710 | 100 | -> | Plus |
3L | 13035585..13035768 | 711..894 | 100 | -> | Plus |
3L | 13035918..13036504 | 895..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 13028395..13028552 | 553..710 | 100 | -> | Plus |
arm_3L | 13028685..13028868 | 711..894 | 100 | -> | Plus |
arm_3L | 13022064..13022427 | 1..364 | 100 | -> | Plus |
arm_3L | 13028132..13028319 | 365..552 | 100 | -> | Plus |
arm_3L | 13029018..13029604 | 895..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13022064..13022427 | 1..364 | 100 | -> | Plus |
3L | 13028132..13028319 | 365..552 | 100 | -> | Plus |
3L | 13028395..13028552 | 553..710 | 100 | -> | Plus |
3L | 13028685..13028868 | 711..894 | 100 | -> | Plus |
3L | 13029018..13029604 | 895..1481 | 100 | Plus |
Translation from 328 to 1077
> RE41427.pep MEYRCLSRSSVKHLTALCVLSIALTCANAALWPSYSSDDAPPSRCSGGRG LKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSNWNGNSRRGRQSKLPST LDPAITTSALLRAYDEVNNEAVGSSRYGRSLKNATPAQQCKSETPARLCK TRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVRGEC TQTYVPYLFLVIPLGPVTLTGQDYVLVESGCVCKPKYSTGAAQEPNMIP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23508-PA | 247 | GF23508-PA | 1..247 | 1..249 | 1254 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15621-PA | 249 | GG15621-PA | 1..249 | 1..249 | 1310 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17141-PA | 257 | GH17141-PA | 1..257 | 1..249 | 1187 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17672-PA | 249 | CG17672-PA | 1..249 | 1..249 | 1314 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11750-PA | 256 | GI11750-PA | 1..256 | 1..249 | 1246 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25327-PA | 250 | GL25327-PA | 1..250 | 1..249 | 1257 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23760-PA | 250 | GA23760-PA | 1..250 | 1..249 | 1257 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25392-PA | 249 | GM25392-PA | 1..249 | 1..249 | 1312 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14424-PA | 249 | GD14424-PA | 1..249 | 1..249 | 1312 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13459-PA | 254 | GJ13459-PA | 1..254 | 1..249 | 1199 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17422-PA | 257 | GK17422-PA | 8..257 | 12..249 | 1132 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21946-PA | 249 | GE21946-PA | 1..249 | 1..249 | 1310 | 99.6 | Plus |
Translation from 328 to 1077
> RE41427.hyp MEYRCLSRSSVKHLTALCVLSIALTCANAALWPSYSSDDAPPSRCSGGRG LKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSNWNGNSRRGRQSKLPST LDPAITTSALLRAYDEVNNEAVGSSRYGRSLKNATPAQQCKSETPARLCK TRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVRGEC TQTYVPYLFLVIPLGPVTLTGQDYVLVESGCVCKPKYSTGAAQEPNMIP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17672-PA | 249 | CG17672-PA | 1..249 | 1..249 | 1314 | 100 | Plus |