Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE41492.complete Sequence
620 bp (620 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071382
> RE41492.complete
ATCAGTTGCTTCTTGCTTGCCACCGAGATGAGCGCAATAAAGCCCGCCCT
GCTGCTCTGCCTGATCCTCACCATCGGTCTGTTCCTTGGTCAAGGTCGGG
CGAATCCCGTGGAGACGAATGTTCCCGATATTCCCGCACCCGATGCCAAC
GAACTGGGCATCGATTTCGGAGAGGAGGAAGATGCCACCGACAAGCCACT
GGGCATATTCACGATCAAGGTGCGCCACATTCAGCCGGACCCCGCCCACT
GCGCCCAGCTCTCGCCACATCACCCACACCACCCCCAGTGCCACAGCTAC
TGCAAACGCCAAGGTCACTGGGTGGGCCAGTGCAAGAAGGACATCTGTCA
GTGCTTTTCCTAGGTCTACTTCGACTGTAAGCCAAAACAGCGTTTTTTTT
TTTCTTTTGTTGAGTGCAGCACAACTATATGACGAAATATGTGCAAATAT
GTTTATCTACCAACTAGTATATATATTAAAACTGGCAATGAACAATGAAA
GCGAATCAAAATTGCTCAAATCATACACATAATATGTAGTCTTTGACCTT
CTAACATGCACTGAATAGAAAAAGCAGAACCTTAATAAATCTTCAAGTTA
AATTCAAAAAAAAAAAAAAA
RE41492.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34331-RB | 605 | CG34331-RB | 1..605 | 1..605 | 3025 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 20011031..20011635 | 1..605 | 2980 | 99.5 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:55:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20122457..20123063 | 1..607 | 3035 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 20130555..20131161 | 1..607 | 3035 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 21:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2445..2521 | 424..501 | 117 | 64.6 | Plus |
RE41492.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:12:44 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 20011031..20011635 | 1..605 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:16:10 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RA | 52..414 | 1..363 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:31 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RB | 1..336 | 28..363 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:35:06 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RB | 1..336 | 28..363 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:41 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RA | 52..414 | 1..363 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:11 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RB | 1..336 | 28..363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:43:12 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RA | 52..656 | 1..605 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:30 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RB | 1..605 | 1..605 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:06 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RB | 5..609 | 1..605 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:41 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RA | 52..656 | 1..605 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:11 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34331-RB | 5..609 | 1..605 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:12:44 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20122457..20123061 | 1..605 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:12:44 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20122457..20123061 | 1..605 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:12:44 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20122457..20123061 | 1..605 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:06 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20016490..20017094 | 1..605 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:12 Download gff for
RE41492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20130555..20131159 | 1..605 | 100 | | Plus |
RE41492.pep Sequence
Translation from 118 to 531
> RE41492.pep
MFPIFPHPMPTNWASISERRKMPPTSHWAYSRSRCATFSRTPPTAPSSRH
ITHTTPSATATANAKVTGWASARRTSVSAFPRSTSTVSQNSVFFFLLLSA
AQLYDEICANMFIYQLVYILKLAMNNESESKLLKSYT*
Sequence RE41492.pep has no blast hits.
RE41492.hyp Sequence
Translation from 118 to 531
> RE41492.hyp
MFPIFPHPMPTNWASISERRKMPPTSHWAYSRSRCATFSRTPPTAPSSRH
ITHTTPSATATANAKVTGWASARRTSVSAFPRSTSTVSQNSVFFFLLLSA
AQLYDEICANMFIYQLVYILKLAMNNESESKLLKSYT*
Sequence RE41492.hyp has no blast hits.