Clone RE41712 Report

Search the DGRC for RE41712

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:417
Well:12
Vector:pFlc-1
Associated Gene/TranscriptCG5292-RA
Protein status:RE41712.pep: gold
Preliminary Size:483
Sequenced Size:1203

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5292 2002-01-01 Sim4 clustering to Release 2
CG5292 2002-01-03 Blastp of sequenced clone
CG5292 2003-01-01 Sim4 clustering to Release 3
CG5292 2008-04-29 Release 5.5 accounting
CG5292 2008-08-15 Release 5.9 accounting
CG5292 2008-12-18 5.12 accounting

Clone Sequence Records

RE41712.complete Sequence

1203 bp (1203 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075489

> RE41712.complete
AAAGTGCCGCCTGAGTGAGAGCTACCCATTGTTTTTGTTGACCTGGTCAT
TTCATCTCATCTGTTTGCGGCTTTTCACCCAGTTCGCCCGAGTCTATTTC
CATGCCAAATGGCCGCCTTCATGGAGGAAGCGTTAGTGGAGGCGAGGCGG
GCACGTGACGCCGGCGAGGTGCCCGTGGGCTGTGTGTTCGTTCATGGGGA
CAAGGTGGTCGCACGTGGCGGGAACGAGGTGAACGTCCACCGGAACGCCA
CTCGCCACGCGGAATTCATTTGCATCGACGCTATCCTCGCCAGCTGCCGC
GAGAGACGTCTGCCGGCCCGCCAGCTGTTCAGCGAGATCACCGTGGTGGT
CACCGTGGAGCCCTGCATTATGTGCTCCGCCGCCCTGCACACTCTGGGCG
TCAAGGAGATCATCTACGGCTGTGAGAACGATCGTTTCGGAGGAAAGACG
GTCGTGGATGTGGCCGCCGTCGTTGGCCATAGGATCGAGATCACGGGCGG
TGTGCGGGCGGATGAGGCGATGGCTCTGCTAAAGGATTTCTACAAGGGCG
ACAATCCGGCGGCACCGCCACAGGCCAAGAAGAAAAAGTAGGATCAATTG
TCGAGGCCAAAAGCGTGCGTGAAGAAGGGGAGCATGAATGGAGTCAACCA
CTGATCCTCAAAGAAGTAGGAAGCTATTACAGTCATTGAAGTAATATTTA
AAGTATGATAAAACTATAGAAAAATAGTAGAATGCAAAAGTCTACGTTTT
CGTAAAATTCAATTACTTCCAAGCCTTCCAAAATCCGGAAACGAGCAGAT
TACCGAAAATCCGAAGGCAAGCCTCTAGTTTACTCATTATTTCAGAGGGA
ACAAGCCAAGAAACGTATTTATCTTATAAAAGGAATAGTATTCCGTCGAA
ATCATCGTGAAATAGAGAACGAATTTCAAAAACGCAATCAGAAATGAAAG
TAGTTAGAATACATAAAACTACAATCGCATAAAGAATGAAAACATTAGTG
CTCCAGTCATCTGCATCCTGGAGGCATACATCCGAAAGTAAAATAAGTAC
CACTGCATCATTCTTCGACGATTTCTGTATATGATTCAATTTATTATAAT
CTTTAAGCATAGTCTAAGATATATTGTATATGGCGTTCAGAACGTATGTT
TTAACTCTAAGCATAAATACAATTACTGCATGAAAAGAAAAAAAAAAAAA
AAA

RE41712.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-RA 1479 CG5292-RA 138..1322 1..1185 5910 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12976278..12976907 1..630 3090 99.4 Plus
chr3R 27901430 chr3R 12976962..12977518 629..1185 2740 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:56:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17151866..17152495 1..630 3150 100 Plus
3R 32079331 3R 17152550..17153106 629..1185 2770 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16892697..16893326 1..630 3150 100 Plus
3R 31820162 3R 16893381..16893937 629..1185 2770 99.8 Plus
Blast to na_te.dros performed on 2019-03-15 16:29:10 has no hits.

RE41712.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:30:12 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12976278..12976906 1..629 99 -> Plus
chr3R 12976963..12977519 630..1187 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:16:15 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..483 109..591 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:29 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..483 109..591 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:02:54 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..483 109..591 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:23 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..483 109..591 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:36 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..483 109..591 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:19 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..1186 1..1187 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:29 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..1186 1..1187 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:54 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 6..1191 1..1187 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:23 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..1186 1..1187 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:36 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 6..1191 1..1187 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:12 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17151866..17152494 1..629 100 -> Plus
3R 17152551..17153107 630..1187 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:12 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17151866..17152494 1..629 100 -> Plus
3R 17152551..17153107 630..1187 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:12 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17151866..17152494 1..629 100 -> Plus
3R 17152551..17153107 630..1187 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:54 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12977588..12978216 1..629 100 -> Plus
arm_3R 12978273..12978829 630..1187 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:54:55 Download gff for RE41712.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16892697..16893325 1..629 100 -> Plus
3R 16893382..16893938 630..1187 99   Plus

RE41712.hyp Sequence

Translation from 108 to 590

> RE41712.hyp
MAAFMEEALVEARRARDAGEVPVGCVFVHGDKVVARGGNEVNVHRNATRH
AEFICIDAILASCRERRLPARQLFSEITVVVTVEPCIMCSAALHTLGVKE
IIYGCENDRFGGKTVVDVAAVVGHRIEITGGVRADEAMALLKDFYKGDNP
AAPPQAKKKK*

RE41712.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-PB 160 CG5292-PB 1..160 1..160 825 100 Plus
CG5292-PA 160 CG5292-PA 1..160 1..160 825 100 Plus

RE41712.pep Sequence

Translation from 108 to 590

> RE41712.pep
MAAFMEEALVEARRARDAGEVPVGCVFVHGDKVVARGGNEVNVHRNATRH
AEFICIDAILASCRERRLPARQLFSEITVVVTVEPCIMCSAALHTLGVKE
IIYGCENDRFGGKTVVDVAAVVGHRIEITGGVRADEAMALLKDFYKGDNP
AAPPQAKKKK*

RE41712.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18139-PA 160 GF18139-PA 1..160 1..160 786 93.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22115-PA 160 GG22115-PA 1..160 1..160 817 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13454-PA 160 GH13454-PA 1..160 1..160 761 89.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-PB 160 CG5292-PB 1..160 1..160 825 100 Plus
CG5292-PA 160 CG5292-PA 1..160 1..160 825 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24773-PA 160 GI24773-PA 1..160 1..160 767 90.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23678-PA 160 GL23678-PA 1..160 1..160 726 86.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18791-PA 160 GA18791-PA 1..160 1..160 725 86.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15219-PA 160 GM15219-PA 1..160 1..160 813 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24425-PA 160 GJ24425-PA 1..160 1..160 764 90 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11635-PA 160 GK11635-PA 1..160 1..160 749 88.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10118-PA 160 GE10118-PA 1..160 1..160 811 97.5 Plus