Clone RE41733 Report

Search the DGRC for RE41733

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:417
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG17193-RA
Protein status:RE41733.pep: gold
Preliminary Size:234
Sequenced Size:3925

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17193 2002-01-01 Sim4 clustering to Release 2
CG17193 2002-02-26 Blastp of sequenced clone
CG17193 2003-01-01 Sim4 clustering to Release 3
CG17193 2008-04-29 Release 5.5 accounting
CG17193 2008-08-15 Release 5.9 accounting
CG17193 2008-12-18 5.12 accounting

Clone Sequence Records

RE41733.complete Sequence

3925 bp (3925 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089630

> RE41733.complete
AGTAGAAAAAACGCCGTCTGATGGAATAGATGTGCTAGTGACAGAGGGAA
CCGAACCGAACGGAGGTACCAAAAGGCGACATTCTCGACTCGTTTGGCGC
CATATTTACTAGGACCAATCGGAGTCGCCAGCTCTGTATTTGCGTGACTG
CGTGTGTGCGCGAGATAGTCCTGTTTTTTGGACCCCCCTTTGTTTGTGTA
ACTTCGCGCGCTTTTGTGTTTTATATACCAACGGGTCGGAAAATCGGGTA
CCAAAAAAAGGGATTTGAAAAGGCGTGAGATTTGCGGCCAGCTGCTGGAC
GACTGCCAGCGGACTGAAATCTTAATTAGCCATTTAATGGCAGTTGGCAC
ACAACAAAGCCCCATGCATTTGCAGCCGGAACTGTAGCCCATACAAAGCT
GATCAGCTTGAGTGTTTTATGGTGGCCCCAAAGTGGCAACTACAGCCTTA
ACATACAACTAACAAGCACAACATCGGCTTAGGGCAGCAGGAAGTATCAA
CACGAGCCAAGGAAACAAAGCAATCTATAAAGATGGCCGGCGGGGGCAGG
ACAGCCGGCAAATACGGATATTCGGACAACAATTATTACAGTGGTCACTC
GTACAAGAGCATCAACGATGAGATTATACTGGTCAGCATCATAATGGGCA
TCACCATACTGGTCCTCATCACCATCGCACTGTGCTACATTGCGTACGAG
AAGTGCCAGAAGAAGCGGGAGTACTATATCAACGCCTAGAGGTTGTCCCC
AAGGGAATTCGAGAACAACGGAATGATGCTTTCCTTCCCTTCGTCCTGTG
TTTTTGTTATCCTGTGCAGGGAGGAGGCGGTGCAAGGCCAAATGTCAACA
TGGTCGGCGACAATGTTGACGTTGACGATTTAGTTGGCCAACAAAAATAA
CCCAGAGTGGCTGCGCCCAACTGCCGGCTTGCGTTTTTTCTCCTTGCAAC
CCCAACCCAACTTGCAACCCGAATACCCGGCAGACACGTACCCAAATCGG
AAACCAGTGGCATTTTTGTGCTGCTTAAACGTTTCGCCATCTCCGTTGGC
TTTGCCACAGTTGCAGTTTCTCGAGTGCCGGGAAACATGGCTCCTTTGTT
CGGATTGTTTGCCCACTGTGCACAGTGGGTGCCAGCACTCGCCACTTGCC
ACTTGACATTTGACCAGCCAATTAGGCGTTTTCTATTTTCCCATTTTGTA
TTTTCTTTGCTGCAGTCTCGTTGCGAAAACATGGACACAACTGTAATGGC
ATAGCACTTTTTAAATTCTCCTGCTGCTGAAGGAAGAGGAGACTTTTTAA
GACATTCATAAATTCGAGTTTTTATGCCGCATCCAGGCATTTCAATTTAA
AATGCAATTCACTCGAATTCCACCATGCAGCAACCTTTTGTTTGTCAAAC
CGAGCTGGAATAATAAAAAAAAGCAACCTCACACCACGGAATAATGGCAG
CGAAAGAAATATAAGCGATACTCTTGCAGTGCGCTCCGTCGATATGGTTG
CCCCGAACTGAATGCTGGATACATTGTGCATATGTGCACTGAGAGAAAAG
TGTGATGATATCATTCAAAATCACAAATAAACGACACTTCTCATGGGTCG
TAATTTTTAACCAACAAAAGCTTTATTTAAGAATAATTATAACAATAGCA
ACCATTATTGATGATGCATAATCCAAAAATGGATCAAGTTCCATCAATTT
CCAAATCGGAATTTCATATGAAATTCATATGAACAATGAATACAAAACCA
ACGATACTAAAACATGAAACACCTAAAAATATATATACTAACACGTTTTA
TGATTTCTTATATTAATTATGTTTTATATTTCATTTAAACCACTTTTTTT
TCAGATATATATTTTTTTTTATTTTTTCATAACATAGTTTTTTTTAGTGA
TTTCAAGATTTTTATTATTCTTATAGTTTTTAATAACTCCAATTTATGGC
AGACTGTGTGCTCTGTGTGGTCTTACACACATTCCAATTTCGAGTATTGA
CAGCGCGGGAGCATTTAACTATCCAATGGAGAGGGGAAAAGAAACCCACC
AGCTAGTGAGTGACTTTTCTTATATCCTTTTTGGTTCGTCTTTTTCCCTG
ATGCTCTGTGGGATCTGCTTTTTTTTGGGATTGGGTTCAAGACCGTGTCC
CGAGGCCGTGATAATAAAAACAGTAGCGGAAACTGGGTGCAGTGCACGCG
AACAAAGCGTTGAGGAACAATAAGGGAAATCGCCCAGCGATTTCGTGGTA
GCAAAGCGATTCCAAGGGAAATAGGCAGAAGATAAAGGCCAGAAAGAGTT
GGCATTAAACTAGAGCAAAATGAAGCACATTTAAAGGCCTCTAACGGCAA
ACGTAGCTGTGGGCATAAATTAAAGCTCTTGTCAGGCGAAAGGCTCCACA
GAAATAACCATCTCACATCCTGAAATCGACAAAAAAACCAACACACATCC
GCCTTTTGCCAATGTGTCGGGAACTCATGGTTAATCAGCTTAGACAACCT
CCGTCATCGGGTTCGAGGCATTTTGTTGTTTTGCCTGCTTTTTTGGGCAC
ATCAAGAGGCCTAAGAGCAAACAAATAACTCGAGTTCGGTGGCCAAGGGG
GCTTTTTTCCCTGGAAATGCTTTTAAAAATTAAACAACTGATAAATGACA
AAGTTCGTTGGACCAGAAATTATCGTTTGACAAATTGGCAGGCCCCGATG
AGAGCTCATCTATTGCCTGGCAACCACGTGGTGAGCAAGTCCTTTTAAGA
TCCTGCAGATGAAGAGCACTTACGGCGGAGCCAGACGAATTACTAGTGAC
CAAATGGTTCTATTGACTTGGAAAATTAACTAAGAGAAGATTTTGCGTTG
AAGGATTTACGATGAAGGACTTAAAGTAAGGTCGCGAATATTTTCTTTGT
TCTCTGTCCTATATGATTTCTTTTATGGCTTTATTATATTTTCCAAGATG
TTTTTTGTTCACTTGCGCTGGTATTCAAGTTTCTTTAACCTCTTTTATTG
TTACGCTCTGCAACACAAAACTTTGACCACAAACCCGTACACAAAAGTTA
ACTTGACACTCAACCACCGAAATGTAGTTAAATAGTGCATCATCAAAAAA
ATAGACAAGGATTCAGAGTACGGTAAGGAAAAGGACTTTACTAATTATCC
GTTAAGCAGGAAAAATGCCAGCAGAAAAATCCAAACACGCTCAAAGAGCA
ACAATAAATTTTACGACGGCCATAATAAAAAAAGATTGGAGCACAAATTT
TAGCACTTGTCGTGTGTCTGAGTCAGGAAAAATAGAGTTTCGCAAGGACT
CGCCACTCAAAATGCATCCTTATCCTTTAAGGGAAACTCACTTTCCCTGC
GTGCGAAGAGAATGACTCGTTGCTTTTTAAGCGGACCCATATAGTATACA
TATAAAGCCACCCCAAAAAGAATCCTCCCATGGCACACGTAGCAAACTTT
ACGTCCACTTTTATAGTTTTTTTATGTAGCGCTGTCCCACTAATTGCCAC
ATGACTTGGCCAAAGATGACAGGACGCTGCAGGACGAAAGGAAATTAATG
AAATTACTTTAGTGTCGCCGGAAGGAGGGGGCGTATTGCGTATTGTATAT
GCATTTATCCAATTGCACTTCGATCGTAGCATATAGATATCTATGTAACC
ATGATAGATGTGACCACTTATACCTAGTAAATTATTGAATTTGTGGCCAA
CTCGAGGCAGTGCATCCTTTTTGTCATGAAAAGGGGGACCAAACGTACAA
TGAAACAAAGAATTCAATACGAAAAACATGTACTTTATTTTAACTAATTA
AATCGAACTAAGTGAGATCTATAAATGTTGATAGTAGAAATTGTTAAAAC
TATATTCGAAATACTTTATGTACAATAAATACAATAAAGAAATGTTTATG
CATGTTACCAAAAAAAAAAAAAAAA

RE41733.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17193-RB 3908 CG17193-RB 1..3908 1..3908 19510 99.9 Plus
CG17193-RA 3940 CG17193-RA 20..3937 1..3912 19430 99.7 Plus
CG12994-RA 1183 CG12994-RA 514..634 609..726 250 81.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15860354..15863670 3908..593 16475 99.8 Minus
chr3R 27901430 chr3R 15879670..15880036 366..1 1680 98.4 Minus
chr3R 27901430 chr3R 15873600..15873829 595..366 1150 100 Minus
chrX 22417052 chrX 17312265..17312369 713..609 240 81.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:56:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20036417..20039736 3912..593 16555 99.9 Minus
3R 32079331 3R 20055728..20056093 366..1 1830 100 Minus
3R 32079331 3R 20049647..20049876 595..366 1150 100 Minus
X 23542271 X 17422885..17422989 713..609 240 81.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19777248..19780567 3912..593 16555 99.9 Minus
3R 31820162 3R 19796559..19796924 366..1 1830 100 Minus
3R 31820162 3R 19790478..19790707 595..366 1150 100 Minus
X 23527363 X 17430967..17431087 726..609 250 81.8 Minus
Blast to na_te.dros performed 2019-03-15 16:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 7045..7206 1938..1783 176 61.4 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6758..6967 1934..1724 162 57.1 Minus
Tirant 8526 Tirant TIRANT 8526bp 7034..7443 1544..1946 152 53.7 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 908..1045 3759..3892 149 59.7 Plus
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 2610..2686 2987..3063 142 64.9 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 5082..5193 1902..1795 134 63.7 Minus
Tc3 1743 Tc3 TC3 1743bp 225..432 1770..1968 125 56.7 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4729..4846 1909..1795 123 62 Minus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 691..790 3790..3892 121 59.2 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 5380..5452 1778..1849 119 64.4 Plus

RE41733.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:30:14 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15860353..15863669 594..3909 99 <- Minus
chr3R 15873602..15873828 367..593 100 <- Minus
chr3R 15879670..15880036 1..366 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:33:08 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RA 1..207 533..739 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:35:05 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RB 1..207 533..739 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:02:59 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RA 1..207 533..739 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:56 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RA 1..207 533..739 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:42 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RA 1..207 533..739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:33:07 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RA 1..3914 1..3909 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:35:05 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RB 1..3908 1..3908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:59 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RB 1..3908 1..3908 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:56 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RA 1..3914 1..3909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:42 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
CG17193-RB 5..3915 1..3908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:14 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20036420..20039735 594..3909 99 <- Minus
3R 20049649..20049875 367..593 100 <- Minus
3R 20055728..20056093 1..366 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:14 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20036420..20039735 594..3909 99 <- Minus
3R 20049649..20049875 367..593 100 <- Minus
3R 20055728..20056093 1..366 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:14 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20036420..20039735 594..3909 99 <- Minus
3R 20049649..20049875 367..593 100 <- Minus
3R 20055728..20056093 1..366 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:59 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15862142..15865457 594..3909 99 <- Minus
arm_3R 15875371..15875597 367..593 100 <- Minus
arm_3R 15881450..15881815 1..366 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:49 Download gff for RE41733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19777251..19780566 594..3909 99 <- Minus
3R 19790480..19790706 367..593 100 <- Minus
3R 19796559..19796924 1..366 100   Minus

RE41733.pep Sequence

Translation from 532 to 738

> RE41733.pep
MAGGGRTAGKYGYSDNNYYSGHSYKSINDEIILVSIIMGITILVLITIAL
CYIAYEKCQKKREYYINA*

RE41733.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17337-PA 68 GF17337-PA 1..68 1..68 340 100 Plus
Dana\GF22614-PA 67 GF22614-PA 4..67 5..68 206 69.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15630-PA 68 GG15630-PA 1..68 1..68 340 100 Plus
Dere\GG18183-PA 67 GG18183-PA 4..67 5..68 208 69.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23219-PA 68 GH23219-PA 1..68 1..68 328 95.6 Plus
Dgri\GH24069-PA 67 GH24069-PA 4..67 5..68 206 69.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17193-PC 68 CG17193-PC 1..68 1..68 355 100 Plus
CG17193-PB 68 CG17193-PB 1..68 1..68 355 100 Plus
CG17193-PA 68 CG17193-PA 1..68 1..68 355 100 Plus
CG12994-PA 67 CG12994-PA 4..67 5..68 216 69.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10313-PA 68 GI10313-PA 1..68 1..68 325 94.1 Plus
Dmoj\GI14648-PA 67 GI14648-PA 4..67 5..68 206 69.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12517-PA 68 GL12517-PA 1..68 1..68 330 97.1 Plus
Dper\GL19830-PA 67 GL19830-PA 4..67 5..68 206 69.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14379-PA 68 GA14379-PA 1..68 1..68 330 97.1 Plus
Dpse\GA11962-PA 67 GA11962-PA 4..67 5..68 206 69.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17696-PA 68 GM17696-PA 1..68 1..68 340 100 Plus
Dsec\GM13315-PA 67 GM13315-PA 4..67 5..68 208 69.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20082-PA 68 GD20082-PA 1..68 1..68 340 100 Plus
Dsim\GD17359-PA 67 GD17359-PA 4..67 5..68 208 69.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10167-PA 68 GJ10167-PA 1..68 1..68 328 95.6 Plus
Dvir\GJ19297-PA 67 GJ19297-PA 4..67 5..68 206 69.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22794-PA 68 GK22794-PA 1..68 1..68 335 98.5 Plus
Dwil\GK19922-PA 147 GK19922-PA 4..60 5..62 169 63.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25089-PA 68 GE25089-PA 1..68 1..68 340 100 Plus
Dyak\GE15593-PA 67 GE15593-PA 4..67 5..68 208 69.2 Plus

RE41733.hyp Sequence

Translation from 532 to 738

> RE41733.hyp
MAGGGRTAGKYGYSDNNYYSGHSYKSINDEIILVSIIMGITILVLITIAL
CYIAYEKCQKKREYYINA*

RE41733.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17193-PC 68 CG17193-PC 1..68 1..68 355 100 Plus
CG17193-PB 68 CG17193-PB 1..68 1..68 355 100 Plus
CG17193-PA 68 CG17193-PA 1..68 1..68 355 100 Plus
CG12994-PA 67 CG12994-PA 4..67 5..68 216 69.2 Plus