Clone RE42071 Report

Search the DGRC for RE42071

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:420
Well:71
Vector:pFlc-1
Associated Gene/TranscriptCG7638-RA
Protein status:RE42071.pep: gold
Preliminary Size:1625
Sequenced Size:1905

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7638 2002-01-01 Sim4 clustering to Release 2
CG7638 2002-05-30 Blastp of sequenced clone
CG7638 2003-01-01 Sim4 clustering to Release 3
CG7638 2008-04-29 Release 5.5 accounting
CG7638 2008-08-15 Release 5.9 accounting
CG7638 2008-12-18 5.12 accounting

Clone Sequence Records

RE42071.complete Sequence

1905 bp (1905 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118392

> RE42071.complete
GTCGCACTGCCCGCACAAAAGAAAATTTTCAACGAAAATTGTTCGAGATT
TCCGTTTTTAATTAACAATGATGAATTAATTAACGCTGGAATTAGCACAA
GCTGTAACTTCACACATTTTCTCGGCTCCACGGCAATAGAAAGCGATGGC
TGTGCTGGGCGCCCAATTGGTCATCACCTTGGTGATGGTCAGCGTTATCC
AGAAGTTGAGTCCACACTACTCCTTCGCCAAGTGGATTCTGTGCCGCACC
GGACTCTATCGATACCTGCATCCCACGGACGATGAGCTGCGGTCCCGCGG
CGGTGTGCCCAAGGAGAAGCCACCAAAAGGTGGTCGAAATAAGCAGGCAA
ATGGTTCAGGAGGAGCGGCGGGTGCACAATTCCACATACCGCGCAGCATT
GAGGTGGAGCTGTTGACGTCACCGGTGTTGGAACGGGATGTTGTCCACCT
GCGCTACTTCACCGAATATCAATGGCTGCTGGACTTCAGTGTCTACACGG
GGATCGTCTACGTGGTCTCCGAGCTGTTCCACTTCTACTACCCGCTGCGC
CACGAGGTCAACTTGAGCATGGTGTGGTGCCTGCTGGTCATCTTCTTTGC
CCTGAAGCTGCTGTCCTCGCTTACGGTGCTCTACTTCCAGAGCGAGGAGT
CCATCGGCGAGAGGTCGATGGTGATTGTTGCCTGTTTGGTTTACCTGCTG
GTGGCCATGGTCGTGCTGATCGTTGACGAGCGCATTCTGGAGACGGGACT
GGAGGATGCCTATGCGAGCTTTAATGCCAGCGCTTCCAAGTTCCTCACCG
AGCAGGGCCTGCCATCATCTGGTCCCGCCTCCAAGATCGTGGTCAAGTTC
TTTTTGGCCATGGGTTGCGGCCTGCTCGGCTCATTGTTCACCTTCCCCGG
CTTGCGGATGGCCAAGATGCACTGGGATTCGTTGAAGTACTGTCGCGGCA
ACCGGTTGCTGCAAGTGCTCCTGAATCTCAGCTTTGTGCTGCCCTTTATT
CTGGTCATCCTGTGGATTCGGCCCATTAGCCGCGATTACCTGACGGTGCG
CGTCTTCCAAGGAATGCAACAGCCACTACTGAAGCCACACGTTTTTGAGA
CACTTCGCCTGCTGCTAGTGATCTTTGTGGTGGTGGTTCGTTTCGCCTTG
ATGCCCATATATCTGCAATCGTACCTGAATCTGGCCCACGACAAGATCAT
GGATCTGCGCAAGGAGGCCGGTCGGATCACCAACGTAGAGTTCAAGCAGA
AGATCTCGTCTATTTTCTACTATCTATGTGTTGTGACGCTGCAATTTGCT
GCCCCACTGATCCTATGCCTTTATCTCACACTTATGTACAAAAGTCTGGG
CGGCTTTAGCTGGTCGGGTATTTTCCGCGAGAGCGTTGTCCTGCAGCACG
AGTGTGCGGCTAGCGAAACGGAAGGAGCTGGTGTTGCCGTTTCCCAAGGA
GATGGTGACTTTAATATTATTGAGTCGGCGCAATCGCTGCAGGCTTCGTT
TAGCAGCCTGAAAAACGTTTTCTCCACGGAGGTGTACAAGGGTTTCCTGG
GCTTTGCCACCTGGTGGAGCTACTTCACCCTATTCGCCACTTCATCGCTG
GGCATTGTCTACCAATCATATTTCAACAAGACCTAGGTTCATTTAAATCC
CCGTCGTAGTATATGACTTTGTTCTTTTGTAGTGAATTTATACCGCACAC
GAAATTAATATTAGTTTCTACTCATGTGGCGAGTATCTTGATTTACAATA
TTTTTTGTAAATAATACTACCTAACTCATTGTTTATAAAGTGTGTTTTAA
AGACTTTTAACCAGGCTGCCCGGAGAGTAACCAAAGTAATTACAAAAATA
AATAAATAATCTAAAACGGAGATATGTTATCAAAACACGAAAAAAAAAAA
AAAAA

RE42071.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7638-RA 2009 CG7638-RA 65..1955 1..1891 9425 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11102620..11102990 1517..1887 1840 99.7 Plus
chr3L 24539361 chr3L 11100904..11101279 148..523 1835 99.2 Plus
chr3L 24539361 chr3L 11101378..11101675 522..819 1370 97.3 Plus
chr3L 24539361 chr3L 11102298..11102565 1251..1518 1340 100 Plus
chr3L 24539361 chr3L 11101737..11101994 820..1077 1230 98.4 Plus
chr3L 24539361 chr3L 11102063..11102237 1078..1252 860 99.4 Plus
chr3L 24539361 chr3L 11100567..11100715 1..149 730 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:56:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11110029..11110404 148..523 1880 100 Plus
3L 28110227 3L 11111745..11112119 1517..1891 1860 99.7 Plus
3L 28110227 3L 11110503..11110800 522..819 1490 100 Plus
3L 28110227 3L 11111423..11111690 1251..1518 1340 100 Plus
3L 28110227 3L 11110862..11111119 820..1077 1290 100 Plus
3L 28110227 3L 11111188..11111362 1078..1252 875 100 Plus
3L 28110227 3L 11109692..11109840 1..149 730 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11103129..11103504 148..523 1880 100 Plus
3L 28103327 3L 11104845..11105219 1517..1891 1860 99.7 Plus
3L 28103327 3L 11103603..11103900 522..819 1490 100 Plus
3L 28103327 3L 11104523..11104790 1251..1518 1340 100 Plus
3L 28103327 3L 11103962..11104219 820..1077 1290 100 Plus
3L 28103327 3L 11104288..11104462 1078..1252 875 100 Plus
3L 28103327 3L 11102792..11102940 1..149 730 99.3 Plus
Blast to na_te.dros performed 2019-03-16 03:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 1038..1076 1838..1876 114 76.9 Plus

RE42071.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:34:06 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11100567..11100714 1..148 99 -> Plus
chr3L 11100905..11101279 149..523 99 -> Plus
chr3L 11101380..11101675 524..819 97 -> Plus
chr3L 11101737..11101994 820..1077 98 -> Plus
chr3L 11102063..11102237 1078..1252 99 -> Plus
chr3L 11102300..11102563 1253..1516 100 -> Plus
chr3L 11102620..11102992 1517..1889 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:16:24 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 1..1491 146..1636 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:06 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 1..1491 146..1636 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:46:33 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 1..1491 146..1636 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:40 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 1..1491 146..1636 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:08:25 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 1..1491 146..1636 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:07:58 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 31..1919 1..1889 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:06 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 31..1919 1..1889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:46:33 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 3..1891 1..1889 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:40 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 1..1889 1..1889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:08:25 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
CG7638-RA 3..1891 1..1889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:34:06 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11110505..11110800 524..819 100 -> Plus
3L 11109692..11109839 1..148 99 -> Plus
3L 11110030..11110404 149..523 100 -> Plus
3L 11110862..11111119 820..1077 100 -> Plus
3L 11111188..11111362 1078..1252 100 -> Plus
3L 11111425..11111688 1253..1516 100 -> Plus
3L 11111745..11112117 1517..1889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:34:06 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11110505..11110800 524..819 100 -> Plus
3L 11109692..11109839 1..148 99 -> Plus
3L 11110030..11110404 149..523 100 -> Plus
3L 11110862..11111119 820..1077 100 -> Plus
3L 11111188..11111362 1078..1252 100 -> Plus
3L 11111425..11111688 1253..1516 100 -> Plus
3L 11111745..11112117 1517..1889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:34:06 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11110505..11110800 524..819 100 -> Plus
3L 11109692..11109839 1..148 99 -> Plus
3L 11110030..11110404 149..523 100 -> Plus
3L 11110862..11111119 820..1077 100 -> Plus
3L 11111188..11111362 1078..1252 100 -> Plus
3L 11111425..11111688 1253..1516 100 -> Plus
3L 11111745..11112117 1517..1889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:46:33 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11104845..11105217 1517..1889 99   Plus
arm_3L 11102792..11102939 1..148 99 -> Plus
arm_3L 11103130..11103504 149..523 100 -> Plus
arm_3L 11103605..11103900 524..819 100 -> Plus
arm_3L 11103962..11104219 820..1077 100 -> Plus
arm_3L 11104288..11104462 1078..1252 100 -> Plus
arm_3L 11104525..11104788 1253..1516 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:12 Download gff for RE42071.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11104845..11105217 1517..1889 99   Plus
3L 11103130..11103504 149..523 100 -> Plus
3L 11103605..11103900 524..819 100 -> Plus
3L 11103962..11104219 820..1077 100 -> Plus
3L 11104288..11104462 1078..1252 100 -> Plus
3L 11104525..11104788 1253..1516 100 -> Plus
3L 11102792..11102939 1..148 99 -> Plus

RE42071.hyp Sequence

Translation from 145 to 1635

> RE42071.hyp
MAVLGAQLVITLVMVSVIQKLSPHYSFAKWILCRTGLYRYLHPTDDELRS
RGGVPKEKPPKGGRNKQANGSGGAAGAQFHIPRSIEVELLTSPVLERDVV
HLRYFTEYQWLLDFSVYTGIVYVVSELFHFYYPLRHEVNLSMVWCLLVIF
FALKLLSSLTVLYFQSEESIGERSMVIVACLVYLLVAMVVLIVDERILET
GLEDAYASFNASASKFLTEQGLPSSGPASKIVVKFFLAMGCGLLGSLFTF
PGLRMAKMHWDSLKYCRGNRLLQVLLNLSFVLPFILVILWIRPISRDYLT
VRVFQGMQQPLLKPHVFETLRLLLVIFVVVVRFALMPIYLQSYLNLAHDK
IMDLRKEAGRITNVEFKQKISSIFYYLCVVTLQFAAPLILCLYLTLMYKS
LGGFSWSGIFRESVVLQHECAASETEGAGVAVSQGDGDFNIIESAQSLQA
SFSSLKNVFSTEVYKGFLGFATWWSYFTLFATSSLGIVYQSYFNKT*

RE42071.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7638-PA 496 CG7638-PA 1..496 1..496 2540 100 Plus

RE42071.pep Sequence

Translation from 145 to 1635

> RE42071.pep
MAVLGAQLVITLVMVSVIQKLSPHYSFAKWILCRTGLYRYLHPTDDELRS
RGGVPKEKPPKGGRNKQANGSGGAAGAQFHIPRSIEVELLTSPVLERDVV
HLRYFTEYQWLLDFSVYTGIVYVVSELFHFYYPLRHEVNLSMVWCLLVIF
FALKLLSSLTVLYFQSEESIGERSMVIVACLVYLLVAMVVLIVDERILET
GLEDAYASFNASASKFLTEQGLPSSGPASKIVVKFFLAMGCGLLGSLFTF
PGLRMAKMHWDSLKYCRGNRLLQVLLNLSFVLPFILVILWIRPISRDYLT
VRVFQGMQQPLLKPHVFETLRLLLVIFVVVVRFALMPIYLQSYLNLAHDK
IMDLRKEAGRITNVEFKQKISSIFYYLCVVTLQFAAPLILCLYLTLMYKS
LGGFSWSGIFRESVVLQHECAASETEGAGVAVSQGDGDFNIIESAQSLQA
SFSSLKNVFSTEVYKGFLGFATWWSYFTLFATSSLGIVYQSYFNKT*

RE42071.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25243-PA 495 GF25243-PA 1..495 1..496 2395 93.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15480-PA 495 GG15480-PA 1..495 1..496 2574 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16926-PA 497 GH16926-PA 1..497 1..496 2178 84.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7638-PA 496 CG7638-PA 1..496 1..496 2540 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13681-PA 490 GI13681-PA 1..490 1..496 2259 85.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22761-PA 492 GL22761-PA 1..492 1..496 2282 88.6 Plus
Dper\GL25720-PA 103 GL25720-PA 1..46 142..187 209 93.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20498-PA 492 GA20498-PA 1..492 1..496 2280 88.6 Plus
Dpse\GA28148-PA 159 GA28148-PA 1..144 1..187 623 69 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25251-PA 494 GM25251-PA 1..494 1..496 2564 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14285-PA 494 GD14285-PA 1..494 1..496 2574 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14021-PA 491 GJ14021-PA 1..491 1..496 2204 85.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20335-PA 495 GK20335-PA 1..495 1..496 2266 86.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21790-PA 493 GE21790-PA 1..493 1..496 2535 97.4 Plus