BDGP Sequence Production Resources |
Search the DGRC for RE42071
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 420 |
Well: | 71 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG7638-RA |
Protein status: | RE42071.pep: gold |
Preliminary Size: | 1625 |
Sequenced Size: | 1905 |
Gene | Date | Evidence |
---|---|---|
CG7638 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7638 | 2002-05-30 | Blastp of sequenced clone |
CG7638 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7638 | 2008-04-29 | Release 5.5 accounting |
CG7638 | 2008-08-15 | Release 5.9 accounting |
CG7638 | 2008-12-18 | 5.12 accounting |
1905 bp (1905 high quality bases) assembled on 2002-05-30
GenBank Submission: AY118392
> RE42071.complete GTCGCACTGCCCGCACAAAAGAAAATTTTCAACGAAAATTGTTCGAGATT TCCGTTTTTAATTAACAATGATGAATTAATTAACGCTGGAATTAGCACAA GCTGTAACTTCACACATTTTCTCGGCTCCACGGCAATAGAAAGCGATGGC TGTGCTGGGCGCCCAATTGGTCATCACCTTGGTGATGGTCAGCGTTATCC AGAAGTTGAGTCCACACTACTCCTTCGCCAAGTGGATTCTGTGCCGCACC GGACTCTATCGATACCTGCATCCCACGGACGATGAGCTGCGGTCCCGCGG CGGTGTGCCCAAGGAGAAGCCACCAAAAGGTGGTCGAAATAAGCAGGCAA ATGGTTCAGGAGGAGCGGCGGGTGCACAATTCCACATACCGCGCAGCATT GAGGTGGAGCTGTTGACGTCACCGGTGTTGGAACGGGATGTTGTCCACCT GCGCTACTTCACCGAATATCAATGGCTGCTGGACTTCAGTGTCTACACGG GGATCGTCTACGTGGTCTCCGAGCTGTTCCACTTCTACTACCCGCTGCGC CACGAGGTCAACTTGAGCATGGTGTGGTGCCTGCTGGTCATCTTCTTTGC CCTGAAGCTGCTGTCCTCGCTTACGGTGCTCTACTTCCAGAGCGAGGAGT CCATCGGCGAGAGGTCGATGGTGATTGTTGCCTGTTTGGTTTACCTGCTG GTGGCCATGGTCGTGCTGATCGTTGACGAGCGCATTCTGGAGACGGGACT GGAGGATGCCTATGCGAGCTTTAATGCCAGCGCTTCCAAGTTCCTCACCG AGCAGGGCCTGCCATCATCTGGTCCCGCCTCCAAGATCGTGGTCAAGTTC TTTTTGGCCATGGGTTGCGGCCTGCTCGGCTCATTGTTCACCTTCCCCGG CTTGCGGATGGCCAAGATGCACTGGGATTCGTTGAAGTACTGTCGCGGCA ACCGGTTGCTGCAAGTGCTCCTGAATCTCAGCTTTGTGCTGCCCTTTATT CTGGTCATCCTGTGGATTCGGCCCATTAGCCGCGATTACCTGACGGTGCG CGTCTTCCAAGGAATGCAACAGCCACTACTGAAGCCACACGTTTTTGAGA CACTTCGCCTGCTGCTAGTGATCTTTGTGGTGGTGGTTCGTTTCGCCTTG ATGCCCATATATCTGCAATCGTACCTGAATCTGGCCCACGACAAGATCAT GGATCTGCGCAAGGAGGCCGGTCGGATCACCAACGTAGAGTTCAAGCAGA AGATCTCGTCTATTTTCTACTATCTATGTGTTGTGACGCTGCAATTTGCT GCCCCACTGATCCTATGCCTTTATCTCACACTTATGTACAAAAGTCTGGG CGGCTTTAGCTGGTCGGGTATTTTCCGCGAGAGCGTTGTCCTGCAGCACG AGTGTGCGGCTAGCGAAACGGAAGGAGCTGGTGTTGCCGTTTCCCAAGGA GATGGTGACTTTAATATTATTGAGTCGGCGCAATCGCTGCAGGCTTCGTT TAGCAGCCTGAAAAACGTTTTCTCCACGGAGGTGTACAAGGGTTTCCTGG GCTTTGCCACCTGGTGGAGCTACTTCACCCTATTCGCCACTTCATCGCTG GGCATTGTCTACCAATCATATTTCAACAAGACCTAGGTTCATTTAAATCC CCGTCGTAGTATATGACTTTGTTCTTTTGTAGTGAATTTATACCGCACAC GAAATTAATATTAGTTTCTACTCATGTGGCGAGTATCTTGATTTACAATA TTTTTTGTAAATAATACTACCTAACTCATTGTTTATAAAGTGTGTTTTAA AGACTTTTAACCAGGCTGCCCGGAGAGTAACCAAAGTAATTACAAAAATA AATAAATAATCTAAAACGGAGATATGTTATCAAAACACGAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7638-RA | 2009 | CG7638-RA | 65..1955 | 1..1891 | 9425 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 11102620..11102990 | 1517..1887 | 1840 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 11100904..11101279 | 148..523 | 1835 | 99.2 | Plus |
chr3L | 24539361 | chr3L | 11101378..11101675 | 522..819 | 1370 | 97.3 | Plus |
chr3L | 24539361 | chr3L | 11102298..11102565 | 1251..1518 | 1340 | 100 | Plus |
chr3L | 24539361 | chr3L | 11101737..11101994 | 820..1077 | 1230 | 98.4 | Plus |
chr3L | 24539361 | chr3L | 11102063..11102237 | 1078..1252 | 860 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 11100567..11100715 | 1..149 | 730 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 11110029..11110404 | 148..523 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 11111745..11112119 | 1517..1891 | 1860 | 99.7 | Plus |
3L | 28110227 | 3L | 11110503..11110800 | 522..819 | 1490 | 100 | Plus |
3L | 28110227 | 3L | 11111423..11111690 | 1251..1518 | 1340 | 100 | Plus |
3L | 28110227 | 3L | 11110862..11111119 | 820..1077 | 1290 | 100 | Plus |
3L | 28110227 | 3L | 11111188..11111362 | 1078..1252 | 875 | 100 | Plus |
3L | 28110227 | 3L | 11109692..11109840 | 1..149 | 730 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 11103129..11103504 | 148..523 | 1880 | 100 | Plus |
3L | 28103327 | 3L | 11104845..11105219 | 1517..1891 | 1860 | 99.7 | Plus |
3L | 28103327 | 3L | 11103603..11103900 | 522..819 | 1490 | 100 | Plus |
3L | 28103327 | 3L | 11104523..11104790 | 1251..1518 | 1340 | 100 | Plus |
3L | 28103327 | 3L | 11103962..11104219 | 820..1077 | 1290 | 100 | Plus |
3L | 28103327 | 3L | 11104288..11104462 | 1078..1252 | 875 | 100 | Plus |
3L | 28103327 | 3L | 11102792..11102940 | 1..149 | 730 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 1038..1076 | 1838..1876 | 114 | 76.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 11100567..11100714 | 1..148 | 99 | -> | Plus |
chr3L | 11100905..11101279 | 149..523 | 99 | -> | Plus |
chr3L | 11101380..11101675 | 524..819 | 97 | -> | Plus |
chr3L | 11101737..11101994 | 820..1077 | 98 | -> | Plus |
chr3L | 11102063..11102237 | 1078..1252 | 99 | -> | Plus |
chr3L | 11102300..11102563 | 1253..1516 | 100 | -> | Plus |
chr3L | 11102620..11102992 | 1517..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 1..1491 | 146..1636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 1..1491 | 146..1636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 1..1491 | 146..1636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 1..1491 | 146..1636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 1..1491 | 146..1636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 31..1919 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 31..1919 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 3..1891 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 1..1889 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7638-RA | 3..1891 | 1..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11110505..11110800 | 524..819 | 100 | -> | Plus |
3L | 11109692..11109839 | 1..148 | 99 | -> | Plus |
3L | 11110030..11110404 | 149..523 | 100 | -> | Plus |
3L | 11110862..11111119 | 820..1077 | 100 | -> | Plus |
3L | 11111188..11111362 | 1078..1252 | 100 | -> | Plus |
3L | 11111425..11111688 | 1253..1516 | 100 | -> | Plus |
3L | 11111745..11112117 | 1517..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11110505..11110800 | 524..819 | 100 | -> | Plus |
3L | 11109692..11109839 | 1..148 | 99 | -> | Plus |
3L | 11110030..11110404 | 149..523 | 100 | -> | Plus |
3L | 11110862..11111119 | 820..1077 | 100 | -> | Plus |
3L | 11111188..11111362 | 1078..1252 | 100 | -> | Plus |
3L | 11111425..11111688 | 1253..1516 | 100 | -> | Plus |
3L | 11111745..11112117 | 1517..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11110505..11110800 | 524..819 | 100 | -> | Plus |
3L | 11109692..11109839 | 1..148 | 99 | -> | Plus |
3L | 11110030..11110404 | 149..523 | 100 | -> | Plus |
3L | 11110862..11111119 | 820..1077 | 100 | -> | Plus |
3L | 11111188..11111362 | 1078..1252 | 100 | -> | Plus |
3L | 11111425..11111688 | 1253..1516 | 100 | -> | Plus |
3L | 11111745..11112117 | 1517..1889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 11104845..11105217 | 1517..1889 | 99 | Plus | |
arm_3L | 11102792..11102939 | 1..148 | 99 | -> | Plus |
arm_3L | 11103130..11103504 | 149..523 | 100 | -> | Plus |
arm_3L | 11103605..11103900 | 524..819 | 100 | -> | Plus |
arm_3L | 11103962..11104219 | 820..1077 | 100 | -> | Plus |
arm_3L | 11104288..11104462 | 1078..1252 | 100 | -> | Plus |
arm_3L | 11104525..11104788 | 1253..1516 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11104845..11105217 | 1517..1889 | 99 | Plus | |
3L | 11103130..11103504 | 149..523 | 100 | -> | Plus |
3L | 11103605..11103900 | 524..819 | 100 | -> | Plus |
3L | 11103962..11104219 | 820..1077 | 100 | -> | Plus |
3L | 11104288..11104462 | 1078..1252 | 100 | -> | Plus |
3L | 11104525..11104788 | 1253..1516 | 100 | -> | Plus |
3L | 11102792..11102939 | 1..148 | 99 | -> | Plus |
Translation from 145 to 1635
> RE42071.hyp MAVLGAQLVITLVMVSVIQKLSPHYSFAKWILCRTGLYRYLHPTDDELRS RGGVPKEKPPKGGRNKQANGSGGAAGAQFHIPRSIEVELLTSPVLERDVV HLRYFTEYQWLLDFSVYTGIVYVVSELFHFYYPLRHEVNLSMVWCLLVIF FALKLLSSLTVLYFQSEESIGERSMVIVACLVYLLVAMVVLIVDERILET GLEDAYASFNASASKFLTEQGLPSSGPASKIVVKFFLAMGCGLLGSLFTF PGLRMAKMHWDSLKYCRGNRLLQVLLNLSFVLPFILVILWIRPISRDYLT VRVFQGMQQPLLKPHVFETLRLLLVIFVVVVRFALMPIYLQSYLNLAHDK IMDLRKEAGRITNVEFKQKISSIFYYLCVVTLQFAAPLILCLYLTLMYKS LGGFSWSGIFRESVVLQHECAASETEGAGVAVSQGDGDFNIIESAQSLQA SFSSLKNVFSTEVYKGFLGFATWWSYFTLFATSSLGIVYQSYFNKT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7638-PA | 496 | CG7638-PA | 1..496 | 1..496 | 2540 | 100 | Plus |
Translation from 145 to 1635
> RE42071.pep MAVLGAQLVITLVMVSVIQKLSPHYSFAKWILCRTGLYRYLHPTDDELRS RGGVPKEKPPKGGRNKQANGSGGAAGAQFHIPRSIEVELLTSPVLERDVV HLRYFTEYQWLLDFSVYTGIVYVVSELFHFYYPLRHEVNLSMVWCLLVIF FALKLLSSLTVLYFQSEESIGERSMVIVACLVYLLVAMVVLIVDERILET GLEDAYASFNASASKFLTEQGLPSSGPASKIVVKFFLAMGCGLLGSLFTF PGLRMAKMHWDSLKYCRGNRLLQVLLNLSFVLPFILVILWIRPISRDYLT VRVFQGMQQPLLKPHVFETLRLLLVIFVVVVRFALMPIYLQSYLNLAHDK IMDLRKEAGRITNVEFKQKISSIFYYLCVVTLQFAAPLILCLYLTLMYKS LGGFSWSGIFRESVVLQHECAASETEGAGVAVSQGDGDFNIIESAQSLQA SFSSLKNVFSTEVYKGFLGFATWWSYFTLFATSSLGIVYQSYFNKT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25243-PA | 495 | GF25243-PA | 1..495 | 1..496 | 2395 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15480-PA | 495 | GG15480-PA | 1..495 | 1..496 | 2574 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16926-PA | 497 | GH16926-PA | 1..497 | 1..496 | 2178 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7638-PA | 496 | CG7638-PA | 1..496 | 1..496 | 2540 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13681-PA | 490 | GI13681-PA | 1..490 | 1..496 | 2259 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22761-PA | 492 | GL22761-PA | 1..492 | 1..496 | 2282 | 88.6 | Plus |
Dper\GL25720-PA | 103 | GL25720-PA | 1..46 | 142..187 | 209 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20498-PA | 492 | GA20498-PA | 1..492 | 1..496 | 2280 | 88.6 | Plus |
Dpse\GA28148-PA | 159 | GA28148-PA | 1..144 | 1..187 | 623 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25251-PA | 494 | GM25251-PA | 1..494 | 1..496 | 2564 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14285-PA | 494 | GD14285-PA | 1..494 | 1..496 | 2574 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14021-PA | 491 | GJ14021-PA | 1..491 | 1..496 | 2204 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20335-PA | 495 | GK20335-PA | 1..495 | 1..496 | 2266 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21790-PA | 493 | GE21790-PA | 1..493 | 1..496 | 2535 | 97.4 | Plus |