Clone RE42193 Report

Search the DGRC for RE42193

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:421
Well:93
Vector:pFlc-1
Associated Gene/TranscriptCG1172-RA
Protein status:RE42193.pep: gold
Preliminary Size:985
Sequenced Size:2027

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1172 2002-01-01 Sim4 clustering to Release 2
CG1172 2002-02-22 Blastp of sequenced clone
CG1172 2003-01-01 Sim4 clustering to Release 3
CG1172 2008-04-29 Release 5.5 accounting
CG1172 2008-08-15 Release 5.9 accounting
CG1172 2008-12-18 5.12 accounting

Clone Sequence Records

RE42193.complete Sequence

2027 bp (2027 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084174

> RE42193.complete
TGGTGTTTTGTTGCTGTGGCTGCGGTCACACTGGTCGTGTTCATAAAATA
AAAAGGAGAGGGCAATTTAAGTAACAATAATAGAAATAAACAGCCGACCG
ACCGATAACTGAGTCCCAAAATAAGGCGCACCTAGTATAGACAAGCAGGC
AAACAAGGCGGCTGTGCGGGCGGAGATCCTTCTTACCGGAGCTGACCTGA
ACGGAGCGGAGTGGATTGGAGTGCGGAGCAGTGCAGTGCAGCTGAGCGTG
ACAATGGGCGCCTGTGTATGTCGCATGAACCCCGACAACGAGACGATGAG
CGTCTCCTCTGCGAGCATCTCGCGTCCGGCCAGTGCAGGCATTGCCATGG
GTGCGGCGCGCAAGAACCGACCGCTTTGCCACGAGACTATCAGGTGGCGG
TCCGACGTGCCACTGACCGAGGGTCAGCTGCGGTCCAAGCGGGACGAGTT
CTGGGATACTGCGCCGGCCTTCGACGGTCGCAAGGAGATCTGGGATGCGC
TACGGGCGGCAACCACCGCGGCCGAGGGTCTTGACTTTCAGATGGCCCAG
GCCATCCTGGATGGGGCTAACGTGTCGGTTCCCAATGGCTACCTTACAGA
ATGCTACGATGAGCTGGGCACCCAGTACAAAGTGCCCATCTACTGTCTGT
CATATCCCATAAATATCGTAAAGGAGGAGAACGGGCGCGACTCGCCTGCC
GAATACTCTGAGCCCGTGGATGGCGGCACCGATATCTTCTTGAAGCTGCG
CATATCATCGACCATGACTGATGTTAAACTACCCGTTTACTCCAAGGACA
CCGTGGGGCAGTGCAAGAAAAAGCTTCAGGCCGCGGAGGGTGTCGACGCC
TGCTGCCAGCGATGGTTCTACAGCGGAAAACTCCTGGGCGACAAGGTGCC
AATCGACGAGTGCAGCATACACCAGGGATATGTGGTGCAGGTGATTGTCA
ACACGGAGCACTACAACCACGACAACAGCACGAGTACAGCGCACGCCAGC
TAGCGGCGCAGTCTACTCCCACTAGTCAACAGCATCAGCAAGGAGCCACA
GCAGCAGCCGCAGGATCAGCATCAGCAGCAGCAACACGTTTTGGCCAAAG
CGGGCAACTTCATCCGGCGGAGGAGGATTGTCACATACTCAGTTCATGGC
ACAAGGAACCATAAGGGGAATGTACAGAAAATAGCAGAGCATCAACGAGT
ACAACAGCAACAGCATACTCATAGCATTTATCAAAACAAGCAACAATTGC
AAATTGTTGCCCTGTCTGCCTTGTTGCTGTTGCTTTTGTTGTGGCTGCTC
GCCTTGTTATGCTTTGTTTAATATGTCTATATATAAAATTTGAAACAAAA
GATCGAAACCGAGTCGCTGAGAAAGGGAATTCGAAATGGTGAATAAGAAT
AAGAGTGTGAGAATGATATACATAAATCATACACTTACATATATTTTTTT
GATGATAATTACATGATAAAACAACTGATTTAGGCAGTGCAGAAGATATA
TACATGTCAACTGTATATAAAAGCAGATATATAGCAAATAGTAACCGAGA
TCTTGGCCACTTGTCTTGAAAACTGTAAGTGTGTACATTTTCATAAAAAC
CAACATAGAAGGCCTCTATTAACTAATTGTAAGCAAGTGTTAGATCATTT
GCCCGATGTATATGTAATGTAAAAATAAACGAGAAACGTAGTATTTGGCC
GCAATGGAAAGCATGCAACAAACCATTTTTGATACTGTACAAAATGCCAA
GCACAAAACTATGAGAATGCGAATCATAACACACAGAACACACAGATCGT
TAAGCGAATAACTTGCTCAAATGTAGTTAACAAGAAAGAAGGGAACACAT
CGTGAGGAGGGAGGGCAGTGAATGCGAGGTGGGGAGTTGGAGAGTTAACC
CAAGTACCTTATAAATGTATATGATTTAATTTGCGTTTGGAGTCAATAAC
TTATCTCTGATGTACATGAATTTCTTGTATAATTTTTTAAATAAATTTGG
ATAGTCAAATGAAAAAAAAAAAAAAAA

RE42193.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-RA 2190 CG1172-RA 17..2027 2..2012 10040 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1221661..1222847 825..2011 5935 100 Plus
chr3R 27901430 chr3R 1220132..1220386 334..588 1275 100 Plus
chr3R 27901430 chr3R 1221181..1221423 588..830 1215 100 Plus
chr3R 27901430 chr3R 1219588..1219761 2..175 855 99.4 Plus
chr3R 27901430 chr3R 1219888..1220053 174..339 830 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:56:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5396002..5397189 825..2012 5940 100 Plus
3R 32079331 3R 5394473..5394727 334..588 1275 100 Plus
3R 32079331 3R 5395522..5395764 588..830 1215 100 Plus
3R 32079331 3R 5393929..5394102 2..175 855 99.4 Plus
3R 32079331 3R 5394229..5394394 174..339 830 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5136833..5138020 825..2012 5940 100 Plus
3R 31820162 3R 5135304..5135558 334..588 1275 100 Plus
3R 31820162 3R 5136353..5136595 588..830 1215 100 Plus
3R 31820162 3R 5134760..5134933 2..175 855 99.4 Plus
3R 31820162 3R 5135060..5135225 174..339 830 100 Plus
Blast to na_te.dros performed 2019-03-16 19:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6792..6844 1308..1254 134 78.6 Minus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 777..826 43..92 115 70 Plus

RE42193.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:13:30 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1219587..1219761 1..175 98 == Plus
chr3R 1219963..1220052 249..338 100 -> Plus
chr3R 1220137..1220386 339..588 100 -> Plus
chr3R 1221182..1221422 589..829 100 -> Plus
chr3R 1221666..1221865 830..1029 100 == Plus
chr3R 1221923..1222809 1087..1973 100 -- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:16:27 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 1..750 254..1003 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:45 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 1..750 254..1003 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:43 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 1..750 254..1003 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:30 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 1..750 254..1003 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:56 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 1..750 254..1003 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:58 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 2..2011 2..2011 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:45 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 2..2011 2..2011 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:43 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 23..2033 1..2011 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:30 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 2..2011 2..2011 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:56 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 7..2017 1..2011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:30 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5394478..5394727 339..588 100 -> Plus
3R 5393928..5394102 1..175 98 -> Plus
3R 5394231..5394393 176..338 100 -> Plus
3R 5395523..5395763 589..829 100 -> Plus
3R 5396007..5397188 830..2011 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:30 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5394478..5394727 339..588 100 -> Plus
3R 5393928..5394102 1..175 98 -> Plus
3R 5394231..5394393 176..338 100 -> Plus
3R 5395523..5395763 589..829 100 -> Plus
3R 5396007..5397188 830..2011 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:30 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5394478..5394727 339..588 100 -> Plus
3R 5393928..5394102 1..175 98 -> Plus
3R 5394231..5394393 176..338 100 -> Plus
3R 5395523..5395763 589..829 100 -> Plus
3R 5396007..5397188 830..2011 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:43 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1220200..1220449 339..588 100 -> Plus
arm_3R 1221245..1221485 589..829 100 -> Plus
arm_3R 1219650..1219824 1..175 98 -> Plus
arm_3R 1219953..1220115 176..338 100 -> Plus
arm_3R 1221729..1222910 830..2011 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:33 Download gff for RE42193.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5135309..5135558 339..588 100 -> Plus
3R 5136354..5136594 589..829 100 -> Plus
3R 5136838..5138019 830..2011 100   Plus
3R 5134759..5134933 1..175 98 -> Plus
3R 5135062..5135224 176..338 100 -> Plus

RE42193.pep Sequence

Translation from 253 to 1002

> RE42193.pep
MGACVCRMNPDNETMSVSSASISRPASAGIAMGAARKNRPLCHETIRWRS
DVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDALRAATTAAEGLDFQMAQA
ILDGANVSVPNGYLTECYDELGTQYKVPIYCLSYPINIVKEENGRDSPAE
YSEPVDGGTDIFLKLRISSTMTDVKLPVYSKDTVGQCKKKLQAAEGVDAC
CQRWFYSGKLLGDKVPIDECSIHQGYVVQVIVNTEHYNHDNSTSTAHAS*

RE42193.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17251-PA 251 GF17251-PA 1..248 1..248 1320 97.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12804-PA 249 GG12804-PA 1..249 1..249 1337 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17866-PA 253 GH17866-PA 1..250 1..249 1288 95.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-PB 249 CG1172-PB 1..249 1..249 1326 100 Plus
CG1172-PC 249 CG1172-PC 1..249 1..249 1326 100 Plus
CG1172-PA 249 CG1172-PA 1..249 1..249 1326 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23952-PA 253 GI23952-PA 1..250 1..249 1272 94 Plus
Dmoj\GI14533-PA 82 GI14533-PA 1..79 171..249 409 93.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21661-PA 252 GL21661-PA 1..249 1..249 1311 96 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11159-PA 252 GA11159-PA 1..249 1..249 1311 96 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10807-PA 249 GM10807-PA 1..249 1..249 1345 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19780-PA 249 GD19780-PA 1..249 1..249 1345 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11109-PA 253 GJ11109-PA 1..250 1..249 1222 95.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22324-PA 251 GK22324-PA 1..251 1..249 1225 88.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25467-PA 249 GE25467-PA 1..249 1..249 1334 98.4 Plus

RE42193.hyp Sequence

Translation from 253 to 1002

> RE42193.hyp
MGACVCRMNPDNETMSVSSASISRPASAGIAMGAARKNRPLCHETIRWRS
DVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDALRAATTAAEGLDFQMAQA
ILDGANVSVPNGYLTECYDELGTQYKVPIYCLSYPINIVKEENGRDSPAE
YSEPVDGGTDIFLKLRISSTMTDVKLPVYSKDTVGQCKKKLQAAEGVDAC
CQRWFYSGKLLGDKVPIDECSIHQGYVVQVIVNTEHYNHDNSTSTAHAS*

RE42193.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-PB 249 CG1172-PB 1..249 1..249 1326 100 Plus
CG1172-PC 249 CG1172-PC 1..249 1..249 1326 100 Plus
CG1172-PA 249 CG1172-PA 1..249 1..249 1326 100 Plus