BDGP Sequence Production Resources |
Search the DGRC for RE42193
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 421 |
Well: | 93 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1172-RA |
Protein status: | RE42193.pep: gold |
Preliminary Size: | 985 |
Sequenced Size: | 2027 |
Gene | Date | Evidence |
---|---|---|
CG1172 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1172 | 2002-02-22 | Blastp of sequenced clone |
CG1172 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1172 | 2008-04-29 | Release 5.5 accounting |
CG1172 | 2008-08-15 | Release 5.9 accounting |
CG1172 | 2008-12-18 | 5.12 accounting |
2027 bp (2027 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084174
> RE42193.complete TGGTGTTTTGTTGCTGTGGCTGCGGTCACACTGGTCGTGTTCATAAAATA AAAAGGAGAGGGCAATTTAAGTAACAATAATAGAAATAAACAGCCGACCG ACCGATAACTGAGTCCCAAAATAAGGCGCACCTAGTATAGACAAGCAGGC AAACAAGGCGGCTGTGCGGGCGGAGATCCTTCTTACCGGAGCTGACCTGA ACGGAGCGGAGTGGATTGGAGTGCGGAGCAGTGCAGTGCAGCTGAGCGTG ACAATGGGCGCCTGTGTATGTCGCATGAACCCCGACAACGAGACGATGAG CGTCTCCTCTGCGAGCATCTCGCGTCCGGCCAGTGCAGGCATTGCCATGG GTGCGGCGCGCAAGAACCGACCGCTTTGCCACGAGACTATCAGGTGGCGG TCCGACGTGCCACTGACCGAGGGTCAGCTGCGGTCCAAGCGGGACGAGTT CTGGGATACTGCGCCGGCCTTCGACGGTCGCAAGGAGATCTGGGATGCGC TACGGGCGGCAACCACCGCGGCCGAGGGTCTTGACTTTCAGATGGCCCAG GCCATCCTGGATGGGGCTAACGTGTCGGTTCCCAATGGCTACCTTACAGA ATGCTACGATGAGCTGGGCACCCAGTACAAAGTGCCCATCTACTGTCTGT CATATCCCATAAATATCGTAAAGGAGGAGAACGGGCGCGACTCGCCTGCC GAATACTCTGAGCCCGTGGATGGCGGCACCGATATCTTCTTGAAGCTGCG CATATCATCGACCATGACTGATGTTAAACTACCCGTTTACTCCAAGGACA CCGTGGGGCAGTGCAAGAAAAAGCTTCAGGCCGCGGAGGGTGTCGACGCC TGCTGCCAGCGATGGTTCTACAGCGGAAAACTCCTGGGCGACAAGGTGCC AATCGACGAGTGCAGCATACACCAGGGATATGTGGTGCAGGTGATTGTCA ACACGGAGCACTACAACCACGACAACAGCACGAGTACAGCGCACGCCAGC TAGCGGCGCAGTCTACTCCCACTAGTCAACAGCATCAGCAAGGAGCCACA GCAGCAGCCGCAGGATCAGCATCAGCAGCAGCAACACGTTTTGGCCAAAG CGGGCAACTTCATCCGGCGGAGGAGGATTGTCACATACTCAGTTCATGGC ACAAGGAACCATAAGGGGAATGTACAGAAAATAGCAGAGCATCAACGAGT ACAACAGCAACAGCATACTCATAGCATTTATCAAAACAAGCAACAATTGC AAATTGTTGCCCTGTCTGCCTTGTTGCTGTTGCTTTTGTTGTGGCTGCTC GCCTTGTTATGCTTTGTTTAATATGTCTATATATAAAATTTGAAACAAAA GATCGAAACCGAGTCGCTGAGAAAGGGAATTCGAAATGGTGAATAAGAAT AAGAGTGTGAGAATGATATACATAAATCATACACTTACATATATTTTTTT GATGATAATTACATGATAAAACAACTGATTTAGGCAGTGCAGAAGATATA TACATGTCAACTGTATATAAAAGCAGATATATAGCAAATAGTAACCGAGA TCTTGGCCACTTGTCTTGAAAACTGTAAGTGTGTACATTTTCATAAAAAC CAACATAGAAGGCCTCTATTAACTAATTGTAAGCAAGTGTTAGATCATTT GCCCGATGTATATGTAATGTAAAAATAAACGAGAAACGTAGTATTTGGCC GCAATGGAAAGCATGCAACAAACCATTTTTGATACTGTACAAAATGCCAA GCACAAAACTATGAGAATGCGAATCATAACACACAGAACACACAGATCGT TAAGCGAATAACTTGCTCAAATGTAGTTAACAAGAAAGAAGGGAACACAT CGTGAGGAGGGAGGGCAGTGAATGCGAGGTGGGGAGTTGGAGAGTTAACC CAAGTACCTTATAAATGTATATGATTTAATTTGCGTTTGGAGTCAATAAC TTATCTCTGATGTACATGAATTTCTTGTATAATTTTTTAAATAAATTTGG ATAGTCAAATGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1172-RA | 2190 | CG1172-RA | 17..2027 | 2..2012 | 10040 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1221661..1222847 | 825..2011 | 5935 | 100 | Plus |
chr3R | 27901430 | chr3R | 1220132..1220386 | 334..588 | 1275 | 100 | Plus |
chr3R | 27901430 | chr3R | 1221181..1221423 | 588..830 | 1215 | 100 | Plus |
chr3R | 27901430 | chr3R | 1219588..1219761 | 2..175 | 855 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 1219888..1220053 | 174..339 | 830 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5396002..5397189 | 825..2012 | 5940 | 100 | Plus |
3R | 32079331 | 3R | 5394473..5394727 | 334..588 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 5395522..5395764 | 588..830 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 5393929..5394102 | 2..175 | 855 | 99.4 | Plus |
3R | 32079331 | 3R | 5394229..5394394 | 174..339 | 830 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5136833..5138020 | 825..2012 | 5940 | 100 | Plus |
3R | 31820162 | 3R | 5135304..5135558 | 334..588 | 1275 | 100 | Plus |
3R | 31820162 | 3R | 5136353..5136595 | 588..830 | 1215 | 100 | Plus |
3R | 31820162 | 3R | 5134760..5134933 | 2..175 | 855 | 99.4 | Plus |
3R | 31820162 | 3R | 5135060..5135225 | 174..339 | 830 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6844 | 1308..1254 | 134 | 78.6 | Minus |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 777..826 | 43..92 | 115 | 70 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1219587..1219761 | 1..175 | 98 | == | Plus |
chr3R | 1219963..1220052 | 249..338 | 100 | -> | Plus |
chr3R | 1220137..1220386 | 339..588 | 100 | -> | Plus |
chr3R | 1221182..1221422 | 589..829 | 100 | -> | Plus |
chr3R | 1221666..1221865 | 830..1029 | 100 | == | Plus |
chr3R | 1221923..1222809 | 1087..1973 | 100 | -- | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 1..750 | 254..1003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 1..750 | 254..1003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 1..750 | 254..1003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 1..750 | 254..1003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 1..750 | 254..1003 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 2..2011 | 2..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 2..2011 | 2..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 23..2033 | 1..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 2..2011 | 2..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1172-RA | 7..2017 | 1..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5394478..5394727 | 339..588 | 100 | -> | Plus |
3R | 5393928..5394102 | 1..175 | 98 | -> | Plus |
3R | 5394231..5394393 | 176..338 | 100 | -> | Plus |
3R | 5395523..5395763 | 589..829 | 100 | -> | Plus |
3R | 5396007..5397188 | 830..2011 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5394478..5394727 | 339..588 | 100 | -> | Plus |
3R | 5393928..5394102 | 1..175 | 98 | -> | Plus |
3R | 5394231..5394393 | 176..338 | 100 | -> | Plus |
3R | 5395523..5395763 | 589..829 | 100 | -> | Plus |
3R | 5396007..5397188 | 830..2011 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5394478..5394727 | 339..588 | 100 | -> | Plus |
3R | 5393928..5394102 | 1..175 | 98 | -> | Plus |
3R | 5394231..5394393 | 176..338 | 100 | -> | Plus |
3R | 5395523..5395763 | 589..829 | 100 | -> | Plus |
3R | 5396007..5397188 | 830..2011 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1220200..1220449 | 339..588 | 100 | -> | Plus |
arm_3R | 1221245..1221485 | 589..829 | 100 | -> | Plus |
arm_3R | 1219650..1219824 | 1..175 | 98 | -> | Plus |
arm_3R | 1219953..1220115 | 176..338 | 100 | -> | Plus |
arm_3R | 1221729..1222910 | 830..2011 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5135309..5135558 | 339..588 | 100 | -> | Plus |
3R | 5136354..5136594 | 589..829 | 100 | -> | Plus |
3R | 5136838..5138019 | 830..2011 | 100 | Plus | |
3R | 5134759..5134933 | 1..175 | 98 | -> | Plus |
3R | 5135062..5135224 | 176..338 | 100 | -> | Plus |
Translation from 253 to 1002
> RE42193.pep MGACVCRMNPDNETMSVSSASISRPASAGIAMGAARKNRPLCHETIRWRS DVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDALRAATTAAEGLDFQMAQA ILDGANVSVPNGYLTECYDELGTQYKVPIYCLSYPINIVKEENGRDSPAE YSEPVDGGTDIFLKLRISSTMTDVKLPVYSKDTVGQCKKKLQAAEGVDAC CQRWFYSGKLLGDKVPIDECSIHQGYVVQVIVNTEHYNHDNSTSTAHAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17251-PA | 251 | GF17251-PA | 1..248 | 1..248 | 1320 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12804-PA | 249 | GG12804-PA | 1..249 | 1..249 | 1337 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17866-PA | 253 | GH17866-PA | 1..250 | 1..249 | 1288 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1172-PB | 249 | CG1172-PB | 1..249 | 1..249 | 1326 | 100 | Plus |
CG1172-PC | 249 | CG1172-PC | 1..249 | 1..249 | 1326 | 100 | Plus |
CG1172-PA | 249 | CG1172-PA | 1..249 | 1..249 | 1326 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23952-PA | 253 | GI23952-PA | 1..250 | 1..249 | 1272 | 94 | Plus |
Dmoj\GI14533-PA | 82 | GI14533-PA | 1..79 | 171..249 | 409 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21661-PA | 252 | GL21661-PA | 1..249 | 1..249 | 1311 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11159-PA | 252 | GA11159-PA | 1..249 | 1..249 | 1311 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10807-PA | 249 | GM10807-PA | 1..249 | 1..249 | 1345 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19780-PA | 249 | GD19780-PA | 1..249 | 1..249 | 1345 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11109-PA | 253 | GJ11109-PA | 1..250 | 1..249 | 1222 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22324-PA | 251 | GK22324-PA | 1..251 | 1..249 | 1225 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25467-PA | 249 | GE25467-PA | 1..249 | 1..249 | 1334 | 98.4 | Plus |
Translation from 253 to 1002
> RE42193.hyp MGACVCRMNPDNETMSVSSASISRPASAGIAMGAARKNRPLCHETIRWRS DVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDALRAATTAAEGLDFQMAQA ILDGANVSVPNGYLTECYDELGTQYKVPIYCLSYPINIVKEENGRDSPAE YSEPVDGGTDIFLKLRISSTMTDVKLPVYSKDTVGQCKKKLQAAEGVDAC CQRWFYSGKLLGDKVPIDECSIHQGYVVQVIVNTEHYNHDNSTSTAHAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1172-PB | 249 | CG1172-PB | 1..249 | 1..249 | 1326 | 100 | Plus |
CG1172-PC | 249 | CG1172-PC | 1..249 | 1..249 | 1326 | 100 | Plus |
CG1172-PA | 249 | CG1172-PA | 1..249 | 1..249 | 1326 | 100 | Plus |