BDGP Sequence Production Resources |
Search the DGRC for RE42326
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 423 |
Well: | 26 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11151-RA |
Protein status: | RE42326.pep: gold |
Preliminary Size: | 688 |
Sequenced Size: | 721 |
Gene | Date | Evidence |
---|---|---|
CG11151 | 2001-12-16 | Blastp of sequenced clone |
CG11151 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11151 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11151 | 2008-04-29 | Release 5.5 accounting |
CG11151 | 2008-08-15 | Release 5.9 accounting |
CG11151 | 2008-12-18 | 5.12 accounting |
721 bp (721 high quality bases) assembled on 2001-12-16
GenBank Submission: AY071384
> RE42326.complete AACTTGCTATACGACCATCCCGCTCCCACACAACAGGGGCAGTGTAGTGA AAAAAGCGACAATAAAATCGCCGATTGCACGCCTTCTGCTCATTACTTCG CGTTCCGCTCTCAAAGCAAATACCCCCACAACAACAACAACAACAACCAT GTCTCTGCAGTCGGACGCCGTTTTCCAAAAGATCATCGATGGACTGAAGG AGAACGAGGCCAAGGCCAAGGCGGTCAACGGTGTGTTCCTGTACAAAATC ACCAAGGACGGCAAGGTGGCCAAGGAGTGGACTCTGGACTGCAAGAACGC CAAGGCCTACGAGGGACCTGCCCAGGGCATCAAGGTGGACACCACCTTGA CGGTCGCCGACGAGGACATGGTTGACATCGCCCTGGGCAAGCTGAACCCC CAGGCTGCCTTCATGAAGGGCAAGCTGAAGATCGCCGGCAACATCATGCT CACCCAGAAGCTGGCGCCGCTCCTGAAGACCGACGCCAAGTTGTAAAAAA GGAGTGATCAACAATAACCCAGCCCAGTTAGCACATTCCTCAACGAGACA GTGTGTGTGTGTTCCCTTTTACACAATTTTTTTTTTTTTTCGTGTGTGTA ATTTGTAATCTGTATTCGTGTTTTTGTTTCACCACATAATTAATGTTATT TTTGTACGGAAAAACCCGTCTACAAAACTAGAAAATAATACATAAGGCGA AAACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 13631407..13631830 | 282..705 | 2120 | 100 | Plus |
chrX | 22417052 | chrX | 13630678..13630841 | 118..281 | 820 | 100 | Plus |
chrX | 22417052 | chrX | 13630473..13630589 | 1..117 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 694..798 | 653..556 | 129 | 63.8 | Minus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 3564..3597 | 628..595 | 125 | 85.3 | Minus |
opus | 7521 | opus OPUS 7521bp | 6164..6259 | 656..558 | 111 | 61.8 | Minus |
gypsy7 | 5486 | gypsy7 GYPSY7 5486bp | 5078..5120 | 567..609 | 107 | 72.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 13630473..13630589 | 1..117 | 100 | == | Plus |
chrX | 13630708..13630841 | 148..281 | 100 | -> | Plus |
chrX | 13631407..13631830 | 282..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..348 | 149..496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..348 | 149..496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..348 | 149..496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..348 | 149..496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..348 | 149..496 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..705 | 1..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..705 | 1..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..705 | 1..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..705 | 1..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11151-RA | 1..705 | 1..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13739744..13739860 | 1..117 | 100 | -> | Plus |
X | 13739949..13740112 | 118..281 | 100 | -> | Plus |
X | 13740678..13741101 | 282..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13739744..13739860 | 1..117 | 100 | -> | Plus |
X | 13739949..13740112 | 118..281 | 100 | -> | Plus |
X | 13740678..13741101 | 282..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13739744..13739860 | 1..117 | 100 | -> | Plus |
X | 13739949..13740112 | 118..281 | 100 | -> | Plus |
X | 13740678..13741101 | 282..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 13633777..13633893 | 1..117 | 100 | -> | Plus |
arm_X | 13633982..13634145 | 118..281 | 100 | -> | Plus |
arm_X | 13634711..13635134 | 282..705 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13748776..13749199 | 282..705 | 100 | Plus | |
X | 13747842..13747958 | 1..117 | 100 | -> | Plus |
X | 13748047..13748210 | 118..281 | 100 | -> | Plus |
Translation from 0 to 495
> RE42326.hyp TCYTTIPLPHNRGSVVKKATIKSPIARLLLITSRSALKANTPTTTTTTTM SLQSDAVFQKIIDGLKENEAKAKAVNGVFLYKITKDGKVAKEWTLDCKNA KAYEGPAQGIKVDTTLTVADEDMVDIALGKLNPQAAFMKGKLKIAGNIML TQKLAPLLKTDAKL*
Translation from 148 to 495
> RE42326.pep MSLQSDAVFQKIIDGLKENEAKAKAVNGVFLYKITKDGKVAKEWTLDCKN AKAYEGPAQGIKVDTTLTVADEDMVDIALGKLNPQAAFMKGKLKIAGNIM LTQKLAPLLKTDAKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22601-PA | 115 | GF22601-PA | 1..115 | 1..115 | 565 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17809-PA | 115 | GG17809-PA | 1..115 | 1..115 | 576 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11852-PA | 115 | GH11852-PA | 1..115 | 1..115 | 562 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11151-PB | 115 | CG11151-PB | 1..115 | 1..115 | 576 | 100 | Plus |
CG11151-PA | 115 | CG11151-PA | 1..115 | 1..115 | 576 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14334-PA | 115 | GI14334-PA | 1..115 | 1..115 | 558 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19866-PA | 115 | GL19866-PA | 1..115 | 1..115 | 570 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10798-PA | 115 | GA10798-PA | 1..115 | 1..115 | 570 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17637-PA | 115 | GM17637-PA | 1..115 | 1..115 | 576 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24813-PA | 96 | GD24813-PA | 1..95 | 1..95 | 450 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19388-PA | 115 | GJ19388-PA | 1..115 | 1..115 | 562 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25217-PA | 115 | GK25217-PA | 1..115 | 1..115 | 564 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17105-PA | 115 | GE17105-PA | 1..115 | 1..115 | 576 | 99.1 | Plus |