BDGP Sequence Production Resources |
Search the DGRC for RE42467
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 424 |
Well: | 67 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG30080-RA |
Protein status: | RE42467.pep: gold |
Sequenced Size: | 2805 |
Gene | Date | Evidence |
---|---|---|
CG12965 | 2002-01-01 | Sim4 clustering to Release 2 |
CG30080 | 2002-04-22 | Blastp of sequenced clone |
CG30080 | 2003-01-01 | Sim4 clustering to Release 3 |
CG30080 | 2008-04-29 | Release 5.5 accounting |
CG30080 | 2008-08-15 | Release 5.9 accounting |
CG30080 | 2008-12-18 | 5.12 accounting |
2805 bp (2805 high quality bases) assembled on 2002-04-22
GenBank Submission: AY113469
> RE42467.complete CGGTTTCCTTAGGAGCGCCATGGAGTGCAGAGCTGTTCCCATTCTACCCA CCTATTCTCAAGCCTGTGGTACTCCTATGCCCCGGAAAACGTCCCTCTGC CGTACACTCTTTGATTATGGTCCTCTAAACGATCCGGTGATCATACTCAT AACACTGGCCGTCGTAGTTGGATCCTTTTGCCTGCTCAGCGGATTCATTT TACTGTGCGTTGTCTCAAAAGCCTGGCAGGATGAGACTTCCGAGGCCATT CTCCTAATGGCGATTGGCTTCTTCATCACGGCTTTGTCCTGCGTATCGTG GAAATTGACGCGAGCTCAACGAATTTCCCAGTTAGTGGATGCCCTCAGCG TAGATAACCAAACCATTTAGCTTGAAAGTATCTAACGTAAGACATATGAA AACTACGAGCTTGCAATTAGTTGCAATATACCTGATAAACTCTAAAACGT TCAACATTAGGGGCTGTCCGAAGTAAGATTGGTCTTAAGTTGTTTTTCCT ATTCGCTTATGTTAAAGTACATGAATTATCTTATCAATGTCACCTATTTA ATAATCTTGTTTGCTTTATAATAATATAATAATAATAATATTTAATATTA ATATTAAGATATTAACCGAGACTCCCTGGTTTCGGACTAACTTAATACAT AAGTGGGCTAATCAACGTGCCACCGCACGCAAAGGATAACCTCTCATTCG GTTTTGAAAGATTCAATTGCAGCAAGGCCATCCAAAGTCGAGATCCCATT TGAATCTCGCTCCCTCCAGTTATCTTCTGATCCCCGAATTCTCCGCACGA ACTCTCACTGGCAATCAGCACGAATTCCTCACAGCAAATGAATTTCTTTG AAAGATTGGAATATCAGCATATGTCGCTTTGTTAAATGACCACTCACTTT AGAATTTGAAAAACAAGGGGCATTCCTCTTTATTTCCAAGTCCTTGGCGG TCAGCTGGTCCTTTGGCTTCGAAACTATTTTCGCGATGCACTAACATTCT CTGTAGTGTAAGCATTTGCCTGGCTTCTGATCGTAGGTGGTGCAGTATGT TTGATCTTGGGGAGGGAAACATTACTACAGGTCACCCCTCATCTGCTGGC ACTTACAGGGCTTCTCTGTTTGGTTTCCAAAGGGAACTGCTTGTCCGGAT TGTTGACCAAGTTTAAGGCATATGACCAGGAGCAGCAATTGCAAAACCGT CATTGCGCCACCAAGCTCTGATATGAACTGAATGCAGAAGACAGTCAAAC TTCAGAGGAATCTCTGTGGATTATCTGATTACAGGTAGCTTGATTGCATA TTGCAGTGATTAAATTTACAGAGAAACAAATAATGCTGCAGTGCAGGATA GAGAACATTAAATATTTATTTTAAATATAAAAAAGGGTGAAGAATGAATG CGTTGATACCATTTCTGTTAATATCTTTGTTTTCGGCTAACATAATTGTA TCTTAAAGCTGAATTTTTACTGAATTAAGAGAAGATTTGCTCATCAGTCA TATTACTAGCATAAAGAGGTTTTCGGTTAGATACACATCTAAAGAGTAAA CCATATTGCGAATTGTAGGTAACAAGAATTTGATCCTCACTCCATCCTGC TCTTAAGGACATGACCTACCCCTGGGCATCTGGAGGCGCAAAGAAAATGC AGCTGCTTGCGCCCCTACCTGAGATCAAATAGTCCTTGATCCTCAGTCCG AAACGAGAACTCATCGAGAGATGCCACACTTGCAGAACATCGAGCGGGAT TTTCCCCTTAACTGGACCTTGAATCCCATTCGGATCTCTAGTAGTCTCGC CGCAAATACTCTTTCCTTATATCGAAAGATCTCGCAAAACATGTGGCGCA GTTGTATTCAATTTTGCCATAGTCCCAAGTTCCAGCAATATGTTAGATTC CTCGAGTCCAGTCTCTGTCAGTTTTAAAGAGCAATGATCCAAGAAAATGC GTCGTCGCCTCGTCTTCAAAACAGATTGCTTTTGATTTGCAATCTTGGCA CGTTGACGATGCCAAAATTTGTTAGTTGAATTCATTATAGCGATACGCAG AGAGTCAGTCAACGATCTCGTTCCGAGAGGGGGGTTTCGCTTTGTTGTTT CAGAGTTCTGAAATACAACAATTTGTGGCATTGTAAAGTGCTCGTAACGC GATTGGGTTTGGGGCATTTCCAAGTCGGCGGCTGGGAAACTACCCTTGCC GCAGCAATTCCACCATCCAACCTTCAGTAGGGGGAAAACACCTCGCTTGG AGCTGCAATAAATTCCGGTCGCTATCAAGACGAGCGTTCAGTAACGTTTC AAAGCCAGACGCGCTAAGATTGCTAATTCCAAAGCTTCGACCAGTCGACG AGCATCAGAACATGGAGCACATTCGATTTGTTGACAAAGTCTTTAGAGCC CTGATCGCCGGCACCCTGCTGCTCCTGATGACCGCCATTTACCGGGAGGA CAACAACTCCGGATCCCACTACATCCATCCAAGACACGCCATGCAGTAGC TCCATCGTGGTCTACTAAGATCGATTCAACCTAGTCCGATGCAATCGAAT CTCTCGAAAGTGCGGCACAAAAACCGGTTGTGTATATTGCCGGCTCGACG ACATATCGCCATATCAACTAACTGCACAAATAATGTTATGTTATATGTTA ATAATGTTAATGTTAAGAAACATGTGTAATTATCTATAGCTCATCCCATC GTAACTAATCTAACTTATGTGCTATAATGTTAATACTTAGAAATTAGTTT TAGTGTGAAAATATAATATAAAATGCAATGTATATGAACAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG30080.d | 3511 | CG30080.d | 663..3450 | 3..2790 | 13925 | 99.9 | Plus |
CG30080-RA | 3042 | CG30080-RA | 194..2981 | 3..2790 | 13925 | 99.9 | Plus |
CG30080.a | 1617 | CG30080.a | 390..1611 | 1569..2790 | 6110 | 100 | Plus |
CG30080.a | 1617 | CG30080.a | 6..393 | 3..390 | 1940 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 11586880..11588527 | 1896..260 | 7570 | 97.6 | Minus |
chr2R | 21145070 | chr2R | 11585924..11586812 | 2789..1895 | 4290 | 98.9 | Minus |
chr2R | 21145070 | chr2R | 11588582..11588776 | 260..66 | 900 | 97.4 | Minus |
chr2R | 21145070 | chr2R | 11588832..11588895 | 66..3 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 15699688..15701324 | 1896..260 | 8170 | 99.9 | Minus |
2R | 25286936 | 2R | 15698725..15699620 | 2790..1895 | 4480 | 100 | Minus |
2R | 25286936 | 2R | 15701379..15701573 | 260..66 | 975 | 100 | Minus |
2R | 25286936 | 2R | 15701629..15701692 | 66..3 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 15700887..15702523 | 1896..260 | 8170 | 99.9 | Minus |
2R | 25260384 | 2R | 15699924..15700819 | 2790..1895 | 4480 | 100 | Minus |
2R | 25260384 | 2R | 15702578..15702772 | 260..66 | 975 | 100 | Minus |
2R | 25260384 | 2R | 15702828..15702891 | 66..3 | 320 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 11588582..11588775 | 67..260 | 97 | <- | Minus |
chr2R | 11588832..11588897 | 1..66 | 98 | Minus | |
chr2R | 11585924..11586810 | 1897..2789 | 98 | <- | Minus |
chr2R | 11586880..11588171 | 616..1896 | 95 | == | Minus |
chr2R | 11588224..11588526 | 261..563 | 97 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30080-RA | 1..351 | 20..370 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30080-RC | 1..351 | 20..370 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30080-RA | 1..351 | 20..370 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30080-RA | 1..351 | 20..370 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30080-RA | 1..351 | 20..370 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30080-RA | 1..2789 | 1..2789 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30080-RA | 1..2789 | 1..2789 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42662-RB | 3..2791 | 1..2789 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30080-RA | 1..2789 | 1..2789 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG30080-RA | 3..2791 | 1..2789 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15698726..15699618 | 1897..2789 | 100 | <- | Minus |
2R | 15699688..15701323 | 261..1896 | 99 | <- | Minus |
2R | 15701379..15701572 | 67..260 | 100 | <- | Minus |
2R | 15701629..15701694 | 1..66 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15698726..15699618 | 1897..2789 | 100 | <- | Minus |
2R | 15699688..15701323 | 261..1896 | 99 | <- | Minus |
2R | 15701379..15701572 | 67..260 | 100 | <- | Minus |
2R | 15701629..15701694 | 1..66 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15698726..15699618 | 1897..2789 | 100 | <- | Minus |
2R | 15699688..15701323 | 261..1896 | 99 | <- | Minus |
2R | 15701379..15701572 | 67..260 | 100 | <- | Minus |
2R | 15701629..15701694 | 1..66 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 11586231..11587123 | 1897..2789 | 100 | <- | Minus |
arm_2R | 11587193..11588828 | 261..1896 | 99 | <- | Minus |
arm_2R | 11588884..11589077 | 67..260 | 100 | <- | Minus |
arm_2R | 11589134..11589199 | 1..66 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15699925..15700817 | 1897..2789 | 100 | <- | Minus |
2R | 15700887..15702522 | 261..1896 | 99 | <- | Minus |
2R | 15702578..15702771 | 67..260 | 100 | <- | Minus |
2R | 15702828..15702893 | 1..66 | 98 | Minus |
Translation from 0 to 369
> RE42467.hyp SFLRSAMECRAVPILPTYSQACGTPMPRKTSLCRTLFDYGPLNDPVIILI TLAVVVGSFCLLSGFILLCVVSKAWQDETSEAILLMAIGFFITALSCVSW KLTRAQRISQLVDALSVDNQTI*
Translation from 19 to 369
> RE42467.pep MECRAVPILPTYSQACGTPMPRKTSLCRTLFDYGPLNDPVIILITLAVVV GSFCLLSGFILLCVVSKAWQDETSEAILLMAIGFFITALSCVSWKLTRAQ RISQLVDALSVDNQTI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13373-PA | 112 | GF13373-PA | 1..108 | 1..107 | 507 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22336-PA | 116 | GG22336-PA | 1..116 | 1..116 | 569 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22456-PA | 115 | GH22456-PA | 1..114 | 1..111 | 396 | 68.4 | Plus |
Dgri\GH21610-PA | 115 | GH21610-PA | 1..114 | 1..111 | 396 | 68.4 | Plus |
Dgri\GH21611-PA | 110 | GH21611-PA | 1..109 | 1..111 | 369 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG30080-PC | 116 | CG30080-PC | 1..116 | 1..116 | 594 | 100 | Plus |
CG30080-PA | 116 | CG30080-PA | 1..116 | 1..116 | 594 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19582-PA | 107 | GI19582-PA | 1..107 | 1..111 | 354 | 67.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11855-PA | 122 | GL11855-PA | 1..113 | 1..109 | 480 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15631-PA | 122 | GA15631-PA | 1..113 | 1..109 | 480 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20124-PA | 116 | GM20124-PA | 1..116 | 1..116 | 581 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25601-PA | 116 | GD25601-PA | 1..116 | 1..116 | 588 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21157-PA | 114 | GJ21157-PA | 1..114 | 1..111 | 398 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19613-PA | 127 | GK19613-PA | 17..127 | 6..116 | 412 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14136-PA | 116 | GE14136-PA | 1..116 | 1..116 | 571 | 95.7 | Plus |