Clone RE42467 Report

Search the DGRC for RE42467

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:424
Well:67
Vector:pFlc-1
Associated Gene/TranscriptCG30080-RA
Protein status:RE42467.pep: gold
Sequenced Size:2805

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12965 2002-01-01 Sim4 clustering to Release 2
CG30080 2002-04-22 Blastp of sequenced clone
CG30080 2003-01-01 Sim4 clustering to Release 3
CG30080 2008-04-29 Release 5.5 accounting
CG30080 2008-08-15 Release 5.9 accounting
CG30080 2008-12-18 5.12 accounting

Clone Sequence Records

RE42467.complete Sequence

2805 bp (2805 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113469

> RE42467.complete
CGGTTTCCTTAGGAGCGCCATGGAGTGCAGAGCTGTTCCCATTCTACCCA
CCTATTCTCAAGCCTGTGGTACTCCTATGCCCCGGAAAACGTCCCTCTGC
CGTACACTCTTTGATTATGGTCCTCTAAACGATCCGGTGATCATACTCAT
AACACTGGCCGTCGTAGTTGGATCCTTTTGCCTGCTCAGCGGATTCATTT
TACTGTGCGTTGTCTCAAAAGCCTGGCAGGATGAGACTTCCGAGGCCATT
CTCCTAATGGCGATTGGCTTCTTCATCACGGCTTTGTCCTGCGTATCGTG
GAAATTGACGCGAGCTCAACGAATTTCCCAGTTAGTGGATGCCCTCAGCG
TAGATAACCAAACCATTTAGCTTGAAAGTATCTAACGTAAGACATATGAA
AACTACGAGCTTGCAATTAGTTGCAATATACCTGATAAACTCTAAAACGT
TCAACATTAGGGGCTGTCCGAAGTAAGATTGGTCTTAAGTTGTTTTTCCT
ATTCGCTTATGTTAAAGTACATGAATTATCTTATCAATGTCACCTATTTA
ATAATCTTGTTTGCTTTATAATAATATAATAATAATAATATTTAATATTA
ATATTAAGATATTAACCGAGACTCCCTGGTTTCGGACTAACTTAATACAT
AAGTGGGCTAATCAACGTGCCACCGCACGCAAAGGATAACCTCTCATTCG
GTTTTGAAAGATTCAATTGCAGCAAGGCCATCCAAAGTCGAGATCCCATT
TGAATCTCGCTCCCTCCAGTTATCTTCTGATCCCCGAATTCTCCGCACGA
ACTCTCACTGGCAATCAGCACGAATTCCTCACAGCAAATGAATTTCTTTG
AAAGATTGGAATATCAGCATATGTCGCTTTGTTAAATGACCACTCACTTT
AGAATTTGAAAAACAAGGGGCATTCCTCTTTATTTCCAAGTCCTTGGCGG
TCAGCTGGTCCTTTGGCTTCGAAACTATTTTCGCGATGCACTAACATTCT
CTGTAGTGTAAGCATTTGCCTGGCTTCTGATCGTAGGTGGTGCAGTATGT
TTGATCTTGGGGAGGGAAACATTACTACAGGTCACCCCTCATCTGCTGGC
ACTTACAGGGCTTCTCTGTTTGGTTTCCAAAGGGAACTGCTTGTCCGGAT
TGTTGACCAAGTTTAAGGCATATGACCAGGAGCAGCAATTGCAAAACCGT
CATTGCGCCACCAAGCTCTGATATGAACTGAATGCAGAAGACAGTCAAAC
TTCAGAGGAATCTCTGTGGATTATCTGATTACAGGTAGCTTGATTGCATA
TTGCAGTGATTAAATTTACAGAGAAACAAATAATGCTGCAGTGCAGGATA
GAGAACATTAAATATTTATTTTAAATATAAAAAAGGGTGAAGAATGAATG
CGTTGATACCATTTCTGTTAATATCTTTGTTTTCGGCTAACATAATTGTA
TCTTAAAGCTGAATTTTTACTGAATTAAGAGAAGATTTGCTCATCAGTCA
TATTACTAGCATAAAGAGGTTTTCGGTTAGATACACATCTAAAGAGTAAA
CCATATTGCGAATTGTAGGTAACAAGAATTTGATCCTCACTCCATCCTGC
TCTTAAGGACATGACCTACCCCTGGGCATCTGGAGGCGCAAAGAAAATGC
AGCTGCTTGCGCCCCTACCTGAGATCAAATAGTCCTTGATCCTCAGTCCG
AAACGAGAACTCATCGAGAGATGCCACACTTGCAGAACATCGAGCGGGAT
TTTCCCCTTAACTGGACCTTGAATCCCATTCGGATCTCTAGTAGTCTCGC
CGCAAATACTCTTTCCTTATATCGAAAGATCTCGCAAAACATGTGGCGCA
GTTGTATTCAATTTTGCCATAGTCCCAAGTTCCAGCAATATGTTAGATTC
CTCGAGTCCAGTCTCTGTCAGTTTTAAAGAGCAATGATCCAAGAAAATGC
GTCGTCGCCTCGTCTTCAAAACAGATTGCTTTTGATTTGCAATCTTGGCA
CGTTGACGATGCCAAAATTTGTTAGTTGAATTCATTATAGCGATACGCAG
AGAGTCAGTCAACGATCTCGTTCCGAGAGGGGGGTTTCGCTTTGTTGTTT
CAGAGTTCTGAAATACAACAATTTGTGGCATTGTAAAGTGCTCGTAACGC
GATTGGGTTTGGGGCATTTCCAAGTCGGCGGCTGGGAAACTACCCTTGCC
GCAGCAATTCCACCATCCAACCTTCAGTAGGGGGAAAACACCTCGCTTGG
AGCTGCAATAAATTCCGGTCGCTATCAAGACGAGCGTTCAGTAACGTTTC
AAAGCCAGACGCGCTAAGATTGCTAATTCCAAAGCTTCGACCAGTCGACG
AGCATCAGAACATGGAGCACATTCGATTTGTTGACAAAGTCTTTAGAGCC
CTGATCGCCGGCACCCTGCTGCTCCTGATGACCGCCATTTACCGGGAGGA
CAACAACTCCGGATCCCACTACATCCATCCAAGACACGCCATGCAGTAGC
TCCATCGTGGTCTACTAAGATCGATTCAACCTAGTCCGATGCAATCGAAT
CTCTCGAAAGTGCGGCACAAAAACCGGTTGTGTATATTGCCGGCTCGACG
ACATATCGCCATATCAACTAACTGCACAAATAATGTTATGTTATATGTTA
ATAATGTTAATGTTAAGAAACATGTGTAATTATCTATAGCTCATCCCATC
GTAACTAATCTAACTTATGTGCTATAATGTTAATACTTAGAAATTAGTTT
TAGTGTGAAAATATAATATAAAATGCAATGTATATGAACAAAAAAAAAAA
AAAAA

RE42467.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG30080.d 3511 CG30080.d 663..3450 3..2790 13925 99.9 Plus
CG30080-RA 3042 CG30080-RA 194..2981 3..2790 13925 99.9 Plus
CG30080.a 1617 CG30080.a 390..1611 1569..2790 6110 100 Plus
CG30080.a 1617 CG30080.a 6..393 3..390 1940 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11586880..11588527 1896..260 7570 97.6 Minus
chr2R 21145070 chr2R 11585924..11586812 2789..1895 4290 98.9 Minus
chr2R 21145070 chr2R 11588582..11588776 260..66 900 97.4 Minus
chr2R 21145070 chr2R 11588832..11588895 66..3 320 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:56:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15699688..15701324 1896..260 8170 99.9 Minus
2R 25286936 2R 15698725..15699620 2790..1895 4480 100 Minus
2R 25286936 2R 15701379..15701573 260..66 975 100 Minus
2R 25286936 2R 15701629..15701692 66..3 320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15700887..15702523 1896..260 8170 99.9 Minus
2R 25260384 2R 15699924..15700819 2790..1895 4480 100 Minus
2R 25260384 2R 15702578..15702772 260..66 975 100 Minus
2R 25260384 2R 15702828..15702891 66..3 320 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:29:17 has no hits.

RE42467.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:30:16 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11588582..11588775 67..260 97 <- Minus
chr2R 11588832..11588897 1..66 98   Minus
chr2R 11585924..11586810 1897..2789 98 <- Minus
chr2R 11586880..11588171 616..1896 95 == Minus
chr2R 11588224..11588526 261..563 97 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:16:35 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RA 1..351 20..370 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:57:55 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RC 1..351 20..370 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:03:03 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RA 1..351 20..370 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:51:15 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RA 1..351 20..370 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:50 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RA 1..351 20..370 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:37:58 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RA 1..2789 1..2789 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:57:54 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RA 1..2789 1..2789 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:03 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG42662-RB 3..2791 1..2789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:51:16 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RA 1..2789 1..2789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:50 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
CG30080-RA 3..2791 1..2789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:16 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15698726..15699618 1897..2789 100 <- Minus
2R 15699688..15701323 261..1896 99 <- Minus
2R 15701379..15701572 67..260 100 <- Minus
2R 15701629..15701694 1..66 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:16 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15698726..15699618 1897..2789 100 <- Minus
2R 15699688..15701323 261..1896 99 <- Minus
2R 15701379..15701572 67..260 100 <- Minus
2R 15701629..15701694 1..66 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:16 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15698726..15699618 1897..2789 100 <- Minus
2R 15699688..15701323 261..1896 99 <- Minus
2R 15701379..15701572 67..260 100 <- Minus
2R 15701629..15701694 1..66 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:03 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11586231..11587123 1897..2789 100 <- Minus
arm_2R 11587193..11588828 261..1896 99 <- Minus
arm_2R 11588884..11589077 67..260 100 <- Minus
arm_2R 11589134..11589199 1..66 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:23:12 Download gff for RE42467.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15699925..15700817 1897..2789 100 <- Minus
2R 15700887..15702522 261..1896 99 <- Minus
2R 15702578..15702771 67..260 100 <- Minus
2R 15702828..15702893 1..66 98   Minus

RE42467.hyp Sequence

Translation from 0 to 369

> RE42467.hyp
SFLRSAMECRAVPILPTYSQACGTPMPRKTSLCRTLFDYGPLNDPVIILI
TLAVVVGSFCLLSGFILLCVVSKAWQDETSEAILLMAIGFFITALSCVSW
KLTRAQRISQLVDALSVDNQTI*

RE42467.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG30080-PC 116 CG30080-PC 1..116 7..122 594 100 Plus
CG30080-PA 116 CG30080-PA 1..116 7..122 594 100 Plus

RE42467.pep Sequence

Translation from 19 to 369

> RE42467.pep
MECRAVPILPTYSQACGTPMPRKTSLCRTLFDYGPLNDPVIILITLAVVV
GSFCLLSGFILLCVVSKAWQDETSEAILLMAIGFFITALSCVSWKLTRAQ
RISQLVDALSVDNQTI*

RE42467.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13373-PA 112 GF13373-PA 1..108 1..107 507 90.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22336-PA 116 GG22336-PA 1..116 1..116 569 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22456-PA 115 GH22456-PA 1..114 1..111 396 68.4 Plus
Dgri\GH21610-PA 115 GH21610-PA 1..114 1..111 396 68.4 Plus
Dgri\GH21611-PA 110 GH21611-PA 1..109 1..111 369 66.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30080-PC 116 CG30080-PC 1..116 1..116 594 100 Plus
CG30080-PA 116 CG30080-PA 1..116 1..116 594 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19582-PA 107 GI19582-PA 1..107 1..111 354 67.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11855-PA 122 GL11855-PA 1..113 1..109 480 81.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15631-PA 122 GA15631-PA 1..113 1..109 480 81.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20124-PA 116 GM20124-PA 1..116 1..116 581 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25601-PA 116 GD25601-PA 1..116 1..116 588 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21157-PA 114 GJ21157-PA 1..114 1..111 398 68.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19613-PA 127 GK19613-PA 17..127 6..116 412 69.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14136-PA 116 GE14136-PA 1..116 1..116 571 95.7 Plus