BDGP Sequence Production Resources |
Search the DGRC for RE42475
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 424 |
Well: | 75 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31997-RA |
Protein status: | RE42475.pep: gold |
Sequenced Size: | 675 |
Gene | Date | Evidence |
---|---|---|
CG31997 | 2001-12-14 | Blastp of sequenced clone |
CG1651 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31997 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31997 | 2008-04-29 | Release 5.5 accounting |
CG31997 | 2008-08-15 | Release 5.9 accounting |
CG31997 | 2008-12-18 | 5.12 accounting |
675 bp (675 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071386
> RE42475.complete TGGGTGTGAACTTTCGCTTCATTTAGGCTGGTTAGGTGGTTAATTCCATT TGTCTTCGTTCTTTTGTATTATTTTTACAAAGCGATAATATTTTAATCGT TTATGATTATTACAATATAACAAAAAGTTAACATCTTTGGAATCTTAAAA ATGAGTTTTCATTTTGCTGTACTGACCCTTATTTTAACAGCCTTCACAGT TTCTCTGTGTGCTGAACAAAAAATTACAAAGAGTGACGCAGGTGAAATAC GAATTTTCAAACGTCTTATTCCTGCCGATGTTCTACGAGATTTTCCGGGA ATGTGCTTTGCTTCAACTCGATGTGCCACTGTTGAGCCTGGAAAGTCGTG GGACCTTACTCCATTCTGCGGTCGATCTACTTGTGTTCAAAATGAGGAAA ATGATGCAAAGCTATTCGAACTCGTAGAAGACTGCGGCCCATTGCCACTG GCGAATGACAAATGTAAATTGGACACAGAGAAGACTAATAAAACCGCATC GTTTCCTTATTGCTGCCCCATCTTTACATGTGACCCCGGTGTTAAATTGG AATACCCCGAGATCGGAAAGGATAATGACAAAAAGAATTCTGAGTGATTC AAAACAAATATATTATGAAAACGTCTGTCAATACAATAAAAACATTTGTT GCTTTAGTCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31997-RA | 1146 | CG31997-RA | 369..1029 | 4..664 | 3305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr4 | 1351717 | chr4 | 176399..176684 | 289..4 | 1430 | 100 | Minus |
chr4 | 1351717 | chr4 | 175351..175599 | 659..411 | 1245 | 100 | Minus |
chr4 | 1351717 | chr4 | 175660..175783 | 411..288 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
1360 | 3409 | 1360 1360 3409bp | 2430..2499 | 131..59 | 106 | 66.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 175351..175599 | 411..659 | 100 | <- | Minus |
chr4 | 175661..175781 | 290..410 | 100 | <- | Minus |
chr4 | 176399..176686 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 1..447 | 151..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 1..447 | 151..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 1..447 | 151..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 1..447 | 151..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 1..447 | 151..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 3..658 | 4..659 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 3..658 | 4..659 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 8..666 | 1..659 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 3..658 | 4..659 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31997-RA | 8..666 | 1..659 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 154717..154965 | 411..659 | 100 | <- | Minus |
4 | 155027..155147 | 290..410 | 100 | <- | Minus |
4 | 155765..156052 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 154717..154965 | 411..659 | 100 | <- | Minus |
4 | 155027..155147 | 290..410 | 100 | <- | Minus |
4 | 155765..156052 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 154717..154965 | 411..659 | 100 | <- | Minus |
4 | 155027..155147 | 290..410 | 100 | <- | Minus |
4 | 155765..156052 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 175343..175591 | 411..659 | 100 | <- | Minus |
arm_4 | 175653..175773 | 290..410 | 100 | <- | Minus |
arm_4 | 176391..176678 | 1..289 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 154717..154965 | 411..659 | 100 | <- | Minus |
4 | 155027..155147 | 290..410 | 100 | <- | Minus |
4 | 155765..156052 | 1..289 | 99 | Minus |
Translation from 150 to 596
> RE42475.hyp MSFHFAVLTLILTAFTVSLCAEQKITKSDAGEIRIFKRLIPADVLRDFPG MCFASTRCATVEPGKSWDLTPFCGRSTCVQNEENDAKLFELVEDCGPLPL ANDKCKLDTEKTNKTASFPYCCPIFTCDPGVKLEYPEIGKDNDKKNSE*
Translation from 150 to 596
> RE42475.pep MSFHFAVLTLILTAFTVSLCAEQKITKSDAGEIRIFKRLIPADVLRDFPG MCFASTRCATVEPGKSWDLTPFCGRSTCVQNEENDAKLFELVEDCGPLPL ANDKCKLDTEKTNKTASFPYCCPIFTCDPGVKLEYPEIGKDNDKKNSE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19044-PA | 150 | GF19044-PA | 5..148 | 3..146 | 591 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16462-PA | 151 | GG16462-PA | 1..151 | 1..148 | 709 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23991-PA | 157 | GH23991-PA | 12..154 | 7..145 | 539 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31997-PB | 148 | CG31997-PB | 1..148 | 1..148 | 802 | 100 | Plus |
CG31997-PA | 148 | CG31997-PA | 1..148 | 1..148 | 802 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14118-PA | 143 | GI14118-PA | 8..133 | 16..136 | 514 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16601-PA | 138 | GA16601-PA | 8..136 | 21..146 | 556 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23232-PA | 148 | GM23232-PA | 1..148 | 1..148 | 738 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24391-PA | 148 | GD24391-PA | 1..148 | 1..148 | 738 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14631-PA | 160 | GJ14631-PA | 43..150 | 31..136 | 516 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13665-PA | 280 | GK13665-PA | 24..139 | 21..130 | 474 | 76.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14528-PA | 151 | GE14528-PA | 1..151 | 1..148 | 709 | 89.4 | Plus |