BDGP Sequence Production Resources |
Search the DGRC for RE42502
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 425 |
Well: | 2 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Nnf1a-RA |
Protein status: | RE42502.pep: gold |
Preliminary Size: | 585 |
Sequenced Size: | 667 |
Gene | Date | Evidence |
---|---|---|
CG13434 | 2001-12-14 | Blastp of sequenced clone |
CG13434 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13434 | 2003-01-01 | Sim4 clustering to Release 3 |
Nnf1a | 2008-04-29 | Release 5.5 accounting |
Nnf1a | 2008-08-15 | Release 5.9 accounting |
Nnf1a | 2008-12-18 | 5.12 accounting |
667 bp (667 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071387
> RE42502.complete GTTTGCAATTTGAATTTACTAACAAATTATTTCAATGGAGGATTCGGAAG CCGCATTTAAACGCCACGAGGGTGTGGGACCAAAGGTGAAACAGGCCTAC GAGGAAGCCATTAAACAAATCTTTGCCGACTTGAGCTGCGCAGATCTGCA AGCGTGGGATGCCATTTACCAGGAGCACGAGCAATCCGCTCTGGACACCG AAAGCATCGTAGATCGCACTCGCAGTCTGATGACCAAGGTTGTGCTCGAA ATGAACCGATGCTTTTTCGCCAGCAACGATGTGCCAAATAAGTTGCAAAC TTTGGAAATGCTCAAGGAACATTTCGCTGCCTACGAGGGCAAGAAATGGA ACGTGAACACTGCAGCACCCGATAAACTAACTCGGCCGCTGCGCATGCGA TTTTTGGACTTCAGCGTGGAATTCATGGAGCAGCAACTGGCCTCTCAGGC AAAAGAACTTGAGATTGCTATGGCCAAGAGCAATGCCAATCGCGAGCGAC TCCAACATGTCCATGACAAGCGCCTGAAATTGACTGTCCAAATGGAGCAG CAATTGTCGCAGTACGAGAAAGTTAAGACAGAACTTATTAAACTAGGCGA AGCATTGAACGACTTCTGACAAACTTAAATGCAATAAATAAATAAAATAC TAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 16473560..16473775 | 349..134 | 1080 | 100 | Minus |
chr2R | 21145070 | chr2R | 16472979..16473168 | 651..462 | 950 | 100 | Minus |
chr2R | 21145070 | chr2R | 16473830..16473964 | 135..1 | 660 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 16473372..16473487 | 463..348 | 565 | 99.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 20586803..20587018 | 349..134 | 1080 | 100 | Minus |
2R | 25286936 | 2R | 20586221..20586411 | 652..462 | 955 | 100 | Minus |
2R | 25286936 | 2R | 20587073..20587207 | 135..1 | 660 | 99.3 | Minus |
2R | 25286936 | 2R | 20586615..20586730 | 463..348 | 565 | 99.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 20588002..20588217 | 349..134 | 1080 | 100 | Minus |
2R | 25260384 | 2R | 20587420..20587610 | 652..462 | 955 | 100 | Minus |
2R | 25260384 | 2R | 20588272..20588406 | 135..1 | 660 | 99.2 | Minus |
2R | 25260384 | 2R | 20587814..20587929 | 463..348 | 565 | 99.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 5107..5137 | 619..649 | 110 | 83.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16472979..16473166 | 464..651 | 100 | <- | Minus |
chr2R | 16473372..16473486 | 349..463 | 99 | <- | Minus |
chr2R | 16473561..16473773 | 136..348 | 100 | <- | Minus |
chr2R | 16473830..16473964 | 1..135 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 1..585 | 35..619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 1..585 | 35..619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 1..585 | 35..619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 1..585 | 35..619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 1..585 | 35..619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 1..651 | 1..651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 47..697 | 1..651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 32..682 | 1..651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 1..651 | 1..651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nnf1a-RA | 32..682 | 1..651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20586615..20586729 | 349..463 | 99 | <- | Minus |
2R | 20586222..20586409 | 464..651 | 100 | <- | Minus |
2R | 20586804..20587016 | 136..348 | 100 | <- | Minus |
2R | 20587073..20587207 | 1..135 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20586615..20586729 | 349..463 | 99 | <- | Minus |
2R | 20586222..20586409 | 464..651 | 100 | <- | Minus |
2R | 20586804..20587016 | 136..348 | 100 | <- | Minus |
2R | 20587073..20587207 | 1..135 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20586615..20586729 | 349..463 | 99 | <- | Minus |
2R | 20586222..20586409 | 464..651 | 100 | <- | Minus |
2R | 20586804..20587016 | 136..348 | 100 | <- | Minus |
2R | 20587073..20587207 | 1..135 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16474120..16474234 | 349..463 | 99 | <- | Minus |
arm_2R | 16474309..16474521 | 136..348 | 100 | <- | Minus |
arm_2R | 16474578..16474712 | 1..135 | 99 | Minus | |
arm_2R | 16473727..16473914 | 464..651 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20588003..20588215 | 136..348 | 100 | <- | Minus |
2R | 20588272..20588406 | 1..135 | 99 | Minus | |
2R | 20587421..20587608 | 464..651 | 100 | <- | Minus |
2R | 20587814..20587928 | 349..463 | 99 | <- | Minus |
Translation from 34 to 618
> RE42502.pep MEDSEAAFKRHEGVGPKVKQAYEEAIKQIFADLSCADLQAWDAIYQEHEQ SALDTESIVDRTRSLMTKVVLEMNRCFFASNDVPNKLQTLEMLKEHFAAY EGKKWNVNTAAPDKLTRPLRMRFLDFSVEFMEQQLASQAKELEIAMAKSN ANRERLQHVHDKRLKLTVQMEQQLSQYEKVKTELIKLGEALNDF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12757-PA | 208 | GF12757-PA | 13..201 | 5..193 | 448 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20848-PA | 189 | GG20848-PA | 1..189 | 1..189 | 842 | 84.1 | Plus |
Dere\GG24745-PA | 204 | GG24745-PA | 6..198 | 2..194 | 562 | 54.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22114-PA | 203 | GH22114-PA | 15..196 | 5..191 | 380 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nnf1a-PA | 194 | CG13434-PA | 1..194 | 1..194 | 986 | 100 | Plus |
Nnf1b-PA | 204 | CG31658-PA | 6..197 | 2..193 | 574 | 57.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19249-PA | 164 | GI19249-PA | 6..155 | 38..187 | 350 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17439-PA | 217 | GL17439-PA | 11..207 | 2..193 | 487 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24826-PA | 217 | GA24826-PA | 11..207 | 2..193 | 486 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19776-PA | 194 | GM19776-PA | 1..194 | 1..194 | 958 | 90.7 | Plus |
Dsec\GM16767-PA | 200 | GM16767-PA | 6..197 | 2..193 | 579 | 56.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25267-PA | 194 | GD25267-PA | 1..194 | 1..194 | 969 | 92.8 | Plus |
Dsim\GD23046-PA | 200 | GD23046-PA | 6..197 | 2..193 | 598 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20326-PA | 206 | GJ20326-PA | 15..203 | 5..193 | 434 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21831-PA | 199 | GK21831-PA | 7..198 | 3..194 | 445 | 44.3 | Plus |
Translation from 34 to 618
> RE42502.hyp MEDSEAAFKRHEGVGPKVKQAYEEAIKQIFADLSCADLQAWDAIYQEHEQ SALDTESIVDRTRSLMTKVVLEMNRCFFASNDVPNKLQTLEMLKEHFAAY EGKKWNVNTAAPDKLTRPLRMRFLDFSVEFMEQQLASQAKELEIAMAKSN ANRERLQHVHDKRLKLTVQMEQQLSQYEKVKTELIKLGEALNDF*