Clone RE42508 Report

Search the DGRC for RE42508

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:425
Well:8
Vector:pFlc-1
Associated Gene/TranscriptRab21-RA
Protein status:RE42508.pep: gold
Preliminary Size:971
Sequenced Size:1075

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17515 2002-01-01 Sim4 clustering to Release 2
CG40304 2002-06-06 Blastp of sequenced clone
Rab21 2008-04-29 Release 5.5 accounting
Rab21 2008-08-15 Release 5.9 accounting
Rab21 2008-12-18 5.12 accounting

Clone Sequence Records

RE42508.complete Sequence

1075 bp (1075 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119634

> RE42508.complete
GGGTGCCATTACAATAGTGCTGGTAGACAGCCACACTGGCGGTCTCGTAA
AAACCTAATCTTTTCGATTACCTCTTGTTTTTTTTTTGTTTTTCCGTGTC
CTCTGAAAACTGATGCGTATCAAGGTAGGACACCTAGCTATTGGGAAACC
ACAATGAGCTCGAGCAGAGCGAGGAACGGCCCCACGCTTAATTTCAAGGC
GGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCGCTGGTGCTGCGCT
ACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCACCCTGCAGGCTTCC
TTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAAGGGCGCAGTTGAA
TATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCCCTGGGACCCATCT
ACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGACATAACGGACCGA
GACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGCTCCGGCAAATGCG
CGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAGACTGATTTGGAGG
AACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATATGCGCGCACGGTT
GGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACGAGGGGGTGGCTGA
GCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAGTTGAGCCAACGGC
AACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGATACGGATAACCTT
AACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAGATCCTGCGGGCCA
GCGGTCCTGTTGCGGCATTTAGCCGTTCCCATTGTGATAGTAATCATAAC
TATAAAATAGTAGACCTTTAACCGATGTTGATCTTGTGTATATATTATAC
ATAGATAGATATAAATATAAATACGCGTATTTTTATTATTCCCTATTATG
GATCTTTAAAATCCTCACACATTTTTGTTTATTAATAAATATAAATATGT
ATTTCATTCGATTTTCTTGCCCTTCCTGAGCGCCCAGTAATAAACAATCT
TGTACTTGCAAAAAAAAAAAAAAAA

RE42508.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 1210 Rab21-RC 115..1172 3..1060 5275 99.9 Plus
Rab21.a 1111 Rab21.a 138..1073 125..1060 4665 99.8 Plus
Rab21-RA 1077 Rab21-RA 234..1077 216..1059 4220 100 Plus
Rab21-RA 1077 Rab21-RA 1..176 44..219 865 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 22408198..22409035 1059..216 4095 99.3 Minus
chrX 22417052 chrX 22409093..22409309 219..3 1070 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:56:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23012139..23012983 1060..216 4225 100 Minus
X 23542271 X 23013041..23013257 219..3 1070 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22997231..22998075 1060..216 4225 100 Minus
X 23527363 X 22998133..22998349 219..3 1070 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 12:23:21 has no hits.

RE42508.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:24:22 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 22408198..22409033 218..1059 99 <- Minus
chrX 22409095..22409311 1..217 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:16:42 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..669 154..822 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:16 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..669 154..822 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:15:34 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 1..669 154..822 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:30 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..669 154..822 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:33 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 1..669 154..822 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:59:56 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..1059 2..1059 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:16 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..1059 2..1059 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:15:34 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 6..1064 1..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:30 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..1059 2..1059 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:33 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 6..1064 1..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:22 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
X 23013043..23013259 1..217 99   Minus
X 23012140..23012981 218..1059 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:22 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
X 23013043..23013259 1..217 99   Minus
X 23012140..23012981 218..1059 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:24:22 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
X 23013043..23013259 1..217 99   Minus
X 23012140..23012981 218..1059 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:15:34 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22414879..22415095 1..217 99   Minus
arm_X 22413976..22414817 218..1059 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:11 Download gff for RE42508.complete
Subject Subject Range Query Range Percent Splice Strand
X 22997232..22998073 218..1059 100 <- Minus
X 22998135..22998351 1..217 99   Minus

RE42508.hyp Sequence

Translation from 0 to 821

> RE42508.hyp
ECHYNSAGRQPHWRSRKNLIFSITSCFFFVFPCPLKTDAYQGRTPSYWET
TMSSSRTRNGPTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQAS
FVSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDR
DSFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTV
GAQYVETSAKENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNL
NNSDDSEAPDPGDPAGQRSCCGI*

RE42508.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-PC 222 CG17515-PC 1..222 52..273 1141 100 Plus
Rab21-PD 222 CG17515-PD 1..222 52..273 1141 100 Plus
Rab21-PA 189 CG17515-PA 1..189 85..273 974 100 Plus
Rab5-PI 219 CG3664-PI 15..183 50..219 388 44.7 Plus
Rab5-PH 219 CG3664-PH 15..183 50..219 388 44.7 Plus

RE42508.pep Sequence

Translation from 153 to 821

> RE42508.pep
MSSSRARNGPTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASF
VSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRD
SFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVG
AQYVETSAKENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLN
NSDDSEAPDPGDPAGQRSCCGI*

RE42508.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22152-PA 225 GF22152-PA 5..225 4..222 1013 85.5 Plus
Dana\GF15280-PA 219 GF15280-PA 30..183 14..168 400 47.7 Plus
Dana\GF23429-PA 208 GF23429-PA 1..166 1..168 376 44.6 Plus
Dana\GF11093-PA 220 GF11093-PA 22..194 14..188 369 39.4 Plus
Dana\GF20241-PA 204 GF20241-PA 2..204 6..221 360 34.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17497-PA 222 GG17497-PA 1..222 1..222 1133 95.5 Plus
Dere\GG24527-PA 219 GG24527-PA 30..183 14..168 399 47.7 Plus
Dere\GG10272-PA 208 GG10272-PA 1..166 1..168 376 44.6 Plus
Dere\GG22724-PA 220 GG22724-PA 22..194 14..188 369 39.4 Plus
Dere\GG24366-PA 214 GG24366-PA 12..194 14..193 348 39.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12858-PA 229 GH12858-PA 1..229 1..222 861 72.9 Plus
Dgri\GH13785-PA 216 GH13785-PA 29..182 14..168 400 47.7 Plus
Dgri\GH10191-PA 208 GH10191-PA 1..166 1..168 376 44.6 Plus
Dgri\GH24197-PA 220 GH24197-PA 22..194 14..188 369 39.4 Plus
Dgri\GH20651-PA 259 GH20651-PA 7..195 15..205 357 37.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-PC 222 CG17515-PC 1..222 1..222 1136 99.5 Plus
Rab21-PD 222 CG17515-PD 1..222 1..222 1136 99.5 Plus
Rab21-PA 189 CG17515-PA 1..189 34..222 974 100 Plus
Rab5-PI 219 CG3664-PI 20..183 8..168 384 46.7 Plus
Rab5-PH 219 CG3664-PH 20..183 8..168 384 46.7 Plus
Rab5-PG 219 CG3664-PG 20..183 8..168 384 46.7 Plus
Rab5-PE 219 CG3664-PE 20..183 8..168 384 46.7 Plus
Rab5-PC 219 CG3664-PC 20..183 8..168 384 46.7 Plus
Rab5-PD 219 CG3664-PD 20..183 8..168 384 46.7 Plus
Rab5-PF 219 CG3664-PF 20..183 8..168 384 46.7 Plus
Rab5-PB 219 CG3664-PB 20..183 8..168 384 46.7 Plus
Rab5-PA 219 CG3664-PA 20..183 8..168 384 46.7 Plus
Rab6-PB 208 CG6601-PB 2..166 3..168 362 44 Plus
Rab6-PA 208 CG6601-PA 2..166 3..168 362 44 Plus
Rab3-PB 220 CG7576-PB 22..194 14..188 357 39.4 Plus
Rab3-PA 220 CG7576-PA 22..194 14..188 357 39.4 Plus
Rab11-PA 214 CG5771-PA 12..194 14..193 344 39.1 Plus
Rab11-PB 214 CG5771-PB 12..194 14..193 344 39.1 Plus
Rab1-PA 205 CG3320-PA 12..165 14..168 339 41.3 Plus
Rab10-PA 204 CG17060-PA 8..203 12..220 338 34 Plus
Rab8-PC 207 CG8287-PC 9..182 14..188 335 37.7 Plus
Rab8-PA 207 CG8287-PA 9..182 14..188 335 37.7 Plus
Rab35-PB 201 CG9575-PB 9..200 14..219 331 34 Plus
Rab35-PD 201 CG9575-PD 9..200 14..219 331 34 Plus
Rab35-PA 201 CG9575-PA 9..200 14..219 331 34 Plus
Rab19-PB 219 CG7062-PP3-RB 22..191 14..187 326 40.3 Plus
Rab19-PA 219 CG7062-PA 22..191 14..187 326 40.3 Plus
RabX1-PA 261 CG3870-PA 7..195 15..203 325 36.1 Plus
Rab2-PB 213 CG3269-PB 7..173 14..181 324 37.5 Plus
Rab2-PA 213 CG3269-PA 7..173 14..181 324 37.5 Plus
Rab9Fb-PA 214 CG32670-PA 8..214 14..220 324 35 Plus
Rab35-PC 190 CG9575-PC 4..189 20..219 321 34.5 Plus
Rab14-PD 215 CG4212-PD 12..215 14..219 318 35.1 Plus
Rab14-PA 215 CG4212-PA 12..215 14..219 318 35.1 Plus
Rab14-PB 239 CG4212-PB 36..239 14..219 318 35.1 Plus
Rab4-PA 213 CG4921-PA 9..179 14..185 317 39.5 Plus
Rab4-PB 213 CG4921-PB 9..179 14..185 317 39.5 Plus
Rab18-PA 197 CG3129-PA 7..159 15..169 309 42.9 Plus
RabX2-PA 195 CG2885-PA 8..195 14..203 304 33.7 Plus
Rab23-PA 268 CG2108-PA 36..207 12..181 299 37.9 Plus
RabX4-PA 213 CG31118-PA 9..193 14..211 286 31.2 Plus
Rab7-PC 207 CG5915-PC 10..204 15..201 285 36 Plus
Rab7-PB 207 CG5915-PB 10..204 15..201 285 36 Plus
Rab7-PA 207 CG5915-PA 10..204 15..201 285 36 Plus
Rab39-PB 218 CG12156-PB 10..173 14..173 285 37.8 Plus
Rab39-PA 218 CG12156-PA 10..173 14..173 285 37.8 Plus
Rab30-PD 223 CG9100-PD 8..210 14..221 282 33.3 Plus
Rab30-PC 223 CG9100-PC 8..210 14..221 282 33.3 Plus
Rab30-PB 223 CG9100-PB 8..210 14..221 282 33.3 Plus
Rab30-PA 223 CG9100-PA 8..210 14..221 282 33.3 Plus
Rala-PB 197 CG2849-PB 2..182 3..185 277 37 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14949-PA 222 GI14949-PA 1..222 1..222 869 75.8 Plus
Dmoj\GI17188-PA 216 GI17188-PA 29..182 14..168 400 47.7 Plus
Dmoj\GI14260-PA 208 GI14260-PA 1..166 1..168 377 44.6 Plus
Dmoj\GI20173-PA 220 GI20173-PA 22..194 14..188 369 39.4 Plus
Dmoj\GI19016-PA 259 GI19016-PA 7..195 15..205 356 38.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16463-PA 223 GL16463-PA 1..223 1..222 913 77.3 Plus
Dper\GL19400-PA 218 GL19400-PA 29..182 14..168 399 47.7 Plus
Dper\GL18897-PA 208 GL18897-PA 1..166 1..168 376 44.6 Plus
Dper\GL17187-PA 220 GL17187-PA 22..194 14..188 369 39.4 Plus
Dper\GL21786-PA 214 GL21786-PA 12..194 14..193 348 39.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22589-PA 224 GA22589-PA 1..224 1..222 910 78.1 Plus
Dpse\GA17598-PA 218 GA17598-PA 29..182 14..168 399 47.7 Plus
Dpse\GA19714-PA 208 GA19714-PA 1..166 1..168 376 44.6 Plus
Dpse\GA20450-PA 220 GA20450-PA 22..194 14..188 369 39.4 Plus
Dpse\GA26078-PA 204 GA26078-PA 2..204 6..221 356 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10050-PA 224 GM10050-PA 1..224 1..222 1122 94.6 Plus
Dsec\GM18235-PA 219 GM18235-PA 30..183 14..168 399 47.7 Plus
Dsec\GM26307-PA 208 GM26307-PA 1..166 1..168 376 44.6 Plus
Dsec\GM20500-PA 220 GM20500-PA 22..194 14..188 369 39.4 Plus
Dsec\GM15065-PA 214 GM15065-PA 12..194 14..193 348 39.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22429-PA 83 GD22429-PA 1..83 1..83 422 94 Plus
Dsim\GD22841-PA 219 GD22841-PA 30..183 14..168 399 47.7 Plus
Dsim\GD19996-PA 205 GD19996-PA 12..165 14..168 346 41.3 Plus
Dsim\GD19397-PA 198 GD19397-PA 12..186 14..188 340 40.3 Plus
Dsim\GD12244-PA 207 GD12244-PA 9..182 14..188 340 37.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18919-PA 229 GJ18919-PA 1..229 1..222 892 75.1 Plus
Dvir\GJ22226-PA 216 GJ22226-PA 29..182 14..168 400 47.7 Plus
Dvir\GJ20647-PA 208 GJ20647-PA 1..166 1..168 376 44.6 Plus
Dvir\GJ20130-PA 220 GJ20130-PA 22..194 14..188 369 39.4 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 2..204 6..221 358 33.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20025-PA 230 GK20025-PA 1..230 1..222 844 70.1 Plus
Dwil\GK15003-PA 223 GK15003-PA 1..223 1..222 720 63.2 Plus
Dwil\GK14984-PA 220 GK14984-PA 30..183 14..168 399 47.7 Plus
Dwil\GK21078-PA 208 GK21078-PA 1..166 1..168 376 44.6 Plus
Dwil\GK19661-PA 220 GK19661-PA 22..194 14..188 369 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15254-PA 222 GE15254-PA 1..222 1..222 1128 94.6 Plus
Dyak\GE15124-PA 219 GE15124-PA 30..183 14..168 399 47.7 Plus
Dyak\GE12402-PA 208 GE12402-PA 1..166 1..168 376 44.6 Plus
Dyak\GE13081-PA 220 GE13081-PA 22..194 14..188 369 39.4 Plus
Dyak\Rab1-PA 205 GE25003-PA 12..165 14..168 346 41.3 Plus