BDGP Sequence Production Resources |
Search the DGRC for RE42624
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 426 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Den1-RA |
Protein status: | RE42624.pep: gold |
Preliminary Size: | 920 |
Sequenced Size: | 1260 |
Gene | Date | Evidence |
---|---|---|
CG8493 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8493 | 2002-06-07 | Blastp of sequenced clone |
CG8493 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8493 | 2008-04-29 | Release 5.5 accounting |
CG8493 | 2008-08-15 | Release 5.9 accounting |
CG8493 | 2008-12-18 | 5.12 accounting |
1260 bp (1260 high quality bases) assembled on 2002-06-07
GenBank Submission: AY119635
> RE42624.complete AGCCCAAGCCAGAAAGTAAGATATACAGTACGGCGACTTATTATTTGAGC GGAAAAGCGAAAAAACTATTCAGAGTGTTGTGTAACTTTTTATATTAGTG AAAATATCAGTTGGTAAATTCAAGTTATTTGCTCCCAAACAGCCAAATAA ATGGTAATACGCGAGGAGTGTCCAAAGAACGGACAAAAAGCGAGGTCGCG ACTTCGAGGAGGAGGAGTAGCCATTTTTCGTGGCAACATACACGCCAGAA CCAGAATACGAATCGCCGGCGCCCCAGATTCACCAACAATAGCTTCCATA CCAAAATGGGCAGCAACTCCAAGGCAGACCCCATCTCGCTGACCTTCCAC GACTCCTGCCTGCGGATGTCCGACGTCCAGTTGCTCCACGGCCCGCACTG GCTGAACGACCAGATCCTGAGCTTCTACTACGAATACCTGGCCCACATGA AGTACAAGACCAATGCGGATCTGCACTTCATTGCGCCGGAGATTACGCAG TGTATGAAGTACATGGGCGACCAGGAGCTGAAGCAGCTTCTCGACCAGAG CAACACCACTGGCAAGCCCTTTATCTTCTTCGCGCTGAACGACAACGAAA CCACCGATGCTGGTGGCAGCCACTGGTCACTGTTGGTCTTCTCGCGTCCG GAGAAGACCTTCTATCACTTCGATTCGTATGGGAACAACAACACGGGCAA CTCCCTGGAGCTGATGAACAAGATCAAGGACCTGCTTGGCGTCCGAATGG CCAAATTCCGGCCCATGCGCTGCCTACAGCAGGCGAACGGCTACGACTGT GGCATCCATGTTATCTGCATGACCGACCACATTGCCGATTACCTAAACAG ATACGAGGTGATCGACGGACTGCCGTCGCTGCACATCGACACCGTGAAGG CGAAGCGCACCGAGCTACTGAAACTCATCCTGTCGCTGGGCGGCAAGGGC TAGAGGCTAGCGAGGATTGCCCTGCCGAACCGCCCACAGCCGAGTAGTTT TTAAGTGACCAAATTACGAATGTAACTCGTTGCCGAAGAATGAGAGGAGC ATCGGAATTACATATGTGAATACGATATCCATGATATCGCTAGTTGTAGT GGGTTTAGTTTTCCTTGCCGAATGAAAATGTTTAAAAAACAAAAGCAAAC TAAAAGCAATTGAGGCGGTGAGTCGGCATATTTTTAAGGTTGGTCTTTCA AAATAAAGATTTGTTTAGCCACAAAACGCGTTGGCTTCGAATCCAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Den1-RA | 1303 | Den1-RA | 55..1296 | 1..1242 | 6195 | 99.9 | Plus |
Den1.a | 1196 | Den1.a | 90..1189 | 143..1242 | 5500 | 100 | Plus |
Den1-RC | 1166 | Den1-RC | 149..1159 | 232..1242 | 5055 | 100 | Plus |
Den1.a | 1196 | Den1.a | 9..89 | 1..81 | 390 | 98.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8225069..8225300 | 1..232 | 99 | -> | Plus |
chr2R | 8225792..8226803 | 233..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8493-RB | 1..648 | 306..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Den1-RC | 29..750 | 232..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Den1-RC | 29..750 | 232..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8493-RB | 1..648 | 306..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Den1-RC | 29..750 | 232..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8493-RA | 9..1252 | 1..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Den1-RA | 9..1252 | 1..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Den1-RA | 14..1257 | 1..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8493-RA | 9..1252 | 1..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Den1-RA | 14..1257 | 1..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12337810..12338041 | 1..232 | 99 | -> | Plus |
2R | 12338533..12339544 | 233..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12337810..12338041 | 1..232 | 99 | -> | Plus |
2R | 12338533..12339544 | 233..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12337810..12338041 | 1..232 | 99 | -> | Plus |
2R | 12338533..12339544 | 233..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8225315..8225546 | 1..232 | 99 | -> | Plus |
arm_2R | 8226038..8227049 | 233..1244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12339009..12339240 | 1..232 | 99 | -> | Plus |
2R | 12339732..12340743 | 233..1244 | 99 | Plus |
Translation from 305 to 952
> RE42624.pep MGSNSKADPISLTFHDSCLRMSDVQLLHGPHWLNDQILSFYYEYLAHMKY KTNADLHFIAPEITQCMKYMGDQELKQLLDQSNTTGKPFIFFALNDNETT DAGGSHWSLLVFSRPEKTFYHFDSYGNNNTGNSLELMNKIKDLLGVRMAK FRPMRCLQQANGYDCGIHVICMTDHIADYLNRYEVIDGLPSLHIDTVKAK RTELLKLILSLGGKG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19818-PA | 215 | GF19818-PA | 1..215 | 1..215 | 1086 | 91.2 | Plus |
Dana\GF21854-PA | 318 | GF21854-PA | 98..310 | 3..213 | 318 | 34.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20277-PA | 215 | GG20277-PA | 1..215 | 1..215 | 1132 | 96.7 | Plus |
Dere\GG17555-PA | 319 | GG17555-PA | 90..311 | 2..213 | 342 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22812-PA | 212 | GH22812-PA | 2..211 | 5..214 | 970 | 82.9 | Plus |
Dgri\GH22976-PA | 212 | GH22976-PA | 2..211 | 5..214 | 767 | 65.2 | Plus |
Dgri\GH24159-PA | 318 | GH24159-PA | 97..311 | 1..211 | 579 | 48.4 | Plus |
Dgri\GH12897-PA | 328 | GH12897-PA | 113..326 | 3..215 | 524 | 48.4 | Plus |
Dgri\GH16114-PA | 285 | GH16114-PA | 46..244 | 10..213 | 349 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Den1-PA | 215 | CG8493-PA | 1..215 | 1..215 | 1156 | 100 | Plus |
Den1-PC | 249 | CG8493-PC | 35..249 | 1..215 | 1156 | 100 | Plus |
CG1503-PB | 307 | CG1503-PB | 88..299 | 10..213 | 324 | 35.8 | Plus |
CG1503-PA | 307 | CG1503-PA | 88..299 | 10..213 | 324 | 35.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21188-PA | 212 | GI21188-PA | 2..211 | 5..214 | 972 | 81.9 | Plus |
Dmoj\GI18461-PA | 195 | GI18461-PA | 1..193 | 21..213 | 836 | 77.2 | Plus |
Dmoj\GI15294-PA | 349 | GI15294-PA | 138..346 | 5..212 | 713 | 59.3 | Plus |
Dmoj\GI14319-PA | 262 | GI14319-PA | 50..248 | 10..213 | 375 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10824-PA | 215 | GL10824-PA | 1..214 | 1..214 | 1005 | 84.1 | Plus |
Dper\GL16580-PA | 300 | GL16580-PA | 74..281 | 10..213 | 290 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21116-PA | 215 | GA21116-PA | 1..214 | 1..214 | 1005 | 84.1 | Plus |
Dpse\GA13447-PA | 302 | GA13447-PA | 76..283 | 10..213 | 289 | 32.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21362-PA | 215 | GM21362-PA | 1..215 | 1..215 | 1159 | 99.5 | Plus |
Dsec\GM22639-PA | 317 | GM22639-PA | 97..309 | 10..213 | 274 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10859-PA | 215 | GD10859-PA | 1..215 | 1..215 | 1159 | 99.5 | Plus |
Dsim\GD24436-PA | 316 | GD24436-PA | 97..308 | 10..213 | 341 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20790-PA | 212 | GJ20790-PA | 2..211 | 5..214 | 978 | 83.3 | Plus |
Dvir\GJ21548-PA | 212 | GJ21548-PA | 2..210 | 5..213 | 892 | 75.6 | Plus |
Dvir\GJ16998-PA | 377 | GJ16998-PA | 166..374 | 5..212 | 713 | 60.8 | Plus |
Dvir\GJ19377-PA | 264 | GJ19377-PA | 36..242 | 2..213 | 396 | 37.4 | Plus |
Translation from 305 to 952
> RE42624.hyp MGSNSKADPISLTFHDSCLRMSDVQLLHGPHWLNDQILSFYYEYLAHMKY KTNADLHFIAPEITQCMKYMGDQELKQLLDQSNTTGKPFIFFALNDNETT DAGGSHWSLLVFSRPEKTFYHFDSYGNNNTGNSLELMNKIKDLLGVRMAK FRPMRCLQQANGYDCGIHVICMTDHIADYLNRYEVIDGLPSLHIDTVKAK RTELLKLILSLGGKG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Den1-PA | 215 | CG8493-PA | 1..215 | 1..215 | 1156 | 100 | Plus |
Den1-PC | 249 | CG8493-PC | 35..249 | 1..215 | 1156 | 100 | Plus |
CG1503-PB | 307 | CG1503-PB | 88..299 | 10..213 | 324 | 35.8 | Plus |
CG1503-PA | 307 | CG1503-PA | 88..299 | 10..213 | 324 | 35.8 | Plus |