BDGP Sequence Production Resources |
Search the DGRC for RE42883
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 428 |
Well: | 83 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Sod3-RD |
Protein status: | RE42883.pep: gold |
Sequenced Size: | 1104 |
Gene | Date | Evidence |
---|---|---|
CG9027 | 2004-09-29 | Blastp of sequenced clone |
CG9027 | 2008-04-29 | Release 5.5 accounting |
CG9027 | 2008-08-15 | Release 5.9 accounting |
CG9027 | 2008-12-18 | 5.12 accounting |
1104 bp (1104 high quality bases) assembled on 2004-09-29
GenBank Submission: BT015997
> RE42883.complete AGTTCCGTCGCAGGTTTCCAACGGTACAGAGGTGCAATCGCTTAATTCTC GCAAAAAACAATCAGTACCCAATTATAAAATAGTTGCTAACAAGTTCAAA ATGATGCAATATCTTGTTGTTAGCCTGGCACTCTGTGCCACAATTTGCTC TGCTGCGCAGACGCGCAATATGCCCATTCAAGCCATTGCCTATCTGATTG GACCCGTGCAATCGGATAATACCCAGGTCAAGGGCAACGTGACCTTTACG CAGAACGACTGTGGCCAGAATGTCCATGTGCGCGTCCAGCTGGAGGGATT GAAGGAGGGCAAGCACGGCTTCCACATTCACGAGAAGGGAGATCTGACCA ATGGATGCATCAGCATGGGTGCTCACTATAACCCCGATAAGGTTGATCAC GGTGGCCCCGATCACGAGGTGCGTCATGTTGGCGATCTGGGCAACCTGGA GGCCAACTCCACGGGCATTATCGACGTTACATACACGGATCAGGTGATCA CCTTAACTGGCAAGCTGGGGATCATTGGCAGGGGAGTTGTTGTCCACGAA TTGGAGGATGATCTCGGTCTGGGCAACCACACGGATTCCAAGAAGACCGG CAATGCAGGCGGCCGCATTGCCTGTGGTGTTATTGGCATCAACTCGGATG TGGACGAGTGGCCATGTCGCGATGGTGGCGCCGGCGCCCTGCGCTACTCC TTCTCCATCCTGACCGTCATCGTGGCCCTCATCATGGCCCGCAGCCTTGA CTAATCCGAAACATGCACCCGGATCGGATCGAATGCACGCATGTGGCATG GGATTGTTGGCCATCGTAGTGATCTGCATACCTACTTACACACTAACCAC ACAACCATGAGTCGCACACCACTACCAACAGTAATTATAATACTCCAGCA TTATCCACCCAAATAGAGAAATCAAAGGAACTAACTAAGCTACTTGTAAA GTGTTTGAATTGATCGATAATAAAGTTTGTTATTTGTATTTCGGGTGCTT GCAATTTGTACGTGCTTAGATAGTAACAAAAGTTGCTGAAAATGAACGAC AGATAAGGGTTAGCTCTAATTTTATAAAAAAGATTAGACAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9027-RD | 1384 | CG9027-RD | 293..1384 | 1..1092 | 5460 | 100 | Plus |
CG9027.a | 1641 | CG9027.a | 841..1390 | 93..642 | 2750 | 100 | Plus |
CG9027-RC | 2635 | CG9027-RC | 1790..2339 | 93..642 | 2750 | 100 | Plus |
CG9027.a | 1641 | CG9027.a | 1..94 | 1..94 | 470 | 100 | Plus |
CG9027-RC | 2635 | CG9027-RC | 1..94 | 1..94 | 470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7267804..7268250 | 1089..643 | 2190 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 7269391..7269625 | 397..163 | 1160 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 7269112..7269342 | 620..390 | 1110 | 98.7 | Minus |
chr2R | 21145070 | chr2R | 7271457..7271550 | 94..1 | 470 | 100 | Minus |
chr2R | 21145070 | chr2R | 7269691..7269761 | 163..93 | 340 | 98.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11380344..11380793 | 1092..643 | 2250 | 100 | Minus |
2R | 25286936 | 2R | 11381949..11382183 | 397..163 | 1160 | 99.6 | Minus |
2R | 25286936 | 2R | 11381663..11381893 | 620..390 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 11384015..11384108 | 94..1 | 470 | 100 | Minus |
2R | 25286936 | 2R | 11382249..11382319 | 163..93 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11381543..11381992 | 1092..643 | 2250 | 100 | Minus |
2R | 25260384 | 2R | 11383148..11383382 | 397..163 | 1160 | 99.5 | Minus |
2R | 25260384 | 2R | 11382862..11383092 | 620..390 | 1155 | 100 | Minus |
2R | 25260384 | 2R | 11385214..11385307 | 94..1 | 470 | 100 | Minus |
2R | 25260384 | 2R | 11383448..11383518 | 163..93 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2346..2418 | 651..721 | 126 | 65.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7269691..7269759 | 95..163 | 98 | <- | Minus |
chr2R | 7271457..7271550 | 1..94 | 100 | Minus | |
chr2R | 7269397..7269624 | 164..391 | 100 | <- | Minus |
chr2R | 7267804..7268250 | 643..1089 | 99 | <- | Minus |
chr2R | 7269022..7269043 | 621..642 | 100 | <- | Minus |
chr2R | 7269112..7269340 | 392..620 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9027-RD | 1..654 | 101..754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9027-RD | 1..654 | 101..754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sod3-RD | 1..654 | 101..754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9027-RD | 1..654 | 101..754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sod3-RD | 1..654 | 101..754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9027-RD | 1..1089 | 1..1089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9027-RD | 1..1089 | 1..1089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sod3-RD | 7..1095 | 1..1089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9027-RD | 1..1089 | 1..1089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sod3-RD | 7..1095 | 1..1089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11381663..11381891 | 392..620 | 100 | <- | Minus |
2R | 11380347..11380793 | 643..1089 | 100 | <- | Minus |
2R | 11381573..11381594 | 621..642 | 100 | <- | Minus |
2R | 11381955..11382182 | 164..391 | 100 | <- | Minus |
2R | 11382249..11382317 | 95..163 | 100 | <- | Minus |
2R | 11384015..11384108 | 1..94 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11381663..11381891 | 392..620 | 100 | <- | Minus |
2R | 11380347..11380793 | 643..1089 | 100 | <- | Minus |
2R | 11381573..11381594 | 621..642 | 100 | <- | Minus |
2R | 11381955..11382182 | 164..391 | 100 | <- | Minus |
2R | 11382249..11382317 | 95..163 | 100 | <- | Minus |
2R | 11384015..11384108 | 1..94 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11381663..11381891 | 392..620 | 100 | <- | Minus |
2R | 11380347..11380793 | 643..1089 | 100 | <- | Minus |
2R | 11381573..11381594 | 621..642 | 100 | <- | Minus |
2R | 11381955..11382182 | 164..391 | 100 | <- | Minus |
2R | 11382249..11382317 | 95..163 | 100 | <- | Minus |
2R | 11384015..11384108 | 1..94 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7271520..7271613 | 1..94 | 100 | Minus | |
arm_2R | 7269168..7269396 | 392..620 | 100 | <- | Minus |
arm_2R | 7267852..7268298 | 643..1089 | 100 | <- | Minus |
arm_2R | 7269078..7269099 | 621..642 | 100 | <- | Minus |
arm_2R | 7269460..7269687 | 164..391 | 100 | <- | Minus |
arm_2R | 7269754..7269822 | 95..163 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11383154..11383381 | 164..391 | 100 | <- | Minus |
2R | 11383448..11383516 | 95..163 | 100 | <- | Minus |
2R | 11381546..11381992 | 643..1089 | 100 | <- | Minus |
2R | 11382772..11382793 | 621..642 | 100 | <- | Minus |
2R | 11382862..11383090 | 392..620 | 100 | <- | Minus |
2R | 11385214..11385307 | 1..94 | 100 | Minus |
Translation from 0 to 753
> RE42883.hyp VPSQVSNGTEVQSLNSRKKQSVPNYKIVANKFKMMQYLVVSLALCATICS AAQTRNMPIQAIAYLIGPVQSDNTQVKGNVTFTQNDCGQNVHVRVQLEGL KEGKHGFHIHEKGDLTNGCISMGAHYNPDKVDHGGPDHEVRHVGDLGNLE ANSTGIIDVTYTDQVITLTGKLGIIGRGVVVHELEDDLGLGNHTDSKKTG NAGGRIACGVIGINSDVDEWPCRDGGAGALRYSFSILTVIVALIMARSLD *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sod3-PD | 217 | CG9027-PD | 1..217 | 34..250 | 1145 | 100 | Plus |
Sod3-PE | 243 | CG9027-PE | 1..181 | 34..214 | 961 | 100 | Plus |
Sod3-PA | 181 | CG9027-PA | 1..180 | 34..213 | 955 | 100 | Plus |
Sod3-PB | 181 | CG9027-PB | 1..180 | 34..213 | 955 | 100 | Plus |
Sod-PA | 153 | CG11793-PA | 10..150 | 73..213 | 374 | 55.3 | Plus |
Translation from 1 to 753
> RE42883.pep VPSQVSNGTEVQSLNSRKKQSVPNYKIVANKFKMMQYLVVSLALCATICS AAQTRNMPIQAIAYLIGPVQSDNTQVKGNVTFTQNDCGQNVHVRVQLEGL KEGKHGFHIHEKGDLTNGCISMGAHYNPDKVDHGGPDHEVRHVGDLGNLE ANSTGIIDVTYTDQVITLTGKLGIIGRGVVVHELEDDLGLGNHTDSKKTG NAGGRIACGVIGINSDVDEWPCRDGGAGALRYSFSILTVIVALIMARSLD *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12396-PA | 210 | GF12396-PA | 1..210 | 35..250 | 913 | 80.6 | Plus |
Dana\GF24570-PA | 153 | GF24570-PA | 1..150 | 57..213 | 350 | 51 | Plus |
Dana\GF18703-PA | 124 | GF18703-PA | 9..121 | 101..213 | 287 | 54.9 | Plus |
Dana\GF11145-PA | 263 | GF11145-PA | 86..233 | 72..219 | 269 | 42.4 | Plus |
Dana\GF16781-PA | 267 | GF16781-PA | 94..247 | 60..215 | 155 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22650-PA | 181 | GG22650-PA | 1..180 | 34..213 | 907 | 95 | Plus |
Dere\Sod-PA | 153 | GG13936-PA | 10..150 | 73..213 | 350 | 54.6 | Plus |
Dere\GG25230-PA | 264 | GG25230-PA | 86..234 | 72..219 | 248 | 42.1 | Plus |
Dere\GG22651-PA | 96 | GG22651-PA | 60..96 | 214..250 | 180 | 83.8 | Plus |
Dere\GG11434-PA | 270 | GG11434-PA | 94..247 | 60..215 | 163 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20507-PA | 181 | GH20507-PA | 1..180 | 34..213 | 783 | 78.9 | Plus |
Dgri\GH11755-PA | 181 | GH11755-PA | 1..180 | 34..213 | 760 | 77.2 | Plus |
Dgri\GH14640-PA | 153 | GH14640-PA | 10..150 | 73..213 | 355 | 54.6 | Plus |
Dgri\GH19972-PA | 285 | GH19972-PA | 108..247 | 72..211 | 273 | 46.9 | Plus |
Dgri\GH22309-PA | 256 | GH22309-PA | 90..248 | 60..221 | 182 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sod3-PD | 217 | CG9027-PD | 1..217 | 34..250 | 1145 | 100 | Plus |
Sod3-PE | 243 | CG9027-PE | 1..181 | 34..214 | 961 | 100 | Plus |
Sod3-PF | 181 | CG9027-PF | 1..180 | 34..213 | 955 | 100 | Plus |
Sod3-PA | 181 | CG9027-PA | 1..180 | 34..213 | 955 | 100 | Plus |
Sod3-PB | 181 | CG9027-PB | 1..180 | 34..213 | 955 | 100 | Plus |
Sod1-PA | 153 | CG11793-PA | 10..150 | 73..213 | 374 | 55.3 | Plus |
Sod1-PD | 167 | CG11793-PD | 30..164 | 79..213 | 361 | 55.6 | Plus |
Ccs-PC | 258 | CG17753-PC | 80..228 | 72..219 | 277 | 42.1 | Plus |
Ccs-PB | 264 | CG17753-PB | 86..234 | 72..219 | 277 | 42.1 | Plus |
CG5948-PB | 269 | CG5948-PB | 93..246 | 60..215 | 172 | 29.2 | Plus |
CG5948-PA | 270 | CG5948-PA | 94..247 | 60..215 | 172 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21051-PA | 181 | GI21051-PA | 1..180 | 34..213 | 784 | 78.9 | Plus |
Dmoj\GI11624-PA | 153 | GI11624-PA | 10..150 | 73..213 | 349 | 54.6 | Plus |
Dmoj\GI20259-PA | 236 | GI20259-PA | 86..219 | 72..205 | 250 | 44.5 | Plus |
Dmoj\GI22979-PA | 271 | GI22979-PA | 105..255 | 70..221 | 173 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10397-PA | 277 | GL10397-PA | 1..181 | 34..214 | 830 | 82.9 | Plus |
Dper\Sod-PA | 152 | GL22843-PA | 9..149 | 73..213 | 351 | 53.9 | Plus |
Dper\GL20081-PA | 263 | GL20081-PA | 86..233 | 72..219 | 260 | 40.4 | Plus |
Dper\GL21798-PA | 267 | GL21798-PA | 95..246 | 60..213 | 165 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30465-PA | 258 | GA30465-PA | 1..180 | 34..213 | 830 | 82.8 | Plus |
Dpse\GA30465-PB | 181 | GA30465-PB | 1..180 | 34..213 | 826 | 82.8 | Plus |
Dpse\Sod-PA | 152 | GA11202-PA | 9..149 | 73..213 | 351 | 53.9 | Plus |
Dpse\GA14646-PA | 263 | GA14646-PA | 86..233 | 72..219 | 260 | 40.4 | Plus |
Dpse\GA19252-PA | 266 | GA19252-PA | 94..245 | 60..213 | 165 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20432-PA | 181 | GM20432-PA | 1..180 | 34..213 | 934 | 97.2 | Plus |
Dsec\Sod-PA | 153 | GM24771-PA | 10..150 | 73..213 | 354 | 55.3 | Plus |
Dsec\GM20549-PA | 264 | GM20549-PA | 86..234 | 72..219 | 248 | 42.1 | Plus |
Dsec\GM20433-PA | 96 | GM20433-PA | 60..96 | 214..250 | 192 | 94.6 | Plus |
Dsec\GM10274-PA | 270 | GM10274-PA | 94..247 | 60..215 | 162 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25903-PA | 181 | GD25903-PA | 1..180 | 34..213 | 939 | 98.3 | Plus |
Dsim\Sod-PA | 153 | GD12822-PA | 10..150 | 73..213 | 354 | 55.3 | Plus |
Dsim\GD26004-PA | 264 | GD26004-PA | 86..234 | 72..219 | 250 | 42.8 | Plus |
Dsim\GD25904-PA | 96 | GD25904-PA | 60..96 | 214..250 | 192 | 94.6 | Plus |
Dsim\GD21244-PA | 270 | GD21244-PA | 94..247 | 60..215 | 165 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21975-PA | 181 | GJ21975-PA | 1..180 | 34..213 | 761 | 76.7 | Plus |
Dvir\Sod-PA | 153 | GJ11304-PA | 10..150 | 73..213 | 354 | 55.3 | Plus |
Dvir\GJ20212-PA | 263 | GJ20212-PA | 86..225 | 72..211 | 265 | 44.8 | Plus |
Dvir\GJ24673-PA | 268 | GJ24673-PA | 94..246 | 60..215 | 172 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21886-PA | 181 | GK21886-PA | 1..180 | 34..213 | 792 | 80.6 | Plus |
Dwil\GK13564-PA | 157 | GK13564-PA | 1..154 | 34..190 | 619 | 74.5 | Plus |
Dwil\Sod-PA | 153 | GK20556-PA | 10..150 | 73..213 | 376 | 56.7 | Plus |
Dwil\GK23033-PA | 252 | GK23033-PA | 87..214 | 72..211 | 174 | 35.5 | Plus |
Dwil\GK12866-PA | 257 | GK12866-PA | 98..235 | 74..211 | 156 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13524-PA | 181 | GE13524-PA | 1..180 | 34..213 | 917 | 95.6 | Plus |
Dyak\Sod-PA | 153 | GE20235-PA | 10..150 | 73..213 | 345 | 53.9 | Plus |
Dyak\GE21764-PA | 264 | GE21764-PA | 86..234 | 72..219 | 258 | 42.8 | Plus |
Dyak\GE13525-PA | 100 | GE13525-PA | 64..100 | 214..250 | 195 | 97.3 | Plus |
Dyak\GE23628-PA | 270 | GE23628-PA | 94..247 | 60..215 | 159 | 29.8 | Plus |